BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	311,150	0	A	.	61.7%	1071.1 / inf	1450	intergenic (‑73/‑241)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand): ref base A (353/200); new base . (482/407); total (836/614)
Fisher's exact test for biased strand distribution p-value = 3.60e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.75e-01

Only 100 of 2021 total aligned reads displayed.

TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277

tACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑ta                                                                                                                                 >  2:3620654/1‑128 (MQ=255)

 aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCACAACATATATAACATACATTCAT‑‑‑‑tat                                                                                                                                >  2:3718273/1‑128 (MQ=255)

 aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tat                                                                                                                                >  2:5679447/1‑128 (MQ=255)

   cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAACTTCAT‑‑‑‑tatat                                                                                                                              >  2:4257506/1‑128 (MQ=255)

         taataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTTTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatat                                                                                                                        >  1:4702799/1‑128 (MQ=255)

           ataaataaTCAAAATGATCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTACATACGATTAAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatat                                                                                                                      <  2:4616498/128‑1 (MQ=255)

            taaCTAATCAAAATTAACTTAAAATTGTATTTAACTTTATCATATTACACAAACAATAATAAAATATAATATATTTGTTACATACGATTAAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatata                                                                                                                     <  1:4546763/128‑1 (MQ=255)

              aataataaaaattaaattaaattTTTAAATAACTTTTTCATTTTACACACCCCTTTATATAAAATAAAATACTTGTTAAATAAGATTCAAAACATATATAACATAAATTCAT‑‑‑‑tatatatatatatata                                                                                                                   <  2:2583346/120‑1 (MQ=255)

                tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatata                                                                                                                 >  1:1886308/1‑128 (MQ=255)

                  atacAAATTAAATTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatata                                                                                                               <  2:3374246/125‑1 (MQ=255)

                  aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatat                                                                                                                        <  1:4212424/119‑1 (MQ=255)

                   taaaaattaaattAATATTTTTATTAACTTTTTTTTTTTAAACACCCCTTTTTAAAAAATAAAATATTTGTTATATACGATTCAAAAAATATATAAAATACATTCAT‑‑‑‑tatatatatatatatatatat                                                                                                              <  2:4457588/125‑1 (MQ=255)

                      aaattaaattAAAATTTTAATTAACTTTTTAATTTTACAAAAAAATTATTAAAAAATAAAATACTTGTTACATACGATTAAAAACATATATAAAATAAATTCAT‑‑‑‑tatatatatatatatatatatata                                                                                                           <  2:895730/128‑1 (MQ=255)

                      aaaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatata                                                                                                           >  1:3732778/1‑128 (MQ=255)

                       aaTGATATTAAAATTGTAATTTACTTTTTTATTTTACACACCCCTTATAAAAAAATAAAATAATTTTTAAATACGATTCAAAACATATATAAAATACATTCAT‑‑‑‑tttatatatatatatatatatataa                                                                                                          <  2:5931938/128‑2 (MQ=255)

                       aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTAGATACGATTCAAAACATATATAACATACATTCTT‑‑‑‑tatatttttatttttatatatatat                                                                                                          >  2:2781518/1‑128 (MQ=255)

                       aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTAAACACCACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataa                                                                                                          <  1:965755/128‑2 (MQ=255)

                       aaTGAACTTAAAATTGTAAATAACTTTTTCATTTTACACACACCTTATTTAAAAATAAAATATTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatataatg                                                                                                          <  1:3368402/128‑4 (MQ=255)

                          taaCTAAAAATTGTAATTAACTTTTTAATTTTAAACACACCTTATTAAAAAATAAAATACTTGTTAAATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatataatgcaa                                                                                                       <  1:4826585/127‑7 (MQ=255)

                              ttAAAATTGTAATTAACTTTTTTATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATAATATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAata                                                                                                 <  1:1665900/128‑1 (MQ=255)

                              ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatatataatcaaata                                                                                                   >  1:1380110/1‑120 (MQ=255)

                              ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATaaatcaa                                                                                                   >  1:4910338/1‑123 (MQ=255)

                               tAAAATTTTAATTAACTTTTTCATTTTACACACCACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAatat                                                                                                <  2:2212836/128‑1 (MQ=255)

                               tAAAATAGTAATTAAATTTTTCATTTTAAACACCCCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑tatatatatatatatatatataatgcaatatgt                                                                                                  <  2:554921/128‑12 (MQ=255)

                                    ttttaataaACTTTTTAATTTTAAACACACCATATTAAAAAAAAAAATACTTGTTAAATAATATTAAAAAAATATATAACATAAATTAAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTa                                                                                             <  1:1252210/125‑1 (MQ=25)

                                    ttatAATTCAATTTATAATTTAACACACCAAATATAAAAAAATAAAATAATTGTTACATAATATTAAAAAAATATATAAAAAACATACAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATg                                                                                         <  1:605068/125‑1 (MQ=255)

                                    ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATA‑AAT‑CAATATGTaaa                                                                                           >  1:6401553/1‑128 (MQ=255)

                                    ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTaaa                                                                                           >  1:4306400/1‑128 (MQ=255)

                                    ttGTAATTAACTTTTTCATTTTACAAACCCATTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATg                                                                                         <  2:5040230/128‑1 (MQ=255)

                                     tGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCTATATGTattt                                                                                          >  2:4743113/1‑125 (MQ=255)

                                       tAATTAACTTTTTCATTATACACACCCCATATTAAAAAAAAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGa                                                                                        <  1:2875781/128‑1 (MQ=255)

                                        aaTTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATACAATATGTAAATGaa                                                                                       >  1:3620837/1‑128 (MQ=255)

                                           tAACTTTTTAATTTTAAACACACCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAat                                                                                    <  1:6277131/128‑1 (MQ=255)

                                            aattttttCATTTTAAACACAACTTATTAAAAAATATAATAATTTTTTCATAATATTCAAAAAATATATAACATACATTAATTATATATATATATATATATATATATATATAATGCAATATGTAAATg                                                                                         <  2:4357470/125‑1 (MQ=19)

                                              cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGaaatatct                                                                                 >  1:5410509/1‑123 (MQ=255)

                                              cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAatatt                                                                                 >  1:2472222/1‑127 (MQ=255)

                                                  ttgttttaaaacacCCATTATTAAAATATATAATACTTGTTACAAAATATTCAAAAGATATATAACATACATTC‑T‑‑‑‑T‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGtat                                                                             <  2:6165670/118‑1 (MQ=255)

                                                   tCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATACAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATCTAAATCAAAATATGTtata                                                                            >  2:3260239/1‑128 (MQ=255)

                                                    aaTTTTACACACATCATATTAAAAAAAAAAATATTTGTTAAATAATATTAAAAAAATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGtat                                                                             <  2:1393274/127‑1 (MQ=37)

                                                     aTTTTACACACCCATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAg                                                                        <  2:4915445/128‑1 (MQ=255)

                                                     aTTTTAAACACACATTATTAAAAAATAAAATAATTGTTACATAATATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                          <  1:2714511/128‑1 (MQ=255)

                                                      ttttAAACAAACATTATTAAAAAATAAAATAATTTTTACATAAGATTAAAAAAATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataa                                                                           <  2:2305378/128‑1 (MQ=37)

                                                        ttACACACCCCTTATTAAAAAATAAAATACTTGTGACATACGATTCACAACATAAAGAACATACATTCAT‑‑‑‑TATATATATATATATATATAT‑T‑TAAGGAAATTTGGAAATGAAACTAAGATAGATTAGc                                                                       >  2:6511182/1‑128 (MQ=255)

                                                         tACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑‑‑tatatatatatatat                                                                                                                    <  1:577344/84‑1 (MQ=255)

                                                             cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATATCAACCg                                                                  >  2:4080180/1‑128 (MQ=255)

                                                             cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTta                                                              >  1:714022/1‑128 (MQ=255)

                                                              acCCCTTATTAAAAAATAAAATACTTTTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGttt                                                               <  2:3961762/128‑1 (MQ=255)

                                                                cccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAAAA‑‑AAATATTTAAATTAAAATATTTTATAATAGCAAccttat                                                               >  1:6165037/1‑124 (MQ=255)

                                                                   ttattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGGTATAATATCAACCGTTtata                                                            >  1:2180293/1‑128 (MQ=255)

                                                                      ttaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCACCCTTTTATaa                                                           >  1:3514957/1‑128 (MQ=255)

                                                                      ttaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATA‑AA‑GCAATATGTAAATTAAAATATGATATAATATCAACCTTTTATaaat                                                         >  1:2652881/1‑127 (MQ=255)

                                                                        taataataaaataaTTTTTAAATAATAATAAAAAAATATATAAAATACAATCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGAATAATAGCAACCGTTTATAAAGTa                                                       <  1:3269504/124‑1 (MQ=255)

                                                                        aaaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAT‑‑TTCAATATGTATATGAAAATATGGTATAATATCAACCGTTTATAATGTa                                                       >  2:5144384/1‑128 (MQ=255)

                                                                         aaaaaTAAAATACTTGTTACATACGAATAAAAACATATATAACATAAATTAAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaa                                                      <  2:6048376/128‑1 (MQ=255)

                                                                          aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                     >  1:5661037/1‑128 (MQ=255)

                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATTCAATATTTATATTAAAATATGGTATAATAGAAACCGTTTATAAAGTaaa                                                     >  2:149062/1‑128 (MQ=39)

                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTAAATATGTAAATGAAAATATGTTATAATATCAACAGTTTATAAAGTaaaaa                                                   >  1:2309537/1‑128 (MQ=255)

                                                                             ataaaataCTTGTTAGATAATATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaa                                                  <  2:662733/128‑1 (MQ=255)

                                                                                 aataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTTTATAATAGCAACCTTTTATAAATTAAAAAAATAg                                              >  2:1627417/1‑128 (MQ=255)

                                                                                 aataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGAAATATTTAAATTAAAATATGGTATAATAGCAACCGTGTATAAATTAAAAAAATAGTa                                            >  2:5472461/1‑128 (MQ=255)

                                                                                   taCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAATATATGGTATAATAGCAACCTTTTATAAAGTataaaaaattat                                            >  2:2680628/1‑123 (MQ=255)

                                                                                   taCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                          <  1:5922929/128‑1 (MQ=255)

                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATTTTAATGAAAATTTGTTATAATAGAAACCGTTTATAAAGTAAAAAAATAGTaaa                                          >  2:1738911/1‑128 (MQ=255)

                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATTTAAATTAAAATATGTTATAATAGCAAACTTTTATAAATTAAAAAAATataaaa                                          >  1:2047124/1‑123 (MQ=255)

                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATTTAAATGAAAATATGGTATAATATCAACCTTTTATAAAGTAAAAAAATAGTaaa                                          >  1:1032610/1‑128 (MQ=255)

                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataa                                                                           <  1:5026283/95‑1 (MQ=255)

                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                          <  1:6623268/128‑1 (MQ=255)

                                                                                     attGTTAGATACTATTCAAAACATATATAACATTAATTAAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                          <  2:1147715/127‑1 (MQ=255)

                                                                                      ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTATATATGTAAAAGAAAATATGGTATAATAGCAACCATTTATAAAATAAAAAAATATTAAat                                         >  2:6397712/1‑128 (MQ=255)

                                                                                      ttGTTACATACGATTCAAAACATAAATAACATACATTCAT‑‑‑‑TA‑AT‑TATATATATATATATATATAATGCAATATTTAAATTAAAATATTGTATTATAGCACCCGTTTATAAAGTAAAAAAATACTAAat                                         >  2:4155918/1‑128 (MQ=255)

                                                                                       ttttACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                        <  1:1528353/126‑1 (MQ=255)

                                                                                       tGTTACATACGATTCAAGACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAAATCAATATGTAAATGAAAATATTGTATAATATCAAACTTTTATAAAGTAAAAAAATATTaaa                                          >  1:2564672/1‑128 (MQ=255)

                                                                                       tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATTTAAATGAAAATATGTTATAATAGCAACCGTATATAAATTAAAAAAATATTAAata                                        >  1:5277378/1‑128 (MQ=255)

                                                                                        gTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                         <  1:5522009/128‑1 (MQ=255)

                                                                                         ttACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAAACGTTTATAAAGTAAAAAAATAGTAAAtata                                      >  1:3031362/1‑128 (MQ=255)

                                                                                         ttAAATATGATTAAAAAAATATATAAAATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAAtata                                      <  1:3905865/128‑1 (MQ=255)

                                                                                          tACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACAGTTTATATATTAAAAAAATAGTAAATAtac                                     >  1:3150527/1‑128 (MQ=255)

                                                                                             aTACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATATAGTAAAAAAATAGTAAATAtactac                                  >  2:2433510/1‑128 (MQ=255)

                                                                                              taagATTCAAAAAATATATAAAATAAATT‑AT‑‑‑‑T‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                 <  2:3505455/125‑1 (MQ=255)

                                                                                              tACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAtt                             >  2:1263130/1‑128 (MQ=255)

                                                                                                ataatCAAAAAATATATATCATAAATTC‑‑‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                               <  2:6280524/124‑1 (MQ=255)

                                                                                                agATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAtt                             <  1:5126155/127‑1 (MQ=255)

                                                                                                    taaaaaaaTATATAAAATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACt                         <  2:5245109/126‑1 (MQ=255)

                                                                                                      aaaaCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAAATAAATATTTAAATTAAAATATGATATAATAGCAACCGTTTATAAAATAAAAAAATAATAAATataataaatatata                           >  2:3163761/1‑120 (MQ=255)

                                                                                                       aaaCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATTAAAATATTGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTTACta                        >  2:5791095/1‑128 (MQ=255)

                                                                                                       aaaCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGTTATAATAGCAACCTTTTATAAAGAAAAAAAATAATAAATATACTAAATATATACta                        >  1:836482/1‑128 (MQ=255)

                                                                                                            tatataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATTAAAAATATAAATCAAAATAATGTATAATAGCAAACTATTATAAATAAAAAAAATATAAAATATAATAATTATATAATAATaaa                   >  1:4089969/1‑128 (MQ=255)

                                                                                                             atataACATACATTCAT‑‑‑‑TATATATATATATATATATATATA‑AAT‑CAATATGTAAATTAAAATATTTTATAATAGCAACATTATATAAAAAAAAAAAATATTAAATATAATAATTATATAATAATaaaa                  >  1:6494706/1‑128 (MQ=255)

                                                                                                             atataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATTAAAATATTTTATAATAGCAACATTTTATAAATTAAAAAAATAGTAAATATACTACTTATTTACTAATaaaa                  >  1:1145520/1‑128 (MQ=255)

                                                                                                             atataAAATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaataa                    <  2:1925376/128‑1 (MQ=255)

                                                                                                               ataACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATTAAATATTTAAATTAAAATATGGTATAATAGAAACATTTTATAAATTAAAAAAATATTAAATATAATAATTATTTACTAATaaaa                  >  1:443370/1‑128 (MQ=37)

                                                                                                                taACATAAATTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt               <  2:3873756/128‑1 (MQ=255)

                                                                                                                  tataaaatacat‑‑‑‑tAATTATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt               <  2:5375780/119‑1 (MQ=39)

                                                                                                                  acatacatTCAT‑‑‑‑TATATATATATATATATATATATATAATTAAATATATAAAAAAAAATATTATAAAATAGCAACAGTTTATAAAAAAAAAAAATAATAAATATAAAAATTATAAAaaaataaaatat               >  2:483322/1‑126 (MQ=16)

                                                                                                                  acatacatTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATAAGGTATAATAGCAACCGTTTATAAAGTAAAAAAAAAGTAAAAAAAAAAACAATATACTAATAAAATCTAt             >  2:18576/1‑128 (MQ=255)

                                                                                                                   catacatTCAT‑‑‑‑TATATATATATATATATATATATATAATGAAATATGTAAATTAAAATATTTTATAATAGAAAAAGTTTATAAAGTAAAAAAATATTAAATATACTAATTATTTACTAatataatata              >  1:1770404/1‑128 (MQ=37)

                                                                                                                    atacatTCAT‑‑‑‑‑‑TATATATATATATATATATATATAATGCAATATTTAAATGAAAATATGGTATAATAGCAACCGTTTATAATGAAAAAAAATAGTAAATATACTACTTTTTTACTAATAAAATCTAttt           >  2:2052673/1‑128 (MQ=255)

                                                                                                                    ataaatTAAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt             <  2:2919334/128‑1 (MQ=255)

                                                                                                                         tgcattatatatatatatatatatatatatatataATGAAATATGTATATTAAAATATGTTATAATATAAACAGTATATAAAATAAAAATAAAGTAAAAATACTACTTATATACTAATAAAATCTAtt            >  2:3037535/10‑128 (MQ=25)

                                                                                                                           ttcattatatatatatatatatatatatatataATTAAATATTTAAATGAAAATATTTTATAATAGAAACAGTTTATAAAGTAAAAAAATATAAAATATTATAAATATTAAATAAAAAAATCTAtttt          >  2:775444/8‑128 (MQ=19)

TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`