Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT37.5% 858.6 / 199.5 675intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (122/293);  new base T (248/1);  total (380/295)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 715 total aligned reads displayed.

AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203787‑204039
                                                                                                                                      |                                                                                                                                  
    ataaaaatTTTTTATTTAAAGTCATTTTTAAAAAATCATATTTTATATTATTTTTATTATACTTATAAAAATTACAACGCTTTAAAATTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTaaaa                                                                                                                               <  1:752914/128‑1 (MQ=255)
     taaaaatTTTTCATTTAAAGCAATTTTTAAAAAAGCCTTTGTTATAGGGTTTTTTTTTTACTTATCAACATTACAACGCTTTCAAAGTTTA‑TTTTTTAGG‑G‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTaaaaa                                                                                                                              <  2:1321046/128‑1 (MQ=255)
        aatattttAATTAAAAGAAATTTGTAAAAAATGCTATTTTATAGGATTTTTATTATACTTATAAAAATTAAAACGCTTTCAAAGTGTA‑TTTTTTATG‑CT‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑aa                                                                                                                          <  1:493639/124‑1 (MQ=255)
        aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑aaa                                                                                                                         >  1:1019902/1‑128 (MQ=255)
        aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑aaa                                                                                                                         >  2:1048112/1‑128 (MQ=255)
          atTTTTCATTTAAATCAAATTTTAAAAAAGGCTATGTTGTTGGGTTTTTATTTATCTTATCAACATTTCAACGCTTTCAAAGTTTA‑ATTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAg                                                                                                                       <  1:3314039/128‑1 (MQ=255)
          atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAATTGTA‑TTTTTTAGT‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAaaaaa‑aaatt                                                                                                                       >  2:703891/1‑126 (MQ=255)
          atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTTATTTTTTTTTTTGTaaaaaa‑aaaa                                                                                                                        >  1:97454/1‑128 (MQ=255)
           ttttttATTTAATGACATTTTTAAAAAAGCTTTTTTTATAGG‑TTTTTATTATACTTATCAACATTTCAACGCTTTCAAAGTGTA‑TTTTTTTGG‑G‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑a                                                                                                                    <  2:3492366/128‑1 (MQ=255)
           ttttttAATTAAATCATTTTGTTAAAAACACTATGTTCTAGGCTTTTTTTTATTATTATAAAAATTAAAAATCTTTAAAAGTTTA‑TTTTATATG‑CT‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAg                                                                                                                       <  1:2707696/128‑1 (MQ=255)
           tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTTTTAAATT‑aaaaat                                                                                                                      >  2:2470003/1‑126 (MQ=255)
           tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑GTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTTAaaaa‑aaaaat                                                                                                                      >  2:2503802/1‑126 (MQ=255)
              ttCAGTTAAAGCCATTTTTAAAAAATCATATGTTATTTGCTTTTTATTATAATTATAAACATTAAAACCCTTTCAAATTGTT‑TTTTTTAGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑a                                                                                                                    <  1:1354370/128‑1 (MQ=255)
                aaTTTAAATCAATTTTTAAAAAATCTTATTTTTTATGATTTTTATTATAATTATAAACATTAAAACGCTTTAAAATTTTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGa                                                                                                                 <  1:1835623/127‑1 (MQ=255)
                    tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGAttt                                                                                                              >  1:2948319/1‑128 (MQ=255)
                     aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTgg                                                                                                            >  1:3127757/1‑128 (MQ=255)
                      aatcaaTTTGTAAAAAATTCTATTTTTTTTGTTTTTTTTTATAATTATCAAAATTACAACGCATTCAAATTTTT‑TTTTTTTGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTgg                                                                                                            <  1:2063992/123‑1 (MQ=255)
                       aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑ATTAtttttat                                                                                                          >  2:2038584/1‑124 (MQ=255)
                          cATTTTTTAAAAAGCCAAATTTTTTTGCTTTTTTTTATTCATATAAACTTTTAAACCCTTTCAATTTGTA‑TTTTTTTGG‑CCTTTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCa                                                                                                        <  2:3214366/128‑1 (MQ=255)
                            tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAATT‑AAAATT‑TATATTTGTTTCAAca                                                                                                     >  1:1947633/1‑127 (MQ=255)
                            tatGTAAAAAATCATATTTTATAGTTTTTTTATTATAATTATAAAAATTAAAAATCTTTAAAAGTTTATTTTTTTTGA‑T‑‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAAcc                                                                                                     <  1:1665601/126‑1 (MQ=255)
                             ttttAAAAAAGCCTTTGTTTTTGTGTTTTTATTATAATTATAAACATTAAAACTGTTTTAAAGTGTT‑TTTTTTTGG‑T‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAAcc                                                                                                     <  2:3289409/125‑1 (MQ=255)
                                taaaaaccacaaTGTTATATGCTTTTTATTTTACTTATTAAAATTTCAACGCTTTAAAATTGTT‑TTTTTTATG‑CT‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCaaaa                                                                                                 <  2:2625495/117‑1 (MQ=255)
                                tAAAAAATGCTATTTTTTTTGTTTTTTATTATAATTATAAAAATTTAAAATCTTTAAAATTTTA‑TTTTTTAGG‑G‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCaaaa                                                                                                 <  1:345695/128‑1 (MQ=255)
                                tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AAGATTTGTATAAACAaaaaa                                                                                                >  2:1544699/1‑127 (MQ=255)
                                tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTGTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑TATATTTTGTTCAACCaaaa                                                                                                 >  1:3766502/1‑128 (MQ=255)
                                 aaaaaattatttGTTTTATGGTTTTTTTTTTAATTTTAAAAATTTTAACGATTTTAATGTGTATTTTTTTTGGTT‑‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCaaaa                                                                                                 <  2:3634374/117‑1 (MQ=255)
                                 aaaaaaGACATTGTTCTTTGCTTTTTTTTATAATTATCAAAATTACAACTCTTTAAAAGTTTA‑TTTTTTTGG‑CT‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAAc                                                                                                <  1:3644956/128‑1 (MQ=255)
                                  taaaaTCCTATTTTATATGCTTTTTTTTATAATTATAAAAAATACAACTCTTTAAAATTGTA‑TTTTTTATG‑C‑‑TTG‑‑‑‑‑TTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACtat                                                                                             <  1:667577/127‑1 (MQ=255)
                                  aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTGTATCAACCAAAACt                                                                                               >  1:1400259/1‑128 (MQ=255)
                                   aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGTTTAAACCaaaaat                                                                                               >  2:1403860/1‑126 (MQ=255)
                                      aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑AAGATTTTGATAAACAAAAAatatat                                                                                           >  1:387554/1‑128 (MQ=255)
                                       gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATc                                                                                          >  1:1896612/1‑128 (MQ=255)
                                         cTATTTTATATGATTTTTATTATAATTATTAAAATTAAAAATCTTTAAAATTGTA‑TTTTTTATG‑C‑‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCaaa                                                                                       <  1:3588098/128‑1 (MQ=255)
                                         cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAATT‑AATATTTGGATCAACCaaatatttttaaa                                                                                        >  1:321335/1‑118 (MQ=255)
                                           agaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑A‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAAT‑AAGATTTTGATCAACAAAAAATTTataaataa                                                                                     >  1:2605188/7‑128 (MQ=255)
                                            tGTTATATGCTTTTTATTTAAATTTTAAAATTTAAAAAGTTTTAAAAGTTTT‑TTTTTTAGT‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCaaaaa                                                                                     <  1:3485031/128‑1 (MQ=255)
                                             gTTCTAGGCTTTCTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTTT‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑ATTATTTGGATAAAACaaaaattattcaaaa                                                                                      >  1:1274773/1‑117 (MQ=255)
                                              ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAATTT‑AATATTTGGATCAACAAAAACTATATAaaaaaa                                                                                    >  1:1320382/1‑128 (MQ=255)
                                                cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTTTTTTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AATTTTTTGAGAAACAAAAAATATTTAaaaaaa                                                                                    >  2:3388995/1‑128 (MQ=255)
                                                cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AAATTTTGGATAAACCAAAACAATAAAAAAAAAAtt                                                                                 >  2:3114175/1‑128 (MQ=255)
                                                 tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑AAAATTTGTATCAACCAAAAAAATAAAAAAAAAATTaa                                                                               >  2:3244949/1‑128 (MQ=255)
                                                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑ATTATTTGGAAAAACCAAAAAATTATAAAAAAAATTtaa                                                                              >  1:2223918/1‑128 (MQ=255)
                                                   ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAAT‑AAAATTTTTATAAACAAAAAATTTATAAAAAAAATTaaa                                                                              >  1:1601188/1‑128 (MQ=255)
                                                       ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAA‑AAAATA‑AATGTTTGGAAAAACAAAAAAAAATAAAAAAAAATTaaaaaaa                                                                          >  2:1905570/1‑128 (MQ=255)
                                                        ttttttATATTTTTTAATATTAAAACTATTTAAATTTGTA‑TTTTTTAGG‑T‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaaa                                                                         <  1:895941/128‑1 (MQ=255)
                                                        tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AAAAATTTGAAAAAAAAAAAATAAATAAAAAAAATTaaaaaaaa                                                                         >  2:3581613/1‑128 (MQ=255)
                                                                aattaataaaaTTAAAAAGCTTTTAAATGTTT‑TTTTTTATG‑A‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta‑gtttag                                                                <  2:399298/118‑1 (MQ=255)
                                                                aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAATT‑AATATTTTTATCAACCAAAACTATAAAAATAAAATTAAAAAAAAta‑attttg                                                                >  2:3418014/1‑126 (MQ=255)
                                                                aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTGGATAAACAAAAAATTTTTAAAAAAATTTAAAAAAAAtt‑ttttatt                                                               >  1:3686554/1‑126 (MQ=255)
                                                                  ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAAT‑AAAATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAAta‑tttaattt                                                              >  1:2303228/1‑123 (MQ=255)
                                                                    ataaaaaTTACAAAGCTTTAAAAGTGTA‑TTTTTTTTG‑CT‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGa                                                            <  2:913944/122‑1 (MQ=255)
                                                                    aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAA‑AAAATT‑AAAATTTTGAAAAACCAAAACATTATAAAAAAAATTAAAAAAAAaa‑ttttattttt                                                            >  2:3343795/1‑126 (MQ=255)
                                                                          aTTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑AATATTTTTATAAACCAAAAAAATATAAAAAAAATTAAAAAAAATA‑TTTTATTTTAGttta                                                       >  1:1758167/1‑127 (MQ=255)
                                                                          aTTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTTTAAAAAA‑AAAATT‑AATATTTGGATAAACCAAAAATATTAAAAAAAAATTAAAAAAAAAa‑ttttattttatttta                                                       >  1:121679/1‑127 (MQ=255)
                                                                            tACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTTAAAAT‑AAAAGT‑AATATTTTGATAAACCAAAACTTTTTAAAAAAAATTTAAAAAAATA‑TTTTAGTTTAGTTTCaaa                                                    >  1:2907799/1‑128 (MQ=255)
                                                                             acaactctagaaaaGTGTA‑TTTTTTATG‑A‑‑GTGTT‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCaaa                                                    <  2:3147155/117‑1 (MQ=255)
                                                                              cAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAATT‑AAGTTTTGGAAAAACCAAAAAATTATCAAAAAAATTAAAAAAAATA‑TTTTAGTTGAGTTTCAAATCt                                                 >  1:2810268/1‑128 (MQ=255)
                                                                                aCGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAATA‑AATATTTGGAACCAACAAAACATTATCAAAAAAAATAAAAAAAAAA‑CTTATTTTGAGTTTCAAATcaca                                               >  1:3246647/1‑125 (MQ=255)
                                                                                   cTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGTTT‑TTTTT‑TTTTTTTTTTTTTAAAAAA‑AAAAGT‑AAAATTTTGTTAAACCAAAAAAAAAAAAAAAAAATTAAAAAAAAAA‑TTTTATTTGTGTTTaaaaattgc                                               >  2:303798/1‑123 (MQ=255)
                                                                                   cTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑AAGATTTGTAAAAACAAAAAATATTAAAAAAAAATAAAAAAAAATA‑ATTTATTTAAGTTTCAAAACTGAat                                             >  1:8577/1‑128 (MQ=255)
                                                                                    tttaatattgtT‑TTTTTTATG‑T‑‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCatat                                           <  1:431043/120‑1 (MQ=255)
                                                                                    tttCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAA‑AAAAATAAAAAATTGGAACAACAAAAAAAAT‑TAAAAAAAATTAAAAAAAAAATTTTTAGTTGATTTTaaaaagtgctaa                                            >  2:2904352/1‑120 (MQ=255)
                                                                                     ttCAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑AATATTTTGATCAACCAAAAATAAAAAAAAAAAATTTAAAAAAATA‑TTTTATTTGTTTTTAAAAACTGCatat                                           >  1:3353176/1‑128 (MQ=255)
                                                                                       cAAAGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAAGT‑AAAATTTGGATCAACCAAAACTAAAAAAAAAAAATAAAAAAAAATT‑ATTTATTTTAGTTTaaaaattaatataaa                                         >  2:1253580/1‑117 (MQ=255)
                                                                                       cAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAATT‑AAGATTTGGATCAACCAAAACTATTTAAAAAAAATTAAAAAAATAT‑TTTTATTTGAGTTTCAAATATTCattatta                                        >  1:2007214/1‑123 (MQ=255)
                                                                                        aaaGTGTA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAATT‑AATATTTGGTAAAAACAAAAATTTTAAAAAAAAATTAAAAATAATA‑TTTAAGTTGATTTAAAAAAATTCatataaa                                        >  2:367485/1‑126 (MQ=255)
                                                                                            tgtA‑TTTTTTAGG‑C‑‑TTGT‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAA‑AAAAGT‑AATTTTTTGTTAAACCAAAAATATATAAAAAAAATTAAAAAAAAAT‑TTTTTTTTGATTTTAAAATATGAAAAAATATTAc                                    >  1:1105586/1‑128 (MQ=255)
                                                                                             gtA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AAGATTTTGAAAAAACAAAAATATAAAAAAAAAATTAAAAAAAATA‑ATTTATTTTAGTTTAAAATATTCatataaattaaaa                                  >  2:54932/1‑120 (MQ=255)
                                                                                              tA‑TTTTTTATG‑C‑‑TTG‑‑‑‑TTTTT‑TTATTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACaaa                                 <  1:2995807/128‑1 (MQ=255)
                                                                                                tttttttAGT‑CT‑TTT‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACaaa                                 <  2:3368668/127‑1 (MQ=255)
                                                                                                 ttttttAGG‑C‑‑TTGTT‑‑TTTTT‑TTTTTTTTTTTTTAAAAAA‑AAAATT‑AATATTTGGTTCAACAAAAAATTTATAAAAAAAATTAAAAAAAATA‑GTTTATTTTAGTTTAAAAACTGAAAATAAATTAaaaa                                 >  1:2747387/1‑128 (MQ=255)
                                                                                                   ttttAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTTTAAAAAT‑AAAATT‑AATATTTTGAAAAACCAAAAATATATAAAAAAAATTAAAAAAAATA‑GTTTATTTGATTTTAAAATAAGAATATATTTTAAAAAgtat                             >  2:168947/1‑125 (MQ=255)
                                                                                                        gg‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTT‑TAAAAAA‑AAAATT‑AAGATTTTGATCAACCAAAACTAAATAAAAAAAATTAAAAAAAATT‑TTTTTTTTTATTTTAAAATGTGAATATATAGAAAAAATTAATTTaat                       >  1:2409774/1‑126 (MQ=255)
                                                                                                             ttttttttttttt‑tttttttttttttAAATAT‑AAAAGT‑AAGATTTGGATAAAAAAAAAATATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:1515170/120‑1 (MQ=255)
                                                                                                             ttttttttttttt‑tttttttttttGTAAAAAT‑AAAAGT‑ATGATTTGGATCAACCAAAACTATATCATAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:819820/120‑1 (MQ=255)
                                                                                                               ttttttttttt‑tttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGTATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:3386193/122‑1 (MQ=255)
                                                                                                               gtttttttttt‑tttttttttttGTTAAAAT‑TAAAGT‑AAGATTTGGATTAACGAAAAATATATCAAAAAAATTAATATATATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:196765/122‑1 (MQ=255)
                                                                                                               gtttttttttt‑tttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:2511510/122‑1 (MQ=255)
                                                                                                                  gttttttt‑tttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATA‑GTTTATTTTAGTTTAAAATATGCATATATTGTAAAAATGTATTtattat                     >  1:580703/4‑128 (MQ=255)
                                                                                                                      tttt‑ttttttttttttTAAAAAT‑AAAAGT‑AATATTTGTATAAAAAAATATTATATAAAAAAAATTAAAAAAAATA‑TTTTAGTTTAGTTTAAAATATGAATATATAGTACAAATGAATTTATGATAGaa                 <  2:2292230/128‑1 (MQ=255)
                                                                                                                      tttt‑tttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:3543861/128‑1 (MQ=255)
                                                                                                                       ttt‑tttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  2:3785920/128‑1 (MQ=255)
                                                                                                                       ttt‑tttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACAAAAACTATATAAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  2:3171585/128‑1 (MQ=255)
                                                                                                                         t‑tttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:1141372/128‑1 (MQ=255)
                                                                                                                           ttttttttttttTAAAAAT‑AAATTT‑AAGATTTGGATAAACAAAAACTATATAAAAAAAATT‑AAAAAAATA‑GTTTAGTTGAGTTTAAAATATGAATATATAGTACAAAGTAATTTATGATATaaaaaaa            <  2:640152/128‑1 (MQ=255)
                                                                                                                            ttttttttttGTAATAAT‑AAAAGT‑TAGATTTGGATTTATTAATACTATATTAAAAAAATTAAAAAATATA‑GTTTAGTT‑AGTTTCATATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt           <  2:2841069/128‑1 (MQ=255)
                                                                                                                            ttttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa            <  1:3106289/128‑1 (MQ=255)
                                                                                                                             ttttttttttTAATAAT‑AAAAGT‑TAGATTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt           <  2:826123/128‑1 (MQ=255)
                                                                                                                              ttttttttttAAAAAT‑AAAATT‑AATTTTTGGATAAACCAAAAAAATAAAAAAAAAATTAAAAAAAATA‑TTTTTTTTTAGTTTAAAATATGAATATAAATTAAAAATAAAATTTTTATTTAAAAAAATg          >  1:3836078/1‑128 (MQ=255)
                                                                                                                              ttttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  2:2960249/128‑1 (MQ=255)
                                                                                                                                ttttttttAAAAAA‑AAAAGT‑AAGATTTTGATCAACCAAAACTATATCAAAAAAAATAAAAATAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa        <  2:3549397/128‑1 (MQ=255)
                                                                                                                                ttttttGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa        <  1:3064307/128‑1 (MQ=255)
                                                                                                                                 tttttGTAATAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt       <  1:3153668/128‑1 (MQ=255)
                                                                                                                                 tttttGTAAAAAT‑AAAAGT‑AAGATTTTGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt       <  2:478865/128‑1 (MQ=255)
                                                                                                                                   tttGTTAAAATAAAAAGT‑ATGATTTGGAGAAACAAAAATATTTTAAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  2:3722563/128‑1 (MQ=255)
                                                                                                                                   tttGTAAAAAT‑AAAAGT‑AAGATTTGTATCAACAAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATTGATTa     <  1:2882976/128‑1 (MQ=255)
                                                                                                                                    ttGTAAAAAT‑AAAAGT‑AAGATTTTTATCAAACAAAAATATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGATTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  1:2164603/128‑2 (MQ=255)
                                                                                                                                      gTAAATAT‑TAAAGT‑TTTATTTTGATAAATAAAAATTATATAAAAAATATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca  <  2:1790769/128‑4 (MQ=255)
                                                                                                                                      gTAAATAT‑AAATGT‑AAGATTTGTATTATTATAAAATATATAAAAAAAATTATAATAAATA‑GTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt  <  2:2218354/128‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                  
AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGG‑C‑‑TTG‑‑‑‑TTTTT‑TTTTTTTTTTTGTAAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203787‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑