BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,937	0	C	A	34.3%	1480.1 / 155.0	1018	intergenic (+321/+137)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base C (284/363); new base A (268/70); total (563/455)
Fisher's exact test for biased strand distribution p-value = 2.05e-27
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1031 total aligned reads displayed.

GCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203811‑204064

accATTTGTAAAAAACCATATTTTCATATTATTTTATTAAACTTATAAAAATAAAAACTCTTTCTAATTGTTTTTTTTT‑TTCTTT‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCa                                                                                                                                  <  1:1101355/127‑1 (MQ=255)

     ttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAAATAATGTAATATTTGGTTAAACCa                                                                                                                              >  2:231595/1‑128 (MQ=255)

        tAAAAAATCATATTTTATATGCTTTTTTTTATACTTATTAAAATTAAAAATCTTTAAAATTTTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                                                                           <  2:4577554/128‑1 (MQ=255)

         aaaaaataatatgttttatgtttTTTATTATTCTTATAAAAATTAAAAATTTTTAAAATTTTATTTTTTA‑TTGTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                                          <  2:1272094/119‑1 (MQ=255)

         aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTTT‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAATATTAATATTTTGATAAAACaaa                                                                                                                            >  2:2620939/1‑128 (MQ=255)

           aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑TGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑ATAAAAAAAAATTAAGATTTGGATAAACAaaaaaaa                                                                                                                        >  1:1227342/1‑125 (MQ=255)

               gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTTT‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAAGTAATATTTGTATAAAACAAAAatatt                                                                                                                      >  2:755853/1‑127 (MQ=255)

               gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTATATTTTTGATAAACCAATAatatat                                                                                                                     >  2:4084013/1‑128 (MQ=255)

               gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTATAATTTGGATAAAACAAACATATAT‑c                                                                                                                   >  2:1948016/1‑128 (MQ=255)

                ccTATTTTCTAGGATTTTTATTATTATTTTCAAAATTAAAACGCTTTCTAATTGTATTTTTTT‑GTCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑Ca                                                                                                                  <  2:3014270/128‑1 (MQ=255)

                 cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAAATAAATTAAATTTTTGATAAAACAAAACTTTAT‑Taa                                                                                                                 >  2:2205396/1‑128 (MQ=255)

                  aaTGTTTTTGGTTTTTTTTTATAATTTTAAAAATTAAAATGCTTTTAAAGTTTATTTTTTT‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑Caa‑a                                                                                                               <  1:3031068/127‑1 (MQ=255)

                     gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAATATTTGGAAACAACAAAAAGATAT‑Caa‑aaa                                                                                                             >  1:534820/1‑128 (MQ=255)

                     aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTT‑‑T‑A‑AAAATAAAATTAAGATTTGTTTCAACCAAAACTAAAT‑aaa‑aaaaaat                                                                                                         >  1:1008672/5‑126 (MQ=255)

                       tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GTCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAATTAAGTTTTTTATAAACAAAAACATTAT‑aaa‑atata                                                                                                           >  2:2012202/1‑124 (MQ=255)

                        atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAAGTAATATTTGTATCAACCAAAACT‑TAT‑Taa‑aaaaaat                                                                                                         >  2:3505662/2‑126 (MQ=255)

                        atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTAATATTTTGTAAAACAAAAAAAAAAT‑CAA‑AAAAATTa                                                                                                        >  1:3934105/2‑128 (MQ=255)

                          aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTAAAATTTGGATCAACCAAAAATTTAT‑CAA‑AAAAATTaa                                                                                                       >  2:4309730/1‑128 (MQ=255)

                           tgttttttATTATAATTTTTAAAATTTAAATGTTTTAAATTTGTTTTTTTTATGTTTTT‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTaaa                                                                                                      <  1:3535982/125‑1 (MQ=255)

                            gCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAAGAAATAATTGTAAAACAGAAAAAAAAAT‑Caa‑aaaaaaaaaaaa                                                                                                    >  1:669423/1‑128 (MQ=255)

                               ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTATA‑GGCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAAAATTTTGATAAAACAAAACAATAA‑AAA‑AAAAATTaaaaaa                                                                                                   >  1:983270/1‑128 (MQ=255)

                                tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAAATTAAATTTGTATAAAAAATAAATTTA‑‑AAA‑AAAAATAataaaaaa                                                                                                 >  2:1451920/1‑128 (MQ=255)

                                tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑TATTTTTT‑A‑AAAATAAAAGTAAGATTTTGATCAACAAAAACTATAT‑AAA‑AAAAATAaaaaaaaa                                                                                                 >  2:3373931/1‑128 (MQ=255)

                                 ttatttTAATTATAAAAATTACAAAGTTTTAAAATTGTTTTTTTTA‑TGGTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAAt                                                                                                <  1:3809977/128‑1 (MQ=255)

                                   attatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAAAATTTTGATAAAAAAAAAATATAA‑AAA‑AAAAATTaaaaaaaaaatt                                                                                             >  2:1746085/1‑124 (MQ=255)

                                    ttattattATAAAAATTAAAACGCTTTAAAATTGTATTTTTTT‑TGTTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAAtagt                                                                                             <  2:3844729/122‑1 (MQ=255)

                                    ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTTATATTTGGATAAACCAAAACTATat‑aaa‑aaaaaataaaaaaaaaaatt                                                                                            >  2:3443788/1‑123 (MQ=255)

                                    ttaaaattATGAAAATTACAAAGTATTCAAATTGTATTTTTTT‑CGATTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAAtag                                                                                              <  1:582099/122‑1 (MQ=255)

                                    ttaaACTTATCAACATTACAACGCTTTCAAAGTGTATTTATTA‑GGATTG‑‑‑‑‑TTTTT‑TTTTTTAT‑TTTTTT‑A‑AAAAAAAAAAAAAAATTTTAATAAAAAAAAAAAATAT‑AAa‑aaaaattaaaaaaattatt                                                                                             >  2:2933870/1‑126 (MQ=255)

                                      ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTTT‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTTAATTTTGTTTAAACCAAAAAATTTt‑aaa‑aaaaattaaaaaaaattat                                                                                             >  2:3793718/1‑125 (MQ=255)

                                        aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTAAGATTTGGAAAAACCAAAAATATAA‑AAA‑AAAAATTAAAAAAAAaatttta                                                                                          >  2:4477949/1‑128 (MQ=255)

                                         cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTT‑T‑A‑AAAAAAAAAATAAATATTTGTTAAAACAAAAATAAAT‑AAA‑AAAAATTAAAAAAAAtaattttatat                                                                                      >  2:4392298/1‑123 (MQ=255)

                                         attATCAAAATTAAAACGCTTTTAAATTTTTTTTTTTT‑GGGTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAAtagtttagtt                                                                                       <  1:4312426/127‑1 (MQ=255)

                                                 cATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTT‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAATATTTGGATAAACAAAAAAAAAAA‑AAA‑AAAAAATAAAAAAAAtattttagttttattt                                                                                 >  1:176368/1‑122 (MQ=255)

                                                 cATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTAT‑T‑AAAAAAAAAAAAATATTTGGCT‑ACACAAAAAAAAAA‑AAA‑AAAAATTAAAAAAAAtaatttttttgtatttat                                                                               >  1:2396827/1‑116 (MQ=255)

                                                  aTTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAAATAATATTTGTAAAAACCAAAAATATAA‑AAA‑AAAAATTAAAAAAAAAattttattttattttaa                                                                               >  1:1166014/1‑126 (MQ=255)

                                                     aCAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTTTTTTTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTAATATTTTGATAAACCAAAAAATTAA‑AAA‑AAAAATTAAAAAAAAAattttattttatttta                                                                                >  2:135830/1‑127 (MQ=255)

                                                      cAACGCTTTCAAAGTGTATTTTTTA‑GGCTTGTTT‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAATATTTGGATCAAACAAAAATATAA‑AAA‑AAAAATTAAAAAAAATATTTTATTTTATTTTaaaa                                                                             >  2:4627891/1‑128 (MQ=255)

                                                       aaCGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAATATTTGTATAAACCAAAACTATAT‑AAA‑AAAAATTAAAAAAAATATTTTATTTTATTTTAAAAtat                                                                          >  2:1626962/1‑126 (MQ=255)

                                                        aCGCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAAAAAAATTAAGATTTGTATCAACAAAAAATATAA‑AAA‑AAAAATTAAAAAAAAAATTTTATTTGATTTTCAAAtatt                                                                         >  2:4193675/1‑125 (MQ=255)

                                                         tgCTTTAAAATTTTTTTTTTTT‑TGCTTT‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGATTAGTTGAGATTCAAAGCTGCa                                                                       <  1:247458/127‑1 (MQ=255)

                                                          gCTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAAAAAAATTAATATTTGTAAAAAACAAAAAAATAA‑AAA‑AAAAATTAAAAAAAAATTTTTAGTTGATTTTAAAATATgtt                                                                       >  1:332176/1‑126 (MQ=255)

                                                           cTTTCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAAAAAAAGTAAGATTTTGATCAACCAAAACTATAA‑CAA‑AAAAATAAAAAAAAATATTTTATTTGTGTTTCAAATAGGCat                                                                      >  1:3885654/1‑128 (MQ=255)

                                                           cTTTCAAAGTGTATTTTTTA‑GGCTAG‑‑‑‑‑TTTTTATTTTTT‑T‑TTATATGA‑AAAATAAAAATAAATTTTTTAAAAACAAAACCGAAAT‑CAA‑AAAAAATAAAAAAAAAATTTATGTTGAATTTAAAATCTGCa                                                                       >  1:3692678/1‑128 (MQ=255)

                                                            ttttaattgtttttttttG‑GTTTTT‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑ATAATAAAAGTAAGATTTGGATAAACCAAAACTATAT‑CAA‑AAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCatat                                                                    <  1:1909880/116‑1 (MQ=255)

                                                             ttCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑T‑AAAAAAAAAGAAAGATTTTGATCAACCAAAAATAATT‑CTA‑AAAAATTAAAAAAAAAAGTTTATTTGTATTAAAAATCtttatta                                                                    >  1:2942343/1‑122 (MQ=255)

                                                              tCAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAAAAAAATTAATATTTGGTAAAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATATTTTATTTGAGTTTCAAATCTGCatata                                                                   >  2:1521868/1‑128 (MQ=255)

                                                               cAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAAGTAAGTTTTGGAAAAACAAAACATATAG‑AAA‑AAAAATAAAAAAAAAAATTTTATTTTAGTTACaagacggaaaataa                                                                  >  1:4246022/1‑116 (MQ=255)

                                                               cAAAGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAATAAGATTTGGATAAACAAAAACAAAAT‑AAA‑AAAAATTAAAAAAATTATTTTAATTATGTTTAAAAAAGGCatataa                                                                  >  1:1351957/1‑127 (MQ=255)

                                                                aaaGTGTATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATATTTAAGTTGAGATTCAAATcatcaaattaa                                                                 >  2:2851264/1‑118 (MQ=255)

                                                                aaaGTGTATTTTTTA‑GGCTTG‑‑‑‑‑‑‑TTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTATGATTTGGAACAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATATTTTTGTTGAGTTTAAAATCTGCATTTATTGTa                                                              >  1:2303215/1‑128 (MQ=255)

                                                                    tgtATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGAAATATTTGAAACAACCAAAAATATAT‑AAA‑AAAAATTAAAAAAAAAATTTTTTTTTATTTTAAAATCTGAATATATTGTAc                                                             >  2:3266090/1‑128 (MQ=255)

                                                                     gtATTTTTTA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAAGTAATATTTGTATAAAACAAAAAAATAA‑AAA‑AAAAATT‑AAAAAAATATTTTAATTTAATTACAAAAAAGAATATAAATTACaa                                                           >  2:2521297/1‑128 (MQ=255)

                                                                      tATTTTTTA‑GGCTTGTTT‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATTAAATTAAGATTTTGATAAAACAAAAC‑ATATAAAA‑AAAAATAAAAAAAAAAATTTTAATTTAGTTTAAAAAGGGCATATTTTGTaa                                                             >  1:1505664/1‑127 (MQ=255)

                                                                        ttttttA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAAGATTTGGTTAAACCAAAACTATTT‑AAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATTCATATTTATTTCAAAg                                                         >  2:1112101/1‑128 (MQ=255)

                                                                        ttttttA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAATTAAGATTTGGATAAACCAAAACTTTTT‑CAA‑AAAAATTAAAAAAAATAGTTTATTTGAGTTTAAAATCTGCATATATATTAaaaat                                                         >  2:3141784/1‑127 (MQ=255)

                                                                        ttttttA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTT‑T‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑AAA‑AAAAATTAAAAAAATTAGTTTAGTTTAGTTTCAAATATGCATAAATATTACAAAGGa                                                       >  2:564741/1‑128 (MQ=255)

                                                                          ttttA‑GGCTTGT‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTTT‑A‑AAAATAAAAATAAAATTTGGATAAACCAAATATATTT‑AAA‑AAAAATTAAAAAAAAATTTTTTATTAAGTTTAAAAACTGGAAATTTATTACAAAgat                                                       >  1:1427563/1‑126 (MQ=255)

                                                                          ttttA‑GGCTTG‑‑‑‑‑‑TTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAAATATAT‑AAA‑AAAAATTAAAAAAAATAGTTTATTTTAGTTTCAAATCTTCATATATAGTAAAAATGAAt                                                     >  2:84214/1‑128 (MQ=255)

                                                                                  tttttttttttttt‑tttttt‑t‑ttttGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                                                    <  1:2214056/119‑1 (MQ=255)

                                                                                   tgttttttttttt‑tttttt‑t‑ttttGT‑A‑AAAATTATTGTATGATTTTGATCAACAAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  1:923983/120‑1 (MQ=255)

                                                                                     ttttttttttt‑tttttt‑t‑ttttGT‑A‑TAAATAATAGTAAGATTTGGATCAACCAAAAATATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  1:2598212/122‑1 (MQ=255)

                                                                                       ttgtttttt‑tttttt‑t‑tttttt‑A‑AAAATAAAATTAAGATTTGGATAAACCAAAAATATAT‑AAA‑AAAAATTAAAAAAAATATTTTATTTGATTTTCAAATATGCATATATAGTACAAATGAATTTATGa                                               >  2:3985029/5‑128 (MQ=255)

                                                                                          tttttt‑tttttt‑t‑tttttt‑A‑AAAATAAAAGTAAGTTTTGGATAAACCAAAAATTTTT‑AAA‑AAAAATTAAAAAAAATATTTTTGTTTATTTTAAAATCAGAATATAATTTAAAAAGGAATTTATGATat                                            >  2:268818/2‑127 (MQ=255)

                                                                                          tttttt‑tttttt‑t‑ttttGT‑A‑AAAATATAAGTAAGATTTGGATCAACAAAAACTATAT‑AAA‑AAAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                            <  1:1595892/127‑1 (MQ=255)

                                                                                          tttttt‑tttttt‑t‑ttttGT‑A‑AAAAAAAAATTAATTTTTGGTTAAAAGAAAAATTTAT‑AAA‑AAAAAATTAAAAAAATATTTTTGTTTTTTTAAAAAAAAGAATATATATAAAAAATGAATTTataataa                                            >  2:895149/2‑127 (MQ=255)

                                                                                            tttt‑tttttt‑t‑ttttGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:3183986/128‑1 (MQ=255)

                                                                                            tttt‑tttttt‑t‑ttttGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  2:3601968/128‑1 (MQ=255)

                                                                                             ttt‑tttttt‑t‑ttttGT‑A‑AAAATATAAGTAAGATTTGGATAAACCATAAATATAT‑CAA‑AAAAATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:4392298/128‑1 (MQ=255)

                                                                                             ttt‑tttttt‑t‑ttttGT‑A‑AAAATAAAAGTAAGATTTGGATCAACGAAAACTATAT‑CAA‑TAAAATTAATAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:4207808/128‑1 (MQ=255)

                                                                                             ttt‑tttttt‑t‑ttttGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:3857039/128‑1 (MQ=255)

                                                                                               t‑tttttt‑t‑tttttt‑A‑AAAAAAAAAGTAAGATTTGGATCAACCAAAAAAAAAA‑AAA‑AAAAATTAAAAAAAATAGTTTATTTGTATTTAAAATCTGCAAATATATTACAAAGGAATTTATTATTaaaaaa                                       >  1:4468032/1‑128 (MQ=255)

                                                                                               t‑tttttt‑t‑ttttGT‑A‑AAAATAAAAGTAAGATTTTGATAAATAAAAATTATAT‑AAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:20110/128‑1 (MQ=255)

                                                                                               t‑tttttt‑t‑ttttGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:2085129/128‑1 (MQ=255)

                                                                                                  ttttt‑t‑ttttGT‑A‑ATATTTTAAGTAATTTTTGTATTAAATAAAACTATAT‑CAT‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                     <  1:831844/128‑1 (MQ=255)

                                                                                                    ttt‑t‑ttttGT‑A‑AAAATAAAATTAAGATTTGGGTCAACCAAAAATATTT‑AAA‑AAAAATTAAAAAAAATATTTTTATTTATTTTAAAATATGAATATATATTAAAAAGGAATTTATTATATAAAAAAAtt                                   >  2:394185/1‑127 (MQ=255)

                                                                                                            ttGT‑A‑TAAATAAAAGTATTTTTTTGATCAAACAAAACTATAT‑CAA‑AAAAATTAAAATAATTAGTTTTGTTTAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:4068913/128‑2 (MQ=255)

                                                                                                                   aaaaTAAAAGTAAGATTTTGATCAACCAATACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  1:3590095/128‑1 (MQ=255)

                                                                                                                    aaaTAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAAAAAGGAATTTATGATATAAAAAAATGGATTATTTGATa                       >  1:2703678/1‑128 (MQ=255)

                                                                                                                       ttataGTAAGATTTTGATCAAACAAAAATATAT‑CAA‑TATAATTAAAAAAATTTGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:2113018/124‑1 (MQ=255)

                                                                                                                       tAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:3972501/128‑1 (MQ=255)

                                                                                                                        aaaaGTAAGATTTGTATCAACAAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:4247618/128‑1 (MQ=255)

                                                                                                                        aaaaGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   >  2:3711777/1‑128 (MQ=255)

                                                                                                                          aaGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  2:4027961/128‑1 (MQ=255)

                                                                                                                          aaGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 >  1:4025213/1‑128 (MQ=255)

                                                                                                                          aaGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTACAAATCTGCATATATAGTACAAAGTAATTAATGATAGAAAAAAATGGATTAGATGATTATGCAt                 >  1:485270/1‑128 (MQ=255)

                                                                                                                              aaGATTTGGATCAAACAAAACTATAT‑CAATAAAAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt              <  2:3882158/128‑1 (MQ=255)

                                                                                                                                gATTTGGATCTACCTAAAATATAT‑AAT‑AAATATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           <  1:4558785/128‑1 (MQ=255)

                                                                                                                                gATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  2:363228/1‑128 (MQ=255)

                                                                                                                                gATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           <  2:3572286/128‑1 (MQ=255)

                                                                                                                                gATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  2:1826472/1‑128 (MQ=255)

                                                                                                                                 aTTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  2:2777938/1‑128 (MQ=255)

                                                                                                                                 aTTTGGATAAACCAATACTATAT‑CAT‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  1:1692359/128‑1 (MQ=255)

                                                                                                                                  tttGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         >  2:2397172/1‑128 (MQ=255)

                                                                                                                                  tttGGATCAAACAAAACTATAT‑CAA‑TAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  2:1183562/128‑1 (MQ=255)

                                                                                                                                    tGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       >  1:365500/1‑128 (MQ=255)

                                                                                                                                    tGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       >  1:4135507/1‑128 (MQ=255)

                                                                                                                                         caaacaaaACTATAT‑CAT‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt  <  2:515574/128‑1 (MQ=255)

                                                                                                                                         cAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     <  2:625750/125‑1 (MQ=255)

                                                                                                                                         cAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTAGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAATATGGATTAGTAGAGAATCCATTTTTTAATTTTGgtt  >  1:3438003/1‑128 (MQ=255)

GCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGCTTG‑‑‑‑‑TTTTT‑TTTTTT‑T‑TTTTGT‑A‑AAAATAAAAGTAAGATTTGGATCAACCAAAACTATAT‑CAA‑AAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203811‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`