Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4880TA32.6% 285.3 / 188.9 440intergenic (+266/‑409)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (117/135);  new base A (36/86);  total (173/267)
Fisher's exact test for biased strand distribution p-value = 2.38e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01

Only 100 of 492 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTAT  >  CP016816/202369‑202615
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aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTAGTATATATT‑CACAAAT‑AAAAAAAAA‑ACAAAACCCTAaaaaa‑‑aaaaa                                                                                                                          >  1:4512229/1‑126 (MQ=255)
  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTATTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCCC‑‑ttaaa‑‑aatt‑aaaaa                                                                                                                     >  2:5913687/1‑128 (MQ=255)
   aataTACTTAATGTTAAATAAAATAACATAAAATAAAAAATTTTTTA‑AATTTTTATCCCTGGTTTAT‑TTTTTTTTATTTTTTTATTTT‑CACAAAT‑‑AAAAAAAA‑ACAAACCCC‑‑TTAAA‑‑AAAT‑aaaaaaa                                                                                                                   <  1:2333252/128‑1 (MQ=255)
    ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑‑AAAAAAAA‑ACAAAACC‑‑ATTAAA‑‑AATT‑aaaaaaaa                                                                                                                  >  1:3293296/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAAAACC‑‑ATTAAA‑‑AATT‑aaaaaaaa                                                                                                                  >  1:5426165/1‑128 (MQ=255)
       gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCAC‑‑TTAAA‑‑AATT‑aaaaaaaaaa                                                                                                                >  1:6224467/1‑128 (MQ=255)
        atttAATGTTAATTAAAAAACAAAAAAATTAAAAATTCATAT‑AATTTATATCCACGTTATAT‑ATTTTTTTATTTGTTTATATT‑AAAAAAA‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaa                                                                                                               <  2:669251/126‑1 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAATAAAAAAAAAA‑ACAATCAACTAaaaaa‑‑aaaa‑aaaaaaaaaaa                                                                                                               >  2:790719/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCAC‑‑TAAAA‑‑AAAT‑aaaaaaaaaaaaaa                                                                                                            >  2:6500030/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATATT‑CACAAAT‑AAAAAAAAA‑AAAAAAAC‑‑AATAAA‑‑AAAT‑aaaaaaaaaaaaaa                                                                                                            >  1:3476645/1‑128 (MQ=255)
            aaGTTTAATTAAAAAACCATAAAATTAAAAATTATTAA‑AATTTAGATCCTCGGTATCT‑ATTTTTTTATTTGTTTATCTT‑AACAAAA‑AAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaa                                                                                                           <  2:4396391/128‑1 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCTTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑AAAATCCC‑‑‑ATAAA‑‑AAAT‑taaaaaaaaaaaaaaa                                                                                                          >  1:3646160/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAGACAATCCAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaa                                                                                                            >  2:3768472/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑‑AAAAAAAA‑ACAAACCAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaa                                                                                                          >  2:1674651/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCAGC‑‑TAAAA‑‑AAAT‑aaaaaaaataaaataa                                                                                                          >  1:6124841/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAAACACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaa                                                                                                          >  2:5443603/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑AAAAAAAC‑‑‑ATAAA‑‑AAAT‑taaaaaaaaaaaaaaaa                                                                                                         >  1:7209558/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTATTATTATTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAAACAC‑‑‑ATAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                                        >  1:4910748/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑AATATTTAATTTGTTTATCTT‑CACAAAA‑AAAAAAAAA‑ACAAACCCCTAaaaaa‑‑aaaa‑aaaaaaaaaaaaaaa                                                                                                           >  1:2994449/1‑128 (MQ=255)
               tttaaataaAATACAAATAAATTAATAATTCTAAT‑AATTTAGATCTTCTTGATTT‑ATTTTTTTAATTTTTTTTCTT‑CACAAAT‑AAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATT‑taaaaaaaaaaaaaaaaa                                                                                                        <  1:6585048/127‑1 (MQ=255)
               gTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaaa                                                                                                       >  1:6374483/1‑128 (MQ=255)
               gTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATAACC‑‑‑AAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaa                                                                                                       >  1:2534535/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATAAACAT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:2096177/1‑128 (MQ=255)
                 taattaaAATACCATAAAATTAATAATTCTTAT‑AATGTAGATCATATTTATCT‑ATTTTTTTATTTTTTTATATT‑AAAAAAT‑AAAAAAAAA‑AAAAAAAAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:2674813/1‑128 (MQ=255)
                 taattaaAAAAACATAAACATAAAAATTATTAT‑AATTTTTATCCTAGTGATAT‑ATTTTTTTATTTTTTTATCTT‑AACAAAA‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaact                                                                                                      <  2:534433/128‑3 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAAAAAC‑‑‑ATAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:6543912/1‑127 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑AAAAAACC‑‑AAAAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:4964447/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATATT‑CACAAAT‑AAAAAAAAA‑‑‑AAT‑‑AAAAATAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:4034587/1‑125 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:5734649/1‑127 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTATTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAAACC‑‑‑AATAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:1583326/1‑126 (MQ=255)
                   ataaaaaaaACAAAAACTTAAAAATTTTTAT‑AATTTATATCCTCGTTTTAT‑ATTTTTTTTTTTGTTTATTTT‑CACAAAA‑AAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaacta                                                                                                    <  1:6058087/125‑4 (MQ=255)
                     taaaataaaataaaaTTAAAAAATAATAA‑AATGTTTATCCACGTGTTCTAATTTTTTTATTT‑TTTATCTT‑AACAAAT‑AAAAAAAAA‑ACAAACCCC‑‑ATAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTa                                                                                                  <  2:6899295/128‑1 (MQ=255)
                     taaAATACAATAAAAATAATAATTATTAT‑AATTTAAATCCTATTGATAT‑ATTTTTTTATTTTTTTATAAT‑AAAAAAA‑AAAAAAAAA‑ACAAACCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTaa                                                                                                 <  2:1262532/128‑1 (MQ=255)
                     taaAATAACATAAAATATAAAAATCATAT‑AAATTACATACTAGTTTACT‑ATTTTTTTATTTTTTTAAATT‑AAAAAAA‑AAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTaa                                                                                                 <  2:5172167/128‑1 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:3848527/1‑124 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:6899141/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑AAAATACC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:103862/1‑123 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATATT‑CACAAAT‑AAAAAAAAA‑AAAATAACC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  1:7027388/1‑123 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:6097161/1‑128 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:3633333/1‑128 (MQ=255)
                          tataaataatataataaTTATTAT‑ATTTTATATAATAGTTATAT‑ATTTTTATATTTTTTTATCTT‑AAAAAAA‑AAAAAAAAA‑AAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                             <  2:2585424/117‑1 (MQ=255)
                             cATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAA‑AAAaaacaaaa                                                                                         >  2:7142226/1‑127 (MQ=255)
                             acaaaaaataaaaaTTATTAT‑AATTTTTAAGCTAGGGATAT‑ATTTTTTTTTTTGTTTATATT‑AACAAAA‑AAAAAAAAA‑TAAAAAACCCTTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                            <  1:3768472/120‑1 (MQ=255)
                              aTAAAATTAATAATTTTTTT‑TATTTATTTCCTCTTGTTCT‑ATTTTTTTATTTTTTTATTTT‑TAAAAAT‑AAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                       <  1:5851356/128‑1 (MQ=255)
                                  aataaataatTCTTAT‑AAAAAATATCCTACTTATCT‑ATATTTTTAATTTTTTATATT‑AAAAAAA‑AAAAAAAAA‑AAAAACCCC‑‑ATAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                     <  2:1991628/124‑1 (MQ=255)
                                  aaataataaTTTTTATAAATTTATA‑CCTCTTTATAT‑ATTTTTTTAATTTTTTAAAAT‑AAAAAAA‑AAAAAAAAA‑AAAAAACCCTTT‑‑AA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                     <  2:4940861/125‑1 (MQ=255)
                                   attAATAATTTTTAA‑AATTTATATACTTTTTTTAT‑ATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAA‑AAAAACCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                     <  2:6010554/127‑1 (MQ=255)
                                   aaaaaaaatTATTAT‑AATTTACATACAATTTATCT‑ATTTTTTTTTTTTTTTAAATTAAAAAAAA‑AAAAAAAAA‑ACAAACCCC‑‑ATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                     <  2:239686/122‑1 (MQ=255)
                                     ataaaatTATTAA‑AATTTATATAATCGTTAATT‑ATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAA‑AAAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                 <  2:3555439/124‑1 (MQ=255)
                                      aataaataTTAT‑AATTTATATAATCGTTATAT‑ATTTTTTTATTTTTTTATATT‑AAAAAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                 <  2:4285817/128‑1 (MQ=255)
                                             cTTAT‑AATTTTTATCATCGTTATAT‑ATTTTTTTATTTTTTTTTATT‑AAAAAAA‑AAAAAAAAA‑AAAAACCCCTTAAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                            <  1:5984413/128‑1 (MQ=255)
                                                     tttataTCCACCTGATAT‑ATTTTTTTATTTTTTTAAATT‑AAAAAAA‑AAAAAAAAA‑AAAAAACCC‑CATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                                    <  2:292629/123‑1 (MQ=255)
                                                     gtttgATCCTCGTGTTAT‑TTTTTTTTTTTTGTTTTTTTT‑CAAAAAA‑AAAAAAAAA‑AAAATCCCC‑‑‑TAAA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                  <  1:4124083/124‑1 (MQ=255)
                                                          atttttttttttt‑ATTTTTTTTTTTTTTTTTATT‑AAAAATT‑TAAAAAAAA‑ATAAT‑TTCTTTT‑AA‑‑AATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                              <  1:2647560/116‑1 (MQ=255)
                                                          acctgcttctctt‑atttttttattttttTA‑ATT‑AAAAAAT‑AAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTCTTTCTTAAAATTCCCTATTATACca                                                            <  2:6840175/116‑1 (MQ=255)
                                                          aaacacGTTATTT‑ATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAA‑AAAAACCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                             <  2:905702/123‑1 (MQ=255)
                                                           atatttttatat‑atttttttattttttAATATT‑AAAAAAA‑AAAAAAAAA‑AAAAAAACCTTAAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                               <  2:3363107/117‑1 (MQ=255)
                                                              ttattattt‑atttttttattt‑tttTTATT‑AAAAAAA‑AAAAAAAAA‑AAAAATCCCCTTAAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                          <  2:6332521/120‑1 (MQ=255)
                                                              tagttatat‑ATTTTTTTATATTTTAATAAT‑AAAAAAA‑AAAAAAAAA‑AAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                        <  2:6257581/120‑1 (MQ=255)
                                                                  ttataaatttatttAATTTTTTATATA‑AAAAAAT‑AAAAAAAAA‑AAAAAAACC‑‑ATAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                       <  2:1498831/122‑1 (MQ=255)
                                                                  taatatttttttttATTT‑TTAATAAT‑AAAAAAT‑AAAAAAAAA‑AAAAACCCCTTAAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                        <  2:1878391/121‑1 (MQ=255)
                                                                    ttt‑ATTTTTTTATTTGTTAATTTT‑AAAAAAT‑AAAAAAAAA‑AAAATACCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                     <  2:5554315/126‑1 (MQ=255)
                                                                      t‑atttttttattttttTATTTT‑AAAAAAA‑AAAAAAAAA‑ACAATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                 <  2:3494883/128‑1 (MQ=255)
                                                                      t‑ATTTTTTTTTTTTTTTTACTT‑AAAAAAA‑AAAAAAAAA‑AAAAAACCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                   <  2:6281463/128‑1 (MQ=255)
                                                                        ttttttttatttttttttatt‑AAAAAAA‑AAAAAAAAA‑AAAAAACAC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                  <  1:1916638/127‑1 (MQ=255)
                                                                        aTTTTTTTTTTTTTTTATTAG‑AAAAAAA‑AAAAAAAAA‑ACAAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                 <  1:6674434/128‑1 (MQ=255)
                                                                        aTTTTTTTATTTGTTTATCTT‑CACAAAT‑‑AAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTATTTATAAAAATTCAAAAATAAAACAAATTTTATTTTTa                                               >  1:6447751/1‑128 (MQ=255)
                                                                         tttttttttttttttttttt‑TA‑AAAT‑AATAAAAAA‑AAAAAATCCAATTTAA‑‑AATT‑ATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                 <  1:3552066/128‑1 (MQ=19)
                                                                         tttttttatttttttaTCTT‑‑AAAAAA‑AAAAAAAAA‑AAAATCACC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                               <  1:5636304/128‑1 (MQ=255)
                                                                         tttttttatttttttaT‑AA‑AAAAAAA‑AAAAAAAAA‑AAAAACCCCTAAAAAA‑‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                 <  2:1409502/128‑1 (MQ=255)
                                                                         ttttttaTTTTTTTTATATT‑AAAAAAT‑AAAAAAAAA‑A‑AAACCAATTAAAAA‑‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                 <  2:2139972/128‑1 (MQ=255)
                                                                         tttttatATTT‑TTTATCTT‑CACAAAA‑AAAAAAAAA‑AAAATAAC‑‑ATTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                               <  2:5059144/128‑1 (MQ=255)
                                                                            ttttATTTTTTTTTATT‑AAAAAAA‑AAAAAAAAA‑AAAAAACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                             <  1:6288051/128‑1 (MQ=255)
                                                                                 atttttaaTCTT‑CA‑AAAA‑AAAAAAAAA‑AAAAACCCACTTTAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAATACTAAACACAAACTCTATTTCTTAAAATTCCCTATTATACCACCTTTTATTTTTAAAATaa                                         <  2:3010051/121‑1 (MQ=255)
                                                                                     atttttaataaaaaaT‑AAAAAAAAA‑AAAATACCATAT‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                     <  2:4834031/116‑1 (MQ=255)
                                                                                      ttttttaaaaaaaaa‑aaaaaaaaa‑aaaATCCC‑‑‑ATATA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                   <  1:5518530/117‑1 (MQ=255)
                                                                                      ttATATT‑AAAAAAT‑AAAAAAAAA‑AAAATAACC‑‑TTAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                   <  2:2332246/128‑1 (MQ=255)
                                                                                       ttaatt‑CACAAAT‑AAAAAAAAA‑A‑AAAAACCATAAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                   <  2:409383/124‑1 (MQ=255)
                                                                                         tatattaaaaaT‑AAAAAAAAA‑AAAAAAACCTTTAAAATTTAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                     <  2:6463775/120‑1 (MQ=255)
                                                                                         atattaaaaaaT‑AAAAAAAAA‑AAAAATCCCCTTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                   <  2:6404478/120‑1 (MQ=255)
                                                                                         aaat‑CAAAAAA‑AAAAAAAAA‑AAAAAACCCTTTAAAATTAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatat                                    <  2:5825001/125‑1 (MQ=255)
                                                                                            ttaaaaaaa‑aaaaaaaaa‑aaaATACCC‑TAAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                               <  2:6128999/123‑1 (MQ=255)
                                                                                             attaaaaa‑aaaaaaaaa‑aaaaaaaCCCATTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                               <  2:4512229/124‑1 (MQ=255)
                                                                                                caAAT‑AAAAAAAAA‑ACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAA‑AAAATATTTTTAATAAAAAACCAAATTAAACCAATTTTTATTTTAAAAAAAAAATTTTTACATAatat                         >  1:5484655/1‑128 (MQ=255)
                                                                                                 aaaT‑AAAAAAAAA‑AAAAT‑CCAATTAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                          <  2:3921741/128‑1 (MQ=255)
                                                                                                   aT‑AAAAAAAAA‑ACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTAAATTTGTTAAAATAACCTATTTAACCACATTTATTTTTAAAAATAACATATTGAAAAAatataaat                     >  2:7040511/1‑128 (MQ=255)
                                                                                                       aaaaaaaa‑aaaaTACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                    <  2:4442371/128‑1 (MQ=255)
                                                                                                              a‑aCAATCCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACAAAAAACAAACTATATTTATTAAAATAGCAATTTTAACCAAATTTTTTTTTTAAAATAATATATTGAAATAATTTATTTATAaaat              >  2:5731556/1‑128 (MQ=255)
                                                                                                                 aaaaatacccataaa‑‑aata‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata             <  1:91047/117‑1 (MQ=255)
                                                                                                                 aaaaaaaactttAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatata             <  1:7041302/119‑1 (MQ=255)
                                                                                                                  aaaatcaccataaa‑‑aatt‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat            <  1:6970169/118‑1 (MQ=255)
                                                                                                                  aaaataaaattaaa‑‑aatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat            <  2:1125574/119‑1 (MQ=255)
                                                                                                                    aaaatcattaaa‑‑aatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat          <  2:2454532/121‑1 (MQ=255)
                                                                                                                     ataacattAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata         <  2:568537/122‑1 (MQ=255)
                                                                                                                     aacaaattaaa‑‑aattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat          <  1:5692697/122‑1 (MQ=255)
                                                                                                                      tcccattaaa‑‑aatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATATCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa        <  1:5801133/123‑1 (MQ=255)
                                                                                                                      aaaacttAAA‑‑ATAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa        <  1:1772678/123‑1 (MQ=255)
                                                                                                                      aaaaattAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa        <  1:803868/123‑1 (MQ=255)
                                                                                                                       aacattaaa‑‑aattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa        <  2:314272/124‑1 (MQ=255)
                                                                                                                            taaa‑‑aattaaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta   <  2:5511466/128‑1 (MQ=255)
                                                                                                                            |                                                                                                                                  
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑AATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAA‑ACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTAT  >  CP016816/202369‑202615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑