Predicted mutation
evidence seq id position mutation annotation gene description
RA CP016816 484,795 A→T intergenic (‑104/+67) JCVSYN2_02220 ← / ← JCVSYN2_02225 hypothetical protein/50S ribosomal protein L7/L12

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816484,7950AT99.3% 13552.1 / NA 4378intergenic (‑104/+67)JCVSYN2_02220/JCVSYN2_02225hypothetical protein/50S ribosomal protein L7/L12
Reads supporting (aligned to +/- strand):  ref base A (26/3);  new base T (2041/2306);  total (2069/2309)
Fisher's exact test for biased strand distribution p-value = 2.11e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 4505 total aligned reads displayed.

TTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTTCAGCT  >  CP016816/484670‑484919
                                                                                                                              |                                                                                                                            
   aaaaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACACGATTATATAATTATATTTTTTTTTAat‑ataaaac                                                                                                                         >  2:2669846/1‑127 (MQ=255)
     aaaTAGTCAACACTCAAAGATTTACTCCTTTTATCGTTGACCAAAAAATAAGATAGACCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaagc                                                                                                                       <  2:4721735/128‑3 (MQ=255)
      aaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTACACTACACTCGATTATTTAAGTATATTTTTTTTTTAT‑AGAAAAAGCa                                                                                                                      >  2:2195160/1‑128 (MQ=255)
        tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                                    >  1:5315292/1‑128 (MQ=255)
        tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                                    >  1:8249339/1‑128 (MQ=255)
        tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                                    >  2:6366636/1‑128 (MQ=255)
         aGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATAATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAtt                                                                                                                   >  1:8759189/1‑128 (MQ=255)
          gTCAAAACTCATAGATTTAATCCTTATATAGTTGACCAAAAAATAAGATAGAGAATAGCAGAATCTCTTAACAACTAAACTACACTAGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTa                                                                                                                  <  1:3333938/128‑1 (MQ=255)
           tCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaa                                                                                                                 <  1:9447803/128‑1 (MQ=255)
            cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                                <  2:8169771/128‑1 (MQ=255)
            cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                                <  1:3918400/128‑1 (MQ=255)
            cAAAAATCATAGATTTAATGCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                                <  2:5985990/128‑1 (MQ=255)
               aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                             <  1:2988924/128‑1 (MQ=255)
                 cTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacacac                                                                                                           <  2:2369174/128‑1 (MQ=255)
                  tCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAAcacaca                                                                                                          >  2:7603793/1‑128 (MQ=255)
                   cATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACaa                                                                                                         <  1:7625283/128‑1 (MQ=255)
                    aTAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACaaa                                                                                                        <  1:1836306/128‑1 (MQ=255)
                       gATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAAc                                                                                                     <  1:6621082/128‑1 (MQ=255)
                         tttAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTc                                                                                                   <  1:6452384/128‑1 (MQ=255)
                           tAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                                 >  2:8662762/1‑128 (MQ=255)
                           tAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                                 >  2:5767497/1‑128 (MQ=255)
                           tAATCCATTTATAGTTTACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACATCTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                                 <  2:8999755/128‑1 (MQ=255)
                            aaTCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAcc                                                                                                <  2:3349536/128‑1 (MQ=255)
                             aTCCTTTTATAGTTGACGAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAcca                                                                                               <  1:3182380/128‑2 (MQ=255)
                             aTCCTTTAATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAcca                                                                                               <  1:279404/128‑2 (MQ=255)
                               ccTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccata                                                                                             <  1:2637420/128‑4 (MQ=255)
                               ccTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAt                                                                                             <  1:5139194/128‑1 (MQ=255)
                               ccTTTTATAGTAGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAATATAAAAAGCAATTAAACACACAAAAACTCAccat                                                                                              <  2:5095035/128‑3 (MQ=255)
                               catattATAGTTAACAACAAAATAATATAGAGCTTATCATAATCTCTTAAAAAATAAAATAAAATCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACAAACAAAAACTCACCCAt                                                                                             <  2:5474823/124‑1 (MQ=255)
                                cTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccataa                                                                                            <  1:1500961/128‑5 (MQ=255)
                                cTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAtt                                                                                            >  2:4214495/1‑128 (MQ=255)
                                  tttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATAATTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccataatg                                                                                          <  1:5513961/128‑7 (MQ=255)
                                   ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATg                                                                                         <  2:7959519/128‑1 (MQ=255)
                                    tataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTTAACACACAAAAACTCACCCAtatatg                                                                                        >  2:4921650/1‑123 (MQ=255)
                                    tataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCCCCCATTATgg                                                                                        >  1:4805927/1‑128 (MQ=255)
                                    tataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATgg                                                                                        <  2:4047039/128‑1 (MQ=255)
                                      taGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTg                                                                                      <  1:2141874/128‑1 (MQ=255)
                                      taGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTg                                                                                      >  1:2464648/1‑128 (MQ=255)
                                       aGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCATCCATTATGGt                                                                                       <  2:5281669/126‑1 (MQ=255)
                                       aGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGa                                                                                     <  2:7422432/128‑1 (MQ=255)
                                        gTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAg                                                                                    >  2:37080/1‑128 (MQ=255)
                                              cAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaa                                                                              >  2:1372619/1‑128 (MQ=255)
                                               aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACTCTCGATTATTTATTTATATTTTTTATTAAT‑ATAAAAAGAAATTAAACACACAAAAACTCACCCAAAATGATGACTTTaaaa                                                                             >  1:6131158/1‑128 (MQ=255)
                                               aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaa                                                                             >  2:6698002/1‑128 (MQ=255)
                                               aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaa                                                                             <  1:4962136/128‑1 (MQ=255)
                                                aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                            <  1:7157039/128‑1 (MQ=255)
                                                aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                            <  1:8923902/128‑1 (MQ=255)
                                                aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                            <  2:8466012/128‑1 (MQ=255)
                                                 aataTAAGATACAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAat                                                                           <  2:8317980/125‑1 (MQ=255)
                                                       aGATAGAGCATAGCAGCAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAACCATTATGGTGAGTTTAAAAATAATACa                                                                     >  1:4424381/1‑128 (MQ=255)
                                                       aGATAGAGCATAGCAGAAGCTCTTAACAACTAAAATAAACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCa                                                                     <  2:2020473/128‑1 (MQ=255)
                                                        taTAGATCATAGCAGAAGCTCTTAACACCTAAACTACACTAGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaa                                                                    <  1:1681799/127‑1 (MQ=255)
                                                         aTAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaa                                                                   <  1:3558494/128‑1 (MQ=255)
                                                         aTAGAGCATAGAAGAAGCTCTTAATAAATAAACTACACTCGATTATTAAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaa                                                                   <  2:1866564/128‑1 (MQ=255)
                                                           agagCATAGCAGAATCTCTTAAAATCTAAACTACACTCGATTTTTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaaaa                                                                 <  2:9515501/128‑1 (MQ=255)
                                                           agagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaaaa                                                                 <  2:5637803/128‑1 (MQ=255)
                                                            gagCATTGCAGAAGCTCTTAAAAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAACCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                                <  1:1148299/128‑1 (MQ=255)
                                                            gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCCCCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                                >  2:9147204/1‑128 (MQ=255)
                                                            gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                                >  1:7435890/1‑128 (MQ=255)
                                                            gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                                >  1:960668/1‑128 (MQ=255)
                                                             agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAtt                                                               <  2:2499284/128‑1 (MQ=255)
                                                             agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAtt                                                               >  1:2014474/1‑128 (MQ=255)
                                                              gCATAGCAGAAGCTCTTAACAACTAAACTACACTCGAATATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAACCATTATGGTGAGTTTAAAAATTATTCAAAAAttt                                                              >  1:230012/1‑128 (MQ=255)
                                                                aTAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGa                                                            >  1:4144135/1‑128 (MQ=255)
                                                                 tatcaacaactattAACAAAAAAAATAAAATAGATTATTTAAATATAATTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                           <  2:1072794/116‑1 (MQ=255)
                                                                 tAGCAGAATCTCTTAACAACTAAACTAAACTAGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                           <  2:6523885/128‑1 (MQ=255)
                                                                   gCAGAAGCTCTTAACAACTAAACTACACTCAATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAatt                                                                          >  1:62677/1‑111 (MQ=255)
                                                                    cAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGattat                                                        <  1:9247441/128‑1 (MQ=255)
                                                                    cAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGattat                                                        <  2:6832056/128‑1 (MQ=255)
                                                                    cAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAATAAACACACAAAAACTCACCCATTATGGTGAGATTAAAAATTATTCAAAAAATTGattat                                                        >  2:7775034/1‑128 (MQ=255)
                                                                        atctctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTa                                                    <  1:9093711/126‑1 (MQ=255)
                                                                           tctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAAt                                                 <  1:4294319/128‑1 (MQ=255)
                                                                            ctTAACATCTATACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATc                                                <  2:3183047/128‑1 (MQ=255)
                                                                                  aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAattatt                                                                       <  1:7275844/99‑1 (MQ=255)
                                                                                  aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                          >  1:844362/1‑128 (MQ=255)
                                                                                  aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                          <  2:4502626/128‑1 (MQ=255)
                                                                                   actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGATTTTATAAATTATTAAAAAATTTGATTATTTTAAATCAATTGaa                                         >  1:4624539/1‑128 (MQ=255)
                                                                                   actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGaa                                         <  1:6983907/128‑1 (MQ=255)
                                                                                    ctaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAg                                        >  2:2835456/1‑128 (MQ=255)
                                                                                    ctaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAg                                        >  1:6816993/1‑128 (MQ=255)
                                                                                     taaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGc                                       >  1:8606459/1‑128 (MQ=255)
                                                                                     taaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGc                                       <  2:4345943/128‑1 (MQ=255)
                                                                                           acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGc                                 <  2:1546636/128‑1 (MQ=255)
                                                                                             acTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCtt                               >  1:3736194/1‑128 (MQ=255)
                                                                                             acTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAATATGGTGAGTTTAAAAATTATTCAAAAAGTTGATTATTTTAAATCAATTGAAGCTCCAGCtt                               >  2:6171606/1‑128 (MQ=255)
                                                                                              cTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTc                              >  1:8039661/1‑128 (MQ=255)
                                                                                                cGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCCTTATGGTGAGTTTAAAAATTATTCaaaaa                                                                 <  2:1672116/91‑1 (MQ=255)
                                                                                                 gATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCa                                                                                              >  2:9327825/1‑61 (MQ=255)
                                                                                                 gATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAAc                           >  2:3520734/1‑128 (MQ=255)
                                                                                                      tttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAtt                      <  2:301885/128‑1 (MQ=255)
                                                                                                       ttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                     <  1:7859983/128‑1 (MQ=255)
                                                                                                       ttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                     <  2:1220656/128‑1 (MQ=255)
                                                                                                       ttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                     <  1:1321382/128‑1 (MQ=255)
                                                                                                       ttAATTATATTTTTATTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                     <  1:1002850/128‑1 (MQ=255)
                                                                                                             atatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCttt               >  1:595222/1‑128 (MQ=255)
                                                                                                             atatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCttt               >  1:5716604/1‑128 (MQ=255)
                                                                                                             atatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCttt               >  2:7012542/1‑128 (MQ=255)
                                                                                                              tatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTTTGGTGAGTTAAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTACTTTAGATTTc              >  2:8822140/1‑128 (MQ=255)
                                                                                                              tatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTc              >  2:3863162/1‑128 (MQ=255)
                                                                                                                   ttttttaAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATttc         <  2:7211745/128‑1 (MQ=255)
                                                                                                                              |                                                                                                                            
TTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTTCAGCT  >  CP016816/484670‑484919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑