Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4960A.47.8% 129.5 / inf 421intergenic (+274/‑401)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (45/109);  new base . (9/132);  total (70/351)
Fisher's exact test for biased strand distribution p-value = 3.12e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 765 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTAT  >  CP016816/202367‑202623
                                                                                                                                 |                                                                                                                                  
  aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ttaaaaattaaa‑a                                                                                                                                >  1:3534312/1‑128 (MQ=255)
   ataataGAGATAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTAACAAA‑AAAAAAAAAACAATCACC‑‑ttaaaaattaaa‑aa                                                                                                                               >  2:6223893/1‑128 (MQ=255)
   aaaataTAATTAATGTTAATTAAAATACCATAAAATTAAAAATTATATAAAAGTATAACCATTTTATATAATTTTTTATTTTTTTATCTTCACAAA‑AAAAAAAAAAAAATCCCC‑‑Ataaaaattaaa‑aa                                                                                                                               <  1:193168/126‑1 (MQ=255)
    taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTAATTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATAACCTT‑‑‑AAAAATaaa‑aaaa                                                                                                                             >  1:4308126/1‑128 (MQ=255)
          agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑‑TAAAAAATaaa‑aaaaaaaaaa                                                                                                                       >  2:2509208/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AATACCC‑‑ATAAAAATTaaa‑aaaaaaaaaa                                                                                                                       >  2:6091679/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTAAAAAATTAAATCATCGTGATCTATTTTTAAATATTATTATCTTCAAAAATAAAAAAAAAA‑AATAAC‑‑AATAAAAAATaaa‑aaaaaaaaaaa                                                                                                                      >  2:1198286/1‑128 (MQ=255)
              aattttaattaaAATAACAAAAACATAATAATTTTTATAATTTATTATCTCGTGATTTTTTTTTTTTTTTTTTTATTTTAACAAATAAAAAAAAAA‑AATACCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaa                                                                                                                    <  2:1606541/124‑1 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AATCCAC‑‑‑TAAAAAATtaa‑aaaaaaaaaaaaaa                                                                                                                   >  2:3015332/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAA‑AAAAAAAAAACAATCCCCTTAaaaaaaaaaaa‑aaaaaaaaaaa                                                                                                                      >  2:1683567/1‑128 (MQ=255)
               attttaattaaAATAAAAAAAAATTAATAATTAATATAATTTATAACCTCTTTATCTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATACCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaa                                                                                                                   <  1:3142719/125‑1 (MQ=255)
               aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaa                                                                                                                   >  2:6598191/1‑128 (MQ=255)
               aGGTTAATTAAAAAAACATAAAATTAATAATTATAATAATTTATATACTCGTTATATATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaa                                                                                                                   <  1:2227384/128‑1 (MQ=255)
                ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAC‑‑‑ATAAAAAATtaa‑aaaaaaaaaaaaaaaa                                                                                                                 >  2:3766958/1‑128 (MQ=255)
                 gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaa                                                                                                                 >  2:5597986/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTAATTTTTTTATATTCACAAATAAAAAAAAAAAAA‑‑‑CAAATAAAAAATTaaa‑aaaaaaaaaaaaaaaaaa                                                                                                               >  2:4444073/1‑128 (MQ=255)
                   taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaa                                                                                                               >  2:5315276/1‑128 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                              >  2:6181273/1‑127 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                              >  2:6276562/1‑127 (MQ=255)
                    aattaaAATACCATAAACTTAATAATTATTATAATGAAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAA‑AAT‑‑AAAATTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                              >  1:6398940/1‑127 (MQ=255)
                    aaattaaaTAACATAAAATAAAAAAATTTTATAATTTATATACTCGTTTTTTATTTTTTTTATTTTTTATATT‑AAAAAAAAAAAAAAAAAAAACCCC‑‑ATAAAAATTaaa‑aaaaaaaaaaaaaaaacta                                                                                                              <  2:2254098/123‑4 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                             >  1:6554536/1‑126 (MQ=255)
                     attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAACAATCAAC‑‑TAAAAAATTaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                             >  2:235494/1‑126 (MQ=255)
                      ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                            >  2:5882116/1‑125 (MQ=255)
                       taaAAAACCAAAAACATAAAAATTATTATAATTTATCACCTCTTGATCTATTTTTTTTTTTTTTTTTATTCAAAAATAAAAAAAAAAAAAACCC‑‑‑TTAAAAAATaaa‑aaaaaaaaaaaaaaaactaaaa                                                                                                           <  2:1826192/128‑7 (MQ=255)
                       aaaaaTATAATAAAATTAATATTTATATTAATTTATATACACTTTATTTTTTTTTTTATTTGTTTA‑ATATAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTaaa                                                                                                          <  1:3048629/127‑1 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaa‑aaaaaaaaaaaaaaaaaaaataa                                                                                                          >  2:5789904/1‑123 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAAAAATaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:1003267/1‑123 (MQ=255)
                        aaaaTACCATAAACTTAATAATTCTTATAATGTAGATAATCGTGATCTATTTTTTTATTTTTTTATATTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAAATaaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:3563099/1‑123 (MQ=255)
                         aaataaaataAACTTAATAATTATTATAATTTAGTACCTCTTTATCTATTTTTTTATTTTTTTATAAT‑AAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAaaac                                                                                                       <  2:4638192/128‑1 (MQ=255)
                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAAACCC‑‑TTAAAAATTAaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:1346949/1‑128 (MQ=255)
                         aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCAATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:2054672/1‑128 (MQ=255)
                           ataaaaTAAAAATAATAAATATTATAATTTATATCATCTTTTTATAATTTTTTATTTTTTTATAAT‑AAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                      <  1:3692356/123‑1 (MQ=255)
                           aaaaaaataaattAAAAAATCTTTTAATTTATTTCCTCGTTATCTTTTTTTTTTTTTTTTTATATTAAAAAAT‑AAAAAAAAACAATCCCC‑TTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAACTaaaaa                                                                                                        <  1:3954254/117‑1 (MQ=255)
                            tatcATAAAATTATTAATTATTAAAATTTATTTCATGGTTTTGTTTTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAgaacaa                                                                                                     <  1:3787751/125‑1 (MQ=255)
                               aaaaaaattaaaaattaTTATAATTTAAATACTATTTATCTATTTTTTTATTTTTTTATATTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                                <  1:3282918/125‑1 (MQ=255)
                                aaaaaaTTAATAATTATTATAATTTATATACTCTTTATTTATTTTTTTATTTTTTTATTTTCAAAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                                 <  1:6059729/126‑1 (MQ=255)
                                  aaaaTTCATAATTCTTAAAAATTAGACACTATTGATATATTTTTTTATTTTGTTATATACACAAA‑AAAAAAAAAAAAAACACCAT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                               <  1:5270673/128‑1 (MQ=255)
                                        aataatTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAA‑‑TAAAAAAAAACTCTAttaaataa                                                                                       >  2:3342805/1‑122 (MQ=255)
                                          taatTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAATAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                        >  2:3957710/1‑128 (MQ=255)
                                             ttCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTAttaaataaaaa                                                                                    >  1:4985859/1‑119 (MQ=255)
                                                    aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCATAAAATTCAC‑tattt                                                                          >  1:5964725/1‑127 (MQ=255)
                                                    aaTGTAGATCCTCCTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑tatt                                                                           <  2:3626619/128‑1 (MQ=255)
                                                      agtattatcaattGATCTATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCAAC‑‑ATAAAAAAT‑‑A‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑tattat                                                                         <  1:1767023/116‑1 (MQ=255)
                                                          gATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑AAAAAACAAAATATATTTATTAAAATTcaaaattaaaaa                                                                       >  1:5589538/1‑117 (MQ=255)
                                                            taatttttatatatttttttattttttTATATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACca                                                                     <  1:5436689/117‑1 (MQ=255)
                                                              cTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAA‑‑TAAAAAAAAAATATATTTATTAAAAATCCA‑tattaaaaaaaattt                                                                >  2:5153587/1‑118 (MQ=255)
                                                               tttttttttatttttttattttttTATATTAACAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑tt                                                                <  1:5508246/120‑1 (MQ=255)
                                                               ttgttatttatttttttattttttTATCTTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttt                                                               <  2:5492680/120‑1 (MQ=255)
                                                               tctttttatatttttttattttttTATCTTCAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttt                                                               <  1:4495538/120‑1 (MQ=255)
                                                               tatttatatatttttttattttttTATAATAAAAAATAAAAAAAAAA‑AATACCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑tt                                                                <  1:2723108/120‑1 (MQ=255)
                                                                tttGATATATTTTTTTATTTTTTTAT‑ATAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttt                                                               <  2:5409584/126‑1 (MQ=255)
                                                                attgtataaTTTTTTTATTTGTTTAACTTAACAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttt                                                               <  2:3519773/120‑1 (MQ=255)
                                                                 gtttttttttttttttttttttAATATACAAAAAAAAAAAAAAAAAAAAACCATT‑‑‑AAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑tttt                                                              <  2:5263222/120‑1 (MQ=255)
                                                                 ctGATCTATTTTTTTATTTGTATATCATAAAAAATAAAAAAAATA‑AATACCCTT‑‑‑ATAAATTAA‑AAAAAAAAAAAAAATATACTAAAAACATACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑tttt                                                              <  1:2568313/127‑1 (MQ=255)
                                                                  ttatataattttttATTATTTTATAAT‑AAAAAAAAAAAAAAAAAAATCCCCATAAAAAATAAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑tt                                                                <  1:589102/120‑1 (MQ=255)
                                                                   taTCTATTTTTTTATTTTTTTATCAT‑AAAAAAAAAAAAAAAAAAAACCCC‑TTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑tttt                                                              <  1:4010445/127‑1 (MQ=255)
                                                                    atatttttttttATTTGTTTA‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttttatt                                                           <  2:5662517/123‑1 (MQ=255)
                                                                     tatatttttttattttttTATATT‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttttattt                                                          <  1:6322275/126‑1 (MQ=255)
                                                                      ttATTTTTTTTTTTGTTTATAATTA‑AAAAAAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttttatttt                                                         <  1:235494/127‑1 (MQ=255)
                                                                       tatttttttattttttTATCTT‑AAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttttatttt                                                         <  1:6091679/128‑1 (MQ=255)
                                                                       tATTTTTTTTTTTTTTTAAATTTAAAAATAAAAAAAAAA‑AATACC‑‑ATTAAAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACa‑ttttatttt                                                         <  1:2054672/128‑1 (MQ=255)
                                                                        atttttttatttttttAT‑ATAAAAAATAAAAAAAAAA‑AAT‑‑ACTCTTAAAATATTAA‑AAAAAAAAAAATAAAAATCTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTa                                                       <  1:417248/128‑1 (MQ=255)
                                                                         tttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTATATTAATTAAAATTCCC‑TATTATACAAAA‑TTTTATTTTTaaaa                                                    >  1:5347690/1‑128 (MQ=255)
                                                                           tttttATTTTTTAAACATAACAAATAAAAAAAAAA‑AAACCACTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATa                                                  <  2:5340015/128‑1 (MQ=255)
                                                                             tttatttttttattttCA‑AAAAAAAAAAAAAAAAATCCCCTTAAAAATTAAAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTaaa                                                     <  2:831293/128‑1 (MQ=255)
                                                                              ttATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATaa                                                 <  1:1463743/128‑1 (MQ=255)
                                                                               tATTTTTTTATCATAACAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATaa                                                 <  1:6252229/128‑1 (MQ=255)
                                                                               tATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATAACC‑‑‑TAAAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGa                                               <  2:3110920/128‑1 (MQ=255)
                                                                               tATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑AAAAAACAAACGCTATTTATTAAAATTCCCTTATTA‑AACACATTTTTATTTTTataatat                                                 >  2:736631/1‑127 (MQ=255)
                                                                                aTTTTTTTAT‑TTTAAAAAAAAAAAAAAAAAAATAACC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAg                                                <  1:128032/128‑1 (MQ=255)
                                                                                 ttttttTATATTTAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGa                                               <  1:1595041/128‑1 (MQ=255)
                                                                                     tttATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAA‑AAAAAATTTTTATTAAAATTACA‑TATTATAAAAAA‑TATTATATTAaaaaaatataattta                                         >  1:3426799/1‑117 (MQ=255)
                                                                                       tataTTCAAAAAT‑AAAAAAAAACAATACCCTT‑‑‑AAAAAT‑‑T‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACat                                      <  2:4970571/128‑1 (MQ=255)
                                                                                        tatatttaaaaaaaaaaaaaaaaaATTCCCAT‑‑‑AAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACa                                       <  1:1667056/120‑1 (MQ=255)
                                                                                         tCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑TAAAAACAAAAAATATTTAATAAAATTACA‑AATTAAAAAACA‑ATTTATTTATAAAATAATATAtttaaaa                                      >  1:6178682/1‑123 (MQ=255)
                                                                                             ttaaaaaaaaaaaaaaaaaATACCCAT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACataat                                   <  2:5072865/125‑1 (MQ=255)
                                                                                              acaAATAAAAAAAAAA‑AATCCCATT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAatata                                <  1:5057318/128‑1 (MQ=255)
                                                                                               aaaaaaaaaaaaaaaCAATCCCCTT‑‑‑AAAAAT‑TA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAatata                                <  1:5655583/127‑1 (MQ=255)
                                                                                                    taaaaaaaaaaaaTACAC‑‑TTAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATc                            <  1:825953/127‑1 (MQ=255)
                                                                                                     aaaaaaaaaCAAAACCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATc                            <  1:764535/128‑1 (MQ=255)
                                                                                                      aaaaaaaaCAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAatatatatta                           <  1:4436571/128‑3 (MQ=255)
                                                                                                         aaaaaCAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAA‑AAAAAACAAACAATATTTATTAAAATTCAA‑ATTTATAACAAA‑TTTTATTTTTAAAAAAATAAATTTAAaaaataattataaatta                       >  2:6480724/1‑117 (MQ=255)
                                                                                                          aaaaCAATCCCC‑‑TTAAAAATTAAA‑AAAAAAAAAAAAAAAAAAATAAAAACAAAATAAATTTATTAAAAATACA‑TATTAAACACAA‑TTTTATTTTAAAAATAAAATAATAAAATAATAAAtatatatat                       >  2:6029818/1‑125 (MQ=255)
                                                                                                            aaCAATCCCCTT‑‑‑AAAAATTAA‑AAAAAAAAAAAAAAAAAA‑TAAAAAAAAACAATATTTATTAAAATACCA‑TATTAAACAAAA‑TTTTATTTTTAAAATAATATTTTAAAATAATAAAAATATAatatata                   >  2:5447106/1‑128 (MQ=255)
                                                                                                             aaaaaattaaattAAAAAAT‑AA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata                     <  1:2454047/117‑1 (MQ=255)
                                                                                                               aaaatcacattAAAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                    <  1:5398661/119‑1 (MQ=255)
                                                                                                               aaaataaccttaaaaattaaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                    <  1:2929304/119‑1 (MQ=255)
                                                                                                                acaaacccctaaaaaat‑ta‑aaaaAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                  <  2:5720784/119‑1 (MQ=255)
                                                                                                                aaaaatacactaaaaatata‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                   <  1:5787597/117‑1 (MQ=255)
                                                                                                                  ataacattaaaaattaaa‑aaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata                 <  1:6476545/122‑1 (MQ=255)
                                                                                                                  aataccaataaaaat‑aa‑aaaaAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAGAATAAGATATTGACATAATATATATCTAATATATataa                <  2:6363911/119‑1 (MQ=255)
                                                                                                                   ataccattaaaaattaa‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa                <  1:5716614/120‑1 (MQ=255)
                                                                                                                    taagcataaaaataaataaAAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTACC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTTACATAATATATATCTAATATATataa                <  1:4631965/121‑1 (MQ=255)
                                                                                                                      acataaaatataaa‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc             <  2:4239897/125‑1 (MQ=255)
                                                                                                                      acacataaaaaata‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc             <  2:2817862/122‑1 (MQ=255)
                                                                                                                       cttaaaaattaaa‑aaAAAAAAAAAAAAAAAACAAAAAACAAACTCTATTTTTTAAAATAACC‑TATTATAACACA‑TTTTTTTTTTAAAATAATATTTTTAAATAATATATATATAatattattattaat            >  1:5167457/2‑118 (MQ=255)
                                                                                                                        cttaaaaattaa‑aaaAAAAAAAAAAAAAAAATAAAAACAAAAAATATTAATAAAAATAAAA‑TATTAAACAACA‑TTTAATTTTTAAAATAATAAATTTAAAAATAATAAATATTATATATAAAataata           >  1:49485/4‑128 (MQ=255)
                                                                                                                        aatatataaaaa‑aaaaaaaaaaaaaaaaaaCTATAAATAAACTCTATTTCTTAAAATTCAC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta           <  1:4734233/119‑1 (MQ=255)
                                                                                                                          taaaaattta‑aaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata         <  1:711726/127‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                  
TAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAA‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCC‑TATTATACCACA‑TTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTAT  >  CP016816/202367‑202623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑