BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 87902	962 (0.610)	309 (0.180) +TTT	71/216	37.4	22.3%	intergenic (+29/‑831)	JCVSYN2_00345/JCVSYN2_00350	hypothetical protein/50S ribosomal protein L31
*	?	CP016816	87903 =	1117 (0.620)	309 (0.180) +TTT	71/216	37.4	22.3%	intergenic (+30/‑830)	JCVSYN2_00345/JCVSYN2_00350	hypothetical protein/50S ribosomal protein L31
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1519 total aligned reads displayed.

TGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTAG  >  CP016816/87776‑88030

 gtgtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTAAAATTGATAATAAAATTGATATTCATTGAATTTCAATTGAATATTTAGATTTTGAATAGCTGATATAAATGGATTATTA‑AAAAATA‑CA‑‑t‑t                                                                                                                                     >  2:68642/1‑128 (MQ=255)

   gtAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTGTTT‑AATAATC‑CA‑‑t‑t‑ta                                                                                                                                  <  2:1133570/128‑2 (MQ=255)

    tAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑ttt                                                                                                                                 >  2:60301/1‑128 (MQ=255)

    tAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGATGATTTAAATAGATTATTA‑AACAATA‑Ca‑‑t‑t‑att                                                                                                                                 >  1:1956189/1‑128 (MQ=255)

       cAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑AA‑‑t‑t‑tttt‑tt                                                                                                                             >  1:3606270/1‑128 (MQ=255)

        aaaaTTGGTTTATGTCTTGCAAGTAAATTTTAAATTTATAATAAAATTGATATTAATGGAAAGTCAAATTAATATTTATTTTTTTTATAGCTTATTTAAATGGCTTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑ttt                                                                                                                            <  1:2902412/128‑1 (MQ=255)

            gTGGTTTTTGAGTTTCAAGTAAAGTTTAAATTGATAATAAAATTGATTTTAATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTTATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑ttttttt                                                                                                                        <  1:2946208/128‑1 (MQ=255)

            gTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑ttttttt                                                                                                                        >  2:1293695/1‑128 (MQ=255)

              tgTTATTGATTTTCAATTAAATTTTAAATTTATAATAAAATTTATATTCATGGAAATTAAAATGAATATTTATATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑tttttttt‑‑t                                                                                                                    <  1:72384/127‑1 (MQ=255)

               ggtATTGAGTTTCAAGTAAAGTTCAAATTGATAATAAAATTGAAAATAATTGAAACTCAAATTAATATTTATATTTTTAAAAGCTGATTTAAATGTATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑tttttttt‑‑tt                                                                                                                   <  1:3153015/126‑2 (MQ=255)

                 tATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑TAT‑TTTT‑TTTTTTTT‑‑t‑aa                                                                                                                 >  1:2232495/1‑128 (MQ=255)

                  tttGAGTTGCAAGTAAAGTGCAAATTGATAATAAAATTTATATTAATGGAAAGTCAAATGAATATTTTTATTTTTAATAGATTATTTAAATTGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑t‑aata                                                                                                               <  1:3485072/127‑1 (MQ=255)

                  aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGTATTATTA‑AACAATC‑CA‑‑t‑t‑ttta‑tttttttt‑‑tttaa                                                                                                                >  2:2556447/1‑124 (MQ=255)

                  aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑tttttttt‑‑ttaat                                                                                                                >  1:3655902/1‑124 (MQ=255)

                  aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑tttttttt‑‑ttaaa                                                                                                                >  1:1208771/1‑124 (MQ=255)

                  aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑tttttttt‑‑ttaaa                                                                                                                >  2:947571/1‑124 (MQ=255)

                  aTTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑t‑tata                                                                                                               >  2:2251346/1‑128 (MQ=255)

                   ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGTATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑tttttttt‑‑ttaata                                                                                                               >  1:923902/1‑123 (MQ=255)

                   ttGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑t‑t‑tttt‑tttttttt‑‑tttaat                                                                                                               >  2:78754/1‑123 (MQ=255)

                    tttgTTGCAATTAAATTTCAAAATTTTAATAAAATTGATATTCAAGGAAACTCAAATGAAAATTTAGATTTTTTATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑t‑aataa                                                                                                              <  1:3751555/125‑1 (MQ=255)

                    tGAGTTGCAAGTAAAGTTCAAATTTATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGAATATGAATAGATGATATAAAAGGATTATAA‑AACAATC‑CA‑‑t‑t‑tttt‑atttttttataaaaa                                                                                                                >  2:1814491/1‑121 (MQ=255)

                    tGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATaaa                                                                                                             >  1:1155274/1‑128 (MQ=255)

                      aGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATaaaa                                                                                                            >  2:3061360/1‑128 (MQ=255)

                         tGCAATTTAAGTTAAAATGGATAATAAAATTGCAATTAATGGAAAGTCAAATGAATATTTTGATTTTGAATAGCTGTTTTTAATTGATTATTA‑AACAATA‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGAc                                                                                                        <  2:2935279/128‑1 (MQ=255)

                         tGCAAGTAAAGTTCAAATTGTTAATAAAATTTATATTCATTGAAAGTAAAATTAATATTTATTTTTTGAATATCTGATTTAAATGGTTTATTA‑AACAATC‑CATTT‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAg                                                                                                          <  1:2392077/128‑1 (MQ=255)

                            aaGTAAAGTTTAAATTTATATTAAAATTTATATTCATGTAAATTCAAATTAATATTTATATTTTGAATAGCTGATTTAAATGGATTATTA‑AAAAAT‑‑CA‑‑A‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTcac                                                                                                    <  2:1191248/128‑1 (MQ=255)

                             attAAATTTAAAATTTAAAATAAAATTTATATTCATTTAAATTAAAATTAATATTTATATTTTTAATACCTGTTTTAAATGGATTATTA‑AAAAATC‑CATTT‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTc                                                                                                      <  1:3699144/126‑1 (MQ=255)

                             aGTTAAGTTCAAATAGAAAATAAAATTGATTTTAAAGGAAAGTCAAATGAATATTTAGATTTTGAAAAGCTGATTTAAATGGATTATTA‑AACAAAC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTca                                                                                                     <  1:3832688/128‑1 (MQ=255)

                              gTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATaaaaaaaaaaaa                                                                                                    >  2:1528731/1‑121 (MQ=255)

                               tAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATCACT‑‑T‑TATTTT‑TTTTATTT‑‑A‑AATaaaaaacacaaa                                                                                                    >  1:799717/1‑121 (MQ=255)

                                taagtgaaaaTAGATAAAAAAATTGATTTTCATGGCAATGCAAATGAATATTTAGATTTTGATTAGCGGATTTAAATGGTTTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTcactt                                                                                                  <  2:3680340/121‑3 (MQ=255)

                                  aGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAATACTAACaaaa                                                                                                >  1:626394/1‑128 (MQ=255)

                                   tttaaaaTTTATAATAAAATTGATATTCATTGAAAGTCAAATTAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AAAAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAg                                                                                               <  2:2049728/124‑1 (MQ=255)

                                      aaaaTTTATAATAAAATTGATATTAATTGAAATTAAAATTAATATTTATATTTTTAATAGCAGATTTAAATTGATTATTA‑AAAAATA‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGa                                                                                            <  1:1563175/127‑1 (MQ=255)

                                       aaaTTTATAATAAAATTTATATTAATGGTAAGTAAATTTATTATTTTTATTTTTAATTTCTGTTTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAg                                                                                           <  2:2628565/128‑1 (MQ=255)

                                        aaTTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAATAATAACATAAGTGAGta                                                                                         >  1:1267460/1‑127 (MQ=255)

                                        aaTTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGAcacaaaatatttagtc                                                                                         >  2:2685245/1‑116 (MQ=255)

                                         aTTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑ATTAAAAAGACACACATAAgagatga                                                                                         >  2:1064395/1‑125 (MQ=255)

                                            gattaaaaaaTTGATAATCTTGGTAAGTAAAATGAATATTTATTTTTTGAATAGCTGATTTAAATGGATTTTTA‑AACAATA‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAAt                                                                                      <  2:3826326/122‑1 (MQ=255)

                                            gATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑AAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAAAATAAAATAAATAAGTAAAt                                                                                      >  1:2147723/1‑128 (MQ=255)

                                             ataataAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CATTT‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTAACATAAGTGAGTCatt                                                                                      >  2:872896/1‑126 (MQ=255)

                                                  aaaaTTTATATTAATTGAAAGACAAATTAATATTTATATTTTTATTATCTGATTTAAATTTATTATTA‑AACAATC‑AAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGat                                                                                <  1:1063926/128‑1 (MQ=255)

                                                  aaaaTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATATCTGAATTAAATGGTTTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAAACTAAAATAAGTTATTCAATTggtat                                                                                >  2:2099560/1‑124 (MQ=255)

                                                  aaaaTTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAAACTCACAAAAGTAATTAAAttactat                                                                                >  1:3549981/1‑123 (MQ=255)

                                                       tGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAATACTCAAATAATTGATTCAATTTATATTATtta                                                                          >  1:986921/1‑128 (MQ=255)

                                                         atatTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAATACTCAAATAAGTGAGTAAATTGCGATTATttaat                                                                        >  2:2339062/1‑128 (MQ=255)

                                                          tatttattGTAATTCAAATTTATATTTATATTTTTTATATATTTTTTAAATTGTTTATTA‑AAAAATA‑AATTT‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaa                                                                         <  2:3883026/128‑1 (MQ=255)

                                                           atTCATGGAAAGTAAATTTAATATTTTTTTTTTTAATATCTTTTTTAATTCTATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaatta                                                                      <  1:265748/128‑1 (MQ=255)

                                                            ttcattgtatttCAAATGAATAATTAGATTTTGAATATCTGATTTAAATGGATTATTA‑AAAAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattat                                                                     <  2:1743618/117‑1 (MQ=255)

                                                              aaTGGATAGGAAAATGAATATTTAGATTTTGAATAGCTGATTTAAAAGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattatt                                                                    <  2:3473870/127‑1 (MQ=255)

                                                               aTGGATAGTTAAATTATTATTTAGTTTTTGAATAGCTGATTTAAATTGATTTTTATAATATTC‑TT‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATttaattatta                                                                   <  1:2579514/128‑1 (MQ=255)

                                                                tGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAAAAACAAAAAATTTATTAAATTGCGTTTattaattaattat                                                                  >  2:3343372/1‑127 (MQ=255)

                                                                     aGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTTTAT‑AAAAAAAAGACTCAAATAAATAATACAAATCCGATTTTTtaattataaattat                                                              >  1:2027963/1‑128 (MQ=255)

                                                                          aaTGAATATTTAGATTTTGAATAGCTGATTTAAATGTATTATTA‑AACAATA‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAATACAAAAAAAATTTATTCAATGGGCATAATTTATTAATTAATAATTCattaa                                                       >  1:2508388/1‑126 (MQ=255)

                                                                             gAATATTTATCTTTTGAATAGCTTATTTAAATGGATTTTTA‑AAAAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTtgatg                                                     <  1:3421147/128‑1 (MQ=255)

                                                                              aaTATTTAGATTTTTAATAGCTTCTTTAAATGTATTATTA‑AAAAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑TAAATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTtgatga                                                    <  2:3401691/128‑1 (MQ=255)

                                                                              aaTATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CATTT‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAAAATAAAATAATTAATTAAATTGAAATTATTTAATTATTAATTATTATTttatt                                                     >  1:1466899/1‑127 (MQ=255)

                                                                               ataaTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑‑‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACt                                                 <  1:280529/128‑1 (MQ=255)

                                                                                tatTTATCTTTTGAATATTTGATTTAAATGGTTTTTTA‑AAAAATT‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAAc                                                  <  2:1365574/128‑1 (MQ=255)

                                                                                tatTTATATTTTTTATATTTTATTTTAATTGTTTTTTA‑AAAAATA‑AA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACt                                                 <  2:2872143/128‑1 (MQ=255)

                                                                                 ttttAGTTTTTTTATAGCTGATTTAAATTGTTTATTA‑AACAATA‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACt                                                 <  2:1593379/127‑1 (MQ=255)

                                                                                 atTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGAATAAAATAATTTAGTAAATTGCGATTATTAAATTATTAATTATTATttaattaaat                                                 >  1:3879668/1‑126 (MQ=255)

                                                                                 atTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑‑‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                               <  1:1380402/128‑1 (MQ=255)

                                                                                   ttATATTTTTAATATATTATTTAAATTGATTATTA‑AATAATC‑AATTT‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTa                                                <  2:3004590/128‑1 (MQ=255)

                                                                                   taaGATTTTTAATATTTTATATAAATTTCTTTTTA‑AACAATC‑AAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTAACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAt                                               <  2:2478305/126‑1 (MQ=255)

                                                                                     atttttttcatatCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTAttt                                             <  2:353971/119‑1 (MQ=255)

                                                                                        ttttGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACAAAATTTAGTAAATTGAGATTATTTAATTATTAATTATTATTTGATGaaattattaac                                          >  1:1627213/1‑119 (MQ=255)

                                                                                           tGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAAAATCACAAAATTGATTAAATATGAATAATTTAATTATTAATTATACTATGATGAAATATTTACattt                                       >  1:456054/1‑128 (MQ=255)

                                                                                             tatatCTTATTTAAATTTTTTTATA‑AAAAATA‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttctt                                    <  2:1676241/127‑1 (MQ=255)

                                                                                             taTAGTTGATTTAAATGGATTATTA‑AACAATA‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttctt                                    <  1:1704903/127‑1 (MQ=255)

                                                                                              aTAGCTTTTTTAAATTGATTATTA‑AACAATT‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACctttctt                                    <  2:440168/128‑1 (MQ=255)

                                                                                                aGCTGATTTAAATGGATTATTA‑AACAATA‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAg                                 <  1:3277370/128‑1 (MQ=255)

                                                                                                 gCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCAAATATGTGAGTCAATTGCTATTATTTAATTATTAATTATTATTTGATTAAATATTTACATTTATTTAgt                                >  1:3052003/1‑127 (MQ=255)

                                                                                                 gCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑‑‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAATAATCAAATAAGTGATTAAATTGCTATTATTTAATTATTAATTATTATTTTATTAAAAATTTACCTATATTTAGGt                               >  1:2094292/1‑128 (MQ=255)

                                                                                                 actatattAAATTGATTATTA‑AACAATA‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAg                                 <  1:1898316/122‑1 (MQ=255)

                                                                                                  cTGATTTAAATTGATTATTA‑AAAAATA‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGt                               <  1:856256/128‑1 (MQ=255)

                                                                                                   tGATTTAAATGGATTATTA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAAAATCAAAAAATTTAGAAAATTGCGATTATTTAATTATTAATTATTATTTAATTAAATATTAAAATTTATTTATGt                               >  2:3124994/1‑128 (MQ=255)

                                                                                                   agatttactagtattattA‑AACAATA‑CA‑‑T‑T‑TTTTATTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGt                               <  1:1003817/116‑1 (MQ=255)

                                                                                                    gATTTAAATGGATTATAA‑AAAAATA‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTa                              <  2:3281356/128‑1 (MQ=255)

                                                                                                      aaaaaaTGGATTGTTT‑AATAATC‑CATTT‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCAAATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTATTTTATGAACTATTTAAATTTATTTAGTTaa                             >  2:51972/4‑128 (MQ=255)

                                                                                                         aaaTTGATTATTA‑AACAATA‑GAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACtaa                         <  1:1337401/128‑1 (MQ=255)

                                                                                                            tGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACtaattaa                     <  2:281472/128‑1 (MQ=255)

                                                                                                               attattA‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AAAAAAAAAACTAAAATAATTGAGTAAATTGTTATTATATAATTATTAATTAATATTTGATTAAATATTTACATTTCTTTATTTAACTaaataatt                   >  2:1907602/1‑128 (MQ=255)

                                                                                                               attattA‑AACAATC‑CA‑‑‑‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTAAATTTCTTTAGGTAAATAATTAATTAc                 >  2:2391650/1‑128 (MQ=255)

                                                                                                                ttatta‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAATACTCAAATAAGTTAGTCAATTGCGATTATTTATTTATTAATTTTTATTTGTTCTAATATTTACATTTATTTATTTAAAtaattaataa                  >  2:3756782/1‑126 (MQ=255)

                                                                                                                 tatta‑AACAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATATGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATTAACTATTTACATTTCTTTAGGTAAATAATTAATTAc                 >  1:1767805/1‑128 (MQ=255)

                                                                                                                 tatta‑AAAAATC‑TAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTTGGTAACTAATTAATTAc                 <  2:3200609/128‑1 (MQ=255)

                                                                                                                     ttaataaTC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAAATAATTAATTACCTaa             >  1:3218706/6‑128 (MQ=255)

                                                                                                                     a‑aaCAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGTTTCAATTGCGATTATTTAATTATTAATTATTATTTGATGAACTATTTAACTTTCTTTAGGTAACTATTTAATTACCTaa             >  1:2745450/1‑128 (MQ=255)

                                                                                                                      taataaTC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTATTTATTAATTATTATTTGATTAACTATTTACCTTTATTTAGGTAAATAATTAATTACATaa             >  1:3338235/5‑128 (MQ=255)

                                                                                                                       taataaatagatt‑t‑tttt‑tttttttt‑‑t‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTa              <  2:144852/116‑1 (MQ=255)

                                                                                                                         cAATC‑CAT‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTAACATAAGTGAGTAAATTGAGATTATTTAATTATTAATTATTATTTTATTAACTATTTAACTTTCTTTAGTTAACTAATTAATTACCTAatat          >  1:285618/1‑128 (MQ=255)

                                                                                                                         ataatccattt‑t‑tttt‑tttttttt‑‑t‑AATAAAAAGACACAAATAAGTGAGTCAATTGCGATTATTTATTTATTAATTTTTATTTTATTAACTATTTACATTTATTTAGGTAAATAATTAATTACATAat            >  1:525841/11‑128 (MQ=255)

                                                                                                                         ataatccattt‑t‑tttt‑tttttttt‑‑t‑AATAAAAAAACACCAAAAAGTGGTACATTTGCGATTATTTATTTATAAATTATAATTTGTTGAAATATTTACCTTTATTTTGGTAAATAATTAATAACATAat            >  2:2181845/11‑128 (MQ=255)

                                                                                                                         aaatatacatt‑t‑tttt‑tttttttt‑‑t‑AATAAAAAGAATCACATAAGTGATTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAat            <  2:1985449/118‑1 (MQ=255)

                                                                                                                         aaatataa‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAatat          <  1:2300603/121‑1 (MQ=255)

                                                                                                                            aaataatt‑t‑tttt‑tttttttt‑‑t‑AATAAAAAGACTCTCATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAAtatt         <  1:244831/121‑1 (MQ=255)

                                                                                                                             c‑cA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTAttt     <  1:2998056/128‑1 (MQ=255)

                                                                                                                                catt‑t‑tttt‑tttttttt‑‑t‑AATAAAAAGACTCACATAAGTGAGGCATTTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACATTTCTTTAGGTAACTAATTAATTACCTAATATTAttt     >  1:1850417/4‑128 (MQ=255)

                                                                                                                                   t‑t‑tttt‑tttttttt‑‑t‑AATAAAAAGACTCAGATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTAg  <  2:3608875/128‑1 (MQ=255)

TGTGTAACAAAAGTGGTTATTGAGTTGCAAGTAAAGTTCAAATTGATAATAAAATTGATATTCATGGAAAGTCAAATGAATATTTAGATTTTGAATAGCTGATTTAAATGGATTATTA‑AACAATC‑CA‑‑T‑T‑TTTT‑TTTTTTTT‑‑T‑AATAAAAAGACTCACATAAGTGAGTCAATTGCGATTATTTAATTATTAATTATTCTTTGATGAACTATTTACCTTTCTTTAGGTAACTAATTAATTACCTAATATTATTTTAG  >  CP016816/87776‑88030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.