Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4670A.48.3% inf / inf 739intergenic (+245/‑430)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (88/291);  new base . (250/104);  total (339/400)
Fisher's exact test for biased strand distribution p-value = 4.32e-39
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.94e-34

Only 100 of 1029 total aligned reads displayed.

ATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAA‑‑‑ACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202340‑202597
                                                                                                                               |                                                                                                                                     
 ttAAAGTAAAAGTAGTTAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGAAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                                      <  1:5090090/128‑1 (MQ=255)
 ttAAAGTAAAAGTAGTGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                                      <  2:5979364/128‑1 (MQ=255)
 ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                                      <  2:6566098/128‑1 (MQ=255)
 ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                                      >  2:642273/1‑128 (MQ=255)
 ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                                      >  2:5775259/1‑128 (MQ=255)
 ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaa                                                                                                                                      <  1:3687418/128‑1 (MQ=255)
  tAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATaaa                                                                                                                                     >  2:5837497/1‑128 (MQ=255)
   aaagtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATaaaa                                                                                                                                    >  2:6296381/1‑128 (MQ=255)
    aagtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaa                                                                                                                                   <  1:938385/128‑1 (MQ=255)
       taaaagtaGTTAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaa                                                                                                                                <  2:2808036/128‑1 (MQ=255)
       taaaagaaTTGAAGTTATTTTAAATACTAGATTTAATTTTATTTATAATTCAATAAACTTAATAATTTTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaat                                                                                                                                <  2:4991789/128‑2 (MQ=255)
        aaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTTATCTATTTTTATATATTTTTATCTTCACAAATaaaaaaaaa                                                                                                                               >  1:6569214/1‑128 (MQ=255)
        aaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaa                                                                                                                               <  1:2042589/128‑1 (MQ=255)
        aaaactaGTGAAGTTAGTGTAAATAATAGAGATAACTTAAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaa                                                                                                                               <  1:1301772/128‑1 (MQ=255)
         aaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaa‑‑‑a                                                                                                                           >  2:4384757/1‑128 (MQ=255)
            ttactGAACTTATTGTAAATAATAGAGTTAATGATAATAAAAATACCATAAACTTAATAAATCTTATAATGAACAACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaacaat                                                                                                                           <  1:2545711/124‑5 (MQ=255)
            gtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaacaat                                                                                                                           <  1:2402245/128‑5 (MQ=255)
            gtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaacaat                                                                                                                           <  1:1760592/128‑5 (MQ=255)
            gtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaaacaat                                                                                                                           <  1:2153056/128‑5 (MQ=255)
            gatgtGAAGTTTTTTTAAAAAAATTAGTTAAGGTAAATTAAAATACCTTAAAATAAATAATTCTTATAATGTTTTTCCTCGTGATCTATTTTTTTATTTGTTTATCTACAAAAATaaaaaaaaacaat                                                                                                                           <  2:5513655/125‑5 (MQ=255)
             tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATc                                                                                                                      <  2:2323257/128‑1 (MQ=255)
             tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATc                                                                                                                      <  2:3195735/128‑1 (MQ=255)
             tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATc                                                                                                                      <  2:4070544/128‑1 (MQ=255)
             tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATc                                                                                                                      <  1:5527888/128‑1 (MQ=255)
             tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATc                                                                                                                      <  2:5470164/128‑1 (MQ=255)
              agtGAATTTAGTGAAAATATAAGAGTTAAGTTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATcc                                                                                                                     <  2:1954704/128‑1 (MQ=255)
              agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTATATTTTTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATca                                                                                                                     >  1:6243328/1‑127 (MQ=255)
              agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAA‑‑‑ACAATca                                                                                                                     >  1:547933/1‑127 (MQ=255)
               gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATcaa                                                                                                                    >  1:8029/1‑126 (MQ=255)
               gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATTTATATAATAATAATCTATTATTTTATATATTTATATAaaaaaaaaaaaaaaaa‑‑‑aaaaaaa                                                                                                                     >  2:261395/1‑125 (MQ=255)
                tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATTCCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATcccc                                                                                                                   <  2:4193078/128‑1 (MQ=255)
                     ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATACCCttaaa                                                                                                              >  2:6157772/1‑125 (MQ=255)
                      tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATcaccataaaa                                                                                                             >  2:3361364/1‑122 (MQ=255)
                       aGTGTAAATAATAGAGTTAAGTTTAATTAAAATAACATAAAATTAATAATTCTTATAATTTATATAATATTAATCTATTTTAATATTTAATTATATTAAAAAATAaaaaaaaa‑‑‑aaaaaaaattaaaaa                                                                                                             >  2:4676473/1‑117 (MQ=255)
                       aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATa                                                                                                                                       <  2:3754406/105‑1 (MQ=255)
                       aGTGTAAATAATAGAGTTAAGGTTAATAAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCACCtaaaaaa                                                                                                            >  2:2186575/1‑122 (MQ=255)
                        gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATaaaaaaaacaatccc                                                                                                                         >  1:3104261/1‑111 (MQ=255)
                        gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCACttaaaaat                                                                                                           >  1:4081881/1‑122 (MQ=255)
                              ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑ttaaaaattaaaaa                                                                                                   >  2:761722/1‑128 (MQ=255)
                                  taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAA‑‑‑ACAAT‑‑CAAATTAAAAATTaaaaaaaaa                                                                                               >  2:3062564/1‑128 (MQ=255)
                                  taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTATATCCTCGTGATCTAATATTTTATTTGTTTATCTTCACAAA‑AAAAAAAAA‑‑‑ACAATCCCC‑‑‑TAAAAAATtaaaaaaaaa                                                                                              >  2:6227415/1‑128 (MQ=255)
                                     attttatgTTAAATAAAATAACATAAACTTAAAAATTATTAAAAATTATTAACACGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAAAACCC‑‑TTAAAAAATaaaaaaaaaaaa                                                                                            <  1:3450324/121‑1 (MQ=255)
                                      gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCCt                                                                                                                  >  2:5274153/1‑107 (MQ=255)
                                       ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAA‑‑‑A‑AAACCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaa                                                                                         >  2:3520282/1‑128 (MQ=255)
                                       ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAAAAAC‑‑ATTAAAAAATaaaaaaaaaaaaaa                                                                                          >  2:4506206/1‑128 (MQ=255)
                                       ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTAAAAAATTAAATCATCGTGATCTATTTTTAAATATTATTATCTTCAAAAATAAAAAAAAA‑‑‑A‑AATAAC‑‑AATAAAAAATaaaaaaaaaaaaaa                                                                                          >  2:1198286/1‑128 (MQ=255)
                                        tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                         >  2:5398661/1‑128 (MQ=255)
                                        tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAAACCCC‑‑TTAAAAAATaaaaaaaaaaaaaaa                                                                                         >  2:3649596/1‑128 (MQ=255)
                                         aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAA‑‑‑A‑AATCCAC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaa                                                                                       >  2:3015332/1‑128 (MQ=255)
                                         aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATACCC‑‑TTAAAAAATaaaaaaaaaaaaaaaa                                                                                        >  2:1325188/1‑128 (MQ=255)
                                          aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAAAAAACTT‑‑‑AAAAATaaaaaaaaaaaaaaaaaa                                                                                      >  1:1528262/1‑128 (MQ=255)
                                          aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                       >  1:5586519/1‑128 (MQ=255)
                                           ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTAACTTCACAAATAAAAAAAAA‑‑‑ACAAAACC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                       >  1:5265623/1‑128 (MQ=255)
                                            gTTAATTTAAATAACATAAAATTAATAATTCTTATAATGTAGAAAATTTTTATTAATTTTTTTATTTTTATATCTTCACAAATAAAAAAAAA‑‑‑A‑AATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaa                                                                                     <  1:6476661/128‑1 (MQ=255)
                                            gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaa                                                                                     >  2:5597986/1‑128 (MQ=255)
                                             ttaattaaAATACCATAAACTTAATAATTCTTATAATGTATATCAACGTGATCTATTTTTATATTAAATTATATTCACAAATAAAAAAAAA‑‑‑A‑AAT‑‑CAAAATAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                    >  2:849487/1‑128 (MQ=255)
                                              taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:6074647/1‑128 (MQ=255)
                                               aattaaaattaaATAAAAATAATAAATAATATAATGTTTATCATTTTTTTCTTTTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAA‑‑‑A‑AAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaactaa                                                                                  <  2:2424033/128‑5 (MQ=255)
                                                attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaataaaaa                                                                                 >  2:1738058/1‑126 (MQ=255)
                                                 ttaaAATAAAAAAAAATTAATAATTAATAAAATGTACATCCTCTTTTTATATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaa                                                                                <  1:3833642/128‑6 (MQ=255)
                                                  taaaataaaaTAAACTTAATAATTCTTATAATGTAGATAATATTGATCTATTTTTTTATTTAAATATATTAAAAAATAAAAAAAAAAATAAAATAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:3903383/1‑128 (MQ=255)
                                                  taaAATACCATAAACTTAAAAAATATTAAAATTTAGAACCTCGTGATCTTTTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAA‑‑‑ACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaaa                                                                              <  1:6316605/128‑1 (MQ=255)
                                                   aaaataaaataaaatTAAATATTATTATAATTTATAACCTTGTTATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaactaaaaac                                                                              <  1:1883182/128‑9 (MQ=255)
                                                   aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAA‑‑‑A‑AATAACC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                              >  1:1003267/1‑123 (MQ=255)
                                                    aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCAATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                             >  2:2054672/1‑128 (MQ=255)
                                                     aaaacaaTAAAATTAATAAATTTTAAAATTTACATCATATTGATCTAATTTTTTATTTGTTTAAATTCACAAATAAAAAAAAA‑‑‑A‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                           <  1:4415829/122‑1 (MQ=255)
                                                     aaTAACATAAAATTAAAAATTATTATAATTTATATACTATTGATCTATTTTTTTAATTTTTTAACTTAAAAAATAAAAAAAAA‑‑‑A‑AATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                          <  1:2281192/128‑1 (MQ=255)
                                                       tataaTAAAATTAATAATTATTATAATTTATATCCTTGTTTTTTATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAA‑‑‑A‑AATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                         <  2:1819405/124‑1 (MQ=255)
                                                           aaaaaaTTAATAATTATTATAATTTATATACTCTTTATTTATTTTTTTATTTTTTTATTTTCAAAAATAAAAAAAAA‑‑‑A‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                     <  1:6059729/126‑1 (MQ=255)
                                                            tAAACATAATAATATTTATAATTTATATCCAAGTTTTCTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAA‑‑‑AAAATACCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                    <  1:1416238/128‑1 (MQ=255)
                                                               aattAAAAATTAATATAATTTATATAATCTTGATATTTTTTTTTATTTTTTTATCTTAACAAA‑AAAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                  <  1:706340/126‑1 (MQ=255)
                                                               aCTTAATAATTATAATAATTTAATACCTCGTTAAATATTTTTTTTTTTGTTTATATTAACAAATAAAAAAAAA‑‑‑A‑AATACCCTT‑‑‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                               <  1:3324516/128‑1 (MQ=255)
                                                                 ttAATAATTTTTTTAATTTTTATCTTAGTTATATATTTTTTTATTTTTTTTTATTCAAAAATAAAAAAAAA‑‑‑A‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                               <  2:689686/128‑1 (MQ=255)
                                                                 ataataaTTATTAAAATTTATATACACTTGATATATTTTTTAATTTGTTTATATAAACAAA‑AAAAAAAAA‑‑‑ACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                               <  1:2731440/127‑1 (MQ=255)
                                                                        ttCTTAAAATTTAGATCCACGGGTACTATTTTTTTATTTGTTTATCTT‑AAAAAAAAAAAAAAA‑‑‑AAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                        <  1:5416959/128‑1 (MQ=255)
                                                                               aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCATAAAATTCACtattt                                               >  1:5964725/1‑127 (MQ=255)
                                                                                  ttataaccTAGTGATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAA‑‑‑AAAATACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                              <  2:5326098/122‑1 (MQ=255)
                                                                                    attacatagttaTCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                              <  1:6405270/117‑1 (MQ=255)
                                                                                    ataTCCTCTTTATATATTTTTTTTTTTTTTTATCTT‑AAAAAAAAAAAAAAA‑‑‑AAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                           <  2:1636362/126‑1 (MQ=255)
                                                                                     taaccTCGTTATTTATTTTTTTATTTTTTTATTTTAAAAAATAAAAAAAAA‑‑‑A‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                           <  1:5367912/125‑1 (MQ=255)
                                                                                          tatttttattttttttttttttttTATATTTAAAAATAAAAAAAAA‑‑‑A‑AATTCACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                      <  1:4682058/118‑1 (MQ=255)
                                                                                          tatttttatatttttttattttttTATATTAAAAAATAAAAAAAAA‑‑‑A‑AAT‑‑ACAATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  1:3966702/120‑1 (MQ=255)
                                                                                            ttttatattttttttattt‑tttttatAAACAAAAAAAAAAAAA‑‑‑AAAAAACC‑‑AATAAAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                    <  1:3542734/120‑1 (MQ=255)
                                                                                            ggtatatatttttttattttttTATATTTA‑AAAAAAAAAAAAA‑‑‑AAAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                    <  2:5236276/122‑1 (MQ=255)
                                                                                             ttatatatttttttattttttTATATT‑AAAAAAAAAAAAAAA‑‑‑AAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                   <  1:5781148/123‑1 (MQ=255)
                                                                                             ttatataattttttATTATTTTATAAT‑AAAAAAAAAAAAAAA‑‑‑AAAATCCCCATAAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                      <  1:589102/120‑1 (MQ=255)
                                                                                             tGATTTATTTTTTTATTTTTTTTTCAT‑AAAAAAAAAAAAAAA‑‑‑AAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                   <  2:4813502/128‑1 (MQ=255)
                                                                                             gttttatttttttttttttttttTAATAAAAAAAAAAAAAAAA‑‑‑AAAAAAACC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                     <  2:1531098/121‑1 (MQ=255)
                                                                                                   ttttttttATTTTTTTTTAATAAAAAAAAAAAAAAAA‑‑‑AAAAACCC‑‑‑TT‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                             <  1:5017227/127‑1 (MQ=255)
                                                                                                     ttttttATTTGTTTTTATT‑AAAAAAAAAAAAAAA‑‑‑AAAATACC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                            <  1:1627162/128‑1 (MQ=255)
                                                                                                     ttttttATTTGTTTATCTTCACAAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTATAAATTAAAAAAAAAATAAAATAAACA‑TAAATACAAAACTGATTTGTTAAATATACGAATTATACCAAaatttaatttataa                           >  1:5661545/1‑124 (MQ=255)
                                                                                                     ttttttATATTTTTATATT‑AAAAAAAAAAAAAAA‑‑‑ACAATCACATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                           <  1:295305/128‑1 (MQ=255)
                                                                                                      ttttttttttttTATATT‑AAAAAAAAAAAAAAA‑‑‑ACAAAACC‑‑ATTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                          <  1:4261651/128‑1 (MQ=255)
                                                                                                                tttaaaatCACAAA‑AAAAAAAAA‑‑‑AAAATCCCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa               <  1:4528628/121‑1 (MQ=255)
                                                                                                                     aatttaaaaaaaaaaaaaa‑‑‑aCAATTAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAGATAAGATATTGACa             <  1:4930711/122‑1 (MQ=255)
                                                                                                                     aaaataaaaaaaaaaaaaa‑‑‑aaaaaaaCCAATTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa             <  1:5308031/122‑1 (MQ=255)
                                                                                                                       taaaaaaaaaaaaaaaa‑‑‑aaaaaCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa          <  1:3269969/124‑1 (MQ=255)
                                                                                                                        ttaaaaaaaaaaaaaa‑‑‑aaaATACCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat         <  2:5072865/125‑1 (MQ=255)
                                                                                                                          caAAT‑AAAAAAAA‑‑‑ACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAACCAAAAAACAACAAGTAGTTCATAAAATGACCTATTATACGACAATTTATTTTTATAATAAAatatatcactaatat       >  2:5684187/1‑117 (MQ=255)
                                                                                                                              aaaaaaaaaa‑‑‑aaaATCAC‑‑TTT‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATTatatatatt  <  1:6136106/127‑2 (MQ=255)
                                                                                                                               |                                                                                                                                     
ATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAA‑‑‑ACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATC  >  CP016816/202340‑202597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑