Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4850T.61.7% 208.5 / inf 640intergenic (+263/‑412)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (51/174);  new base . (187/175);  total (263/377)
Fisher's exact test for biased strand distribution p-value = 1.73e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.77e-04

Only 100 of 693 total aligned reads displayed.

GAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202357‑202612
                                                                                                                                |                                                                                                                                 
gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCt                                                                                                                                   <  1:6457541/128‑1 (MQ=255)
  aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCAtta                                                                                                                                 >  2:5554087/1‑127 (MQ=255)
  aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACCtta                                                                                                                                 >  1:5392538/1‑127 (MQ=255)
  aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACCtta                                                                                                                                 >  1:4410021/1‑127 (MQ=255)
   gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCCACtaaa                                                                                                                                >  2:3937970/1‑125 (MQ=255)
   gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCtaaa                                                                                                                                >  2:6648258/1‑125 (MQ=255)
   gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAACAATCCACtaaa                                                                                                                                >  2:6353162/1‑125 (MQ=255)
      aGTGTAAATAATAGAGTTAAGGTTAATAAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCACCtaaaaaa                                                                                                                             >  2:2186575/1‑122 (MQ=255)
        tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAAT‑AAAAAAAAACAATCCCAttaaaaatt                                                                                                                           >  2:5787597/1‑121 (MQ=255)
            aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaa‑aatta‑aaa                                                                                                                   >  1:5767706/1‑128 (MQ=255)
             ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCtt‑‑‑aa‑aaata‑aaaaa                                                                                                                 >  2:5085059/1‑128 (MQ=255)
               aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTATTTATATTTTTATCTTAACAAAT‑AAAAAAAAACAATCCACTT‑‑‑AA‑AAATa‑aaaaaaa                                                                                                               >  2:4622700/1‑128 (MQ=255)
                 taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTACACAAAT‑AAAAAAAAACAATAAC‑‑ATTAAA‑AATTa‑aaaaaaaa                                                                                                              >  2:2304951/1‑128 (MQ=255)
                 taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑TTAAA‑AATTa‑aaaaaaaa                                                                                                              >  2:5021172/1‑128 (MQ=255)
                    attttatgTTAAATAAAATAACATAAACTTAAAAATTATTAAAAATTATTAACACGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAAAACCC‑‑TTAAA‑AAATa‑aaaaaaaaaaa                                                                                                           <  1:3450324/121‑1 (MQ=255)
                     gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑AAATa‑aaaaaaaaaaaaa                                                                                                         >  1:6012243/1‑128 (MQ=255)
                     gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑‑TAAA‑AAATt‑aaaaaaaaaaaaa                                                                                                         >  2:1438511/1‑128 (MQ=255)
                       tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaa                                                                                                        >  1:1599810/1‑128 (MQ=255)
                       tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATAATTAGTATATCTTCACAAAT‑AAAAAAAAACAATAACCATaaaaa‑aaaaa‑aaaaaaaaaaaa                                                                                                          >  2:1617541/1‑128 (MQ=255)
                       tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATGATCTATATTTTTATTTAATTAAATACACAAATAAAAAAAAAAAAAAAC‑‑‑‑ATAAA‑AAATt‑aaaaaaaaaaaaaaa                                                                                                       >  2:3144660/1‑128 (MQ=255)
                       tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATACCC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaa                                                                                                         >  1:5424293/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAATT‑‑‑AA‑AAATa‑aaaaaaaaaaaaaaaa                                                                                                      >  2:6506798/1‑128 (MQ=255)
                        aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACACCAT‑‑‑AA‑AAATa‑aaaaaaaaaaaaaaaa                                                                                                      >  2:6254655/1‑128 (MQ=255)
                         aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaa                                                                                                      >  2:834459/1‑128 (MQ=255)
                         aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaa                                                                                                      >  1:5586519/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaa                                                                                                     >  2:5870503/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAA‑AATTa‑aaaaaaaaaaaaaaaaa                                                                                                     >  2:758814/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaa                                                                                                     >  2:5263761/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaa                                                                                                     >  2:5194456/1‑128 (MQ=255)
                          ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAC‑‑‑ATAAA‑AAATt‑aaaaaaaaaaaaaaaaaa                                                                                                    >  2:3766958/1‑128 (MQ=255)
                            ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAC‑‑‑ATAAA‑AAATt‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:3030811/1‑128 (MQ=255)
                            ttaattaaAAAACCAAAAAATTAATAATTATTTTAAATTAGATACCCGTTTTATATTTTTTTTTTTTTTTTTTATAACAAATAAAAAAAAAA‑AATCCCC‑‑ATAAA‑AATTa‑aaaaaaaaaaaaaaaaaaa                                                                                                   <  2:4956182/128‑1 (MQ=255)
                             taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:6074647/1‑128 (MQ=255)
                             taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:5340977/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTATATACTCTTGATCTATTTTTTTATTATTTTATCTTCAAAAATAAAAAAAAAA‑AATAAAC‑‑ATAAA‑AAATa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:4113760/1‑127 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAATAAAAAAAAAAAAAACCC‑‑ATTAAA‑AATTa‑aaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:1957089/1‑128 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAATAAAAAAAAAA‑AATCCCC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:3539803/1‑127 (MQ=255)
                              aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTATTTATCTATTTTTTTAATTTTTTATCTTCACAAAT‑AAAAAAAAACAATACACTTAAAAA‑TAaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                   >  1:2490181/1‑128 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaataaaaa                                                                                                >  2:1738058/1‑126 (MQ=255)
                               attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:6554536/1‑126 (MQ=255)
                                 taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑‑TAAA‑AAATa‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  2:6216569/1‑123 (MQ=255)
                                 taaAATACCATAAACTTAATAATTATTATAATGTAGATCATCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAA‑AATTa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:3759719/1‑124 (MQ=255)
                                  aaaataaaatAAACATAATAATTATTATAATTTATATTATAGTGTTTTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTaaaa                                                                                            <  2:2396420/128‑1 (MQ=255)
                                  aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAA‑AAATa‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                             >  1:1003267/1‑123 (MQ=255)
                                     aaaacaaaaaaTTAATAATTATTAAAAAGTATAAACTCGTTATCTATTTTTTTATTTGTTTAAATTAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                        <  1:3026309/121‑1 (MQ=255)
                                      tataaTAAAATTAATAATTATTATAATTTATATCCTTGTTTTTTATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                        <  2:1819405/124‑1 (MQ=255)
                                      taacaaaaaaataataaTTCTTATAAATTATTAACTCGTTTTTTATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                        <  1:3903601/117‑1 (MQ=255)
                                      tACAATAAAATTAATAATTATTATAATTTATAAAATATTTTTATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAA‑AAACCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                         <  1:2250896/128‑1 (MQ=255)
                                         caaaaaCTTAATAATTAATATAAATTAGATCCTAGTGAACTATTTTTTTATTTGTTTATCTTAACAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AAAT‑‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                   <  1:4454431/125‑1 (MQ=255)
                                           ataaattAATAATTATTATAATGTTTAATCTTGTTATATATTTTTTTATTTTTTAATATTAAAAAATAAAAAAAAAAAAAACCC‑‑‑TTAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  2:5451092/123‑1 (MQ=255)
                                           aaaaCTTATAAATTTATATAATTTATAACCTAGTGATATATTTTTTTATTTTTTTATCTTAAAAAATAAAAAAAAAA‑AATCCCC‑TTAAAA‑ATTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                                                     <  1:5933305/127‑1 (MQ=255)
                                            aaaaTTCATAATTCTTAAAAATTAGACACTATTGATATATTTTTTTATTTTGTTATATACACAAA‑AAAAAAAAAAAAAACACCAT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                  <  1:5270673/128‑1 (MQ=255)
                                             aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTTTCTTCACAAAT‑AAAAAAAAACAATCCCCTTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAAAACCAAacacaattt                                                                                     >  2:2919190/1‑125 (MQ=255)
                                              aattAAAAATTAATATAATTTATATAATCTTGATATTTTTTTTTATTTTTTTATCTTAACAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                 <  1:706340/126‑1 (MQ=255)
                                              aCTTAATAATTATAATAATTTAATACCTCGTTAAATATTTTTTTTTTTGTTTATATTAACAAATAAAAAAAAAA‑AATACCCTT‑‑‑AA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                              <  1:3324516/128‑1 (MQ=255)
                                                 taataaTTATTAAAATTAAGATCCTCTTTTTAAATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAACAACTAAAAACAAACTCTATTTCtt                                                                            <  2:125896/128‑1 (MQ=255)
                                                       ttCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAA‑TAAAAACAACATAATTTTCTTaaatt                                                                       >  2:5999979/1‑126 (MQ=255)
                                                       ttCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTAttaaataaaaa                                                                       >  1:4985859/1‑119 (MQ=255)
                                                             taATTTATATCCTATTGTTCTATTTTTTTATTTGTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                                <  1:2383299/128‑1 (MQ=255)
                                                              aaTGTAGATCCTCCTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                               <  2:3626619/128‑1 (MQ=255)
                                                                agtattatcaattGATCTATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCAAC‑‑ATAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                             <  1:1767023/116‑1 (MQ=255)
                                                                  tataaccTCGTGATATATTTTTTTATTTGTTAATATT‑AAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                            <  2:5310172/123‑1 (MQ=255)
                                                                  tataTCCTCTTGTTCTTTTTTTTTAATTTTTTATATTAAAAAATAAAAAAAAAA‑AATTCCCTTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                                <  1:6086729/125‑1 (MQ=255)
                                                                   attacatagttaTCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAACAATCCCC‑TTAAAA‑ATTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                             <  1:6405270/117‑1 (MQ=255)
                                                                   agtaccTCGTTATATATTTTTTTATTTGTTTATCTTAAAAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                          <  1:2134180/124‑1 (MQ=255)
                                                                       ccTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAACAA‑‑AAAAACAACAAATAATTCTTAAAATAACC‑ATTATAcccccaa                                                     >  2:3528401/1‑123 (MQ=255)
                                                                        ctagttatatataTTTTTATTTTTTTATCTTCACAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                                      <  1:5848661/119‑1 (MQ=255)
                                                                         ttgttatttatttttttattttttTATCTTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:5492680/120‑1 (MQ=255)
                                                                         tcttGATCTATTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAA‑‑CCC‑ATTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  1:5068706/125‑1 (MQ=255)
                                                                         tatttttattttttttttttttttTATATTTAAAAATAAAAAAAAAA‑AATTCACTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  1:4682058/118‑1 (MQ=255)
                                                                         tagtgttatatttttttattttttTATCTTAACAAATAAAAAAAAAA‑AATCACATT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  1:3139948/120‑1 (MQ=255)
                                                                         tCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACAAAAAACAACAAATATTTATATAAATTCCAAATTAAAAcacagt                                                     >  2:6139150/1‑126 (MQ=255)
                                                                          tttGATATATTTTTTTATTTTTTTAT‑ATAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:5409584/126‑1 (MQ=255)
                                                                          ctgtttatttttttttATTTTTTTTAATTAAAAAATAAAAAAAAAA‑TATACCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                    <  2:571503/119‑1 (MQ=255)
                                                                           gttatatATTTTTTTAATTTTTTAAATTAAAAAATAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATTAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                     <  1:1331907/122‑1 (MQ=255)
                                                                               tatatttttttattttttTAAATACA‑AAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                            <  1:2005743/126‑1 (MQ=255)
                                                                                ttatttttttattttttTATATT‑AAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:2536845/127‑1 (MQ=255)
                                                                                tatattttttttttttttttATTCAAAAATAAAAAAAAAA‑AATCCCCAT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  2:431668/124‑1 (MQ=255)
                                                                                cTATTTTTTTATTTTTTTAACTTAACAAAT‑AATAAAAAACAAACCCCTT‑‑‑AA‑AAATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                              <  1:4946361/128‑1 (MQ=255)
                                                                                 tatttttttattttttTATAATAAAAAATAAAAAAAAAA‑AATCCCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  1:3972754/128‑1 (MQ=255)
                                                                                  tttttttttttttttTATATTAAAAAAT‑AAAAAAAAACAATACCC‑‑‑TAAA‑AAATATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                             <  1:550089/127‑1 (MQ=255)
                                                                                   tttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAA‑AAAAAACAAAAACTTTTTATAAAAATAACAAATTAAACCAAAATTTATTTTTaa                                           >  2:5646504/1‑128 (MQ=255)
                                                                                     ttttttttttttTATATT‑AAAAAAAAAAAAAAAACAAAACC‑‑ATTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                         <  1:4261651/128‑1 (MQ=255)
                                                                                        ttATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  1:1463743/128‑1 (MQ=255)
                                                                                        ttATTTTTTTAT‑TTTAAAAAAAAAAAAAAAAAAATAACATT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  1:834459/128‑1 (MQ=255)
                                                                                         tATTTTTTTATCATAACAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                      <  1:6252229/128‑1 (MQ=255)
                                                                                            ttttttATATTAAAAAATAAAAAAAAAA‑AATACCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATATCACATTTTATTTTTAAAATAAGata                                  <  1:4113760/125‑1 (MQ=255)
                                                                                                  tatatttaaaaaaaaaaaaaaaaaATTCCCAT‑‑‑AA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:1667056/120‑1 (MQ=255)
                                                                                                  tatataaaaaaaaaaaaaaaaaaaaaaaCCTTAAAAA‑TTAAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                <  2:5338097/120‑1 (MQ=255)
                                                                                                  ataataacaAATAAAAAAAAAA‑AATACCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:6348724/122‑1 (MQ=255)
                                                                                                   tCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAAAATATTTAATAAAATTACAAATTAAAAAACAATTTATTTATAAAATAATATAtttaaaa                           >  1:6178682/1‑123 (MQ=255)
                                                                                                   atcttaaaaaaaaaaaaaaaaaaATCCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                            <  1:3619889/121‑1 (MQ=255)
                                                                                                    cTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACAAAAAAAAACAAGAATTTTATAAAATACCCAAATAAACCACATGTTATTTTTAAAAAAAAAATTTGACaaaa                         >  2:3403449/1‑128 (MQ=255)
                                                                                                     ataacaAATAAAAAAAAAACAAACACCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                         <  1:456897/125‑1 (MQ=255)
                                                                                                     ataaaaaaTAAAAAAAAAA‑AATACAC‑‑TTATA‑AATTA‑TAAAAAAAAAAAAAAAAAAACTAATTACAAAATATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                          <  1:2627758/123‑1 (MQ=255)
                                                                                                      taaaaaaaaaaaaaaaaaaaaaCCCCTT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                         <  1:3269969/124‑1 (MQ=255)
                                                                                                         aaaaaaaaaaaaaaaCAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                     <  1:5655583/127‑1 (MQ=255)
                                                                                                          aaaataaaaaaaaaCAATACACTTAATAC‑TTAAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                        <  1:782996/123‑1 (MQ=255)
                                                                                                              aaaaaaaaaaaaATACC‑‑ATTAAA‑AATAA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat                  <  1:2824503/128‑1 (MQ=255)
                                                                                                                     aaaCAATCCCC‑‑TTAAA‑AATTA‑AAAAAAAAAAAAAAAAAAAA‑TAAAAACAAACTAATTTTATTAAAATTACATTTTTTACCAAATTTTTTTTTAAAAAATATATATTTAAATAATATATATATtataat          >  1:5208384/1‑126 (MQ=255)
                                                                                                                                |                                                                                                                                 
GAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATA‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAC  >  CP016816/202357‑202612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑