BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,937	0	C	A	37.9%	1705.0 / 254.3	1244	intergenic (+321/+137)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base C (388/347); new base A (356/92); total (757/487)
Fisher's exact test for biased strand distribution p-value = 6.00e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1265 total aligned reads displayed.

CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203812‑204064

 cATTTTTAAAAAAGCCTATGTTTTAGGCTTTTTATTTTACTTTTAAAAATTAAAACGCTTTAAAAGTGTTTTTTTTTG‑GG‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCa                                                                                                                                  <  1:5737067/128‑1 (MQ=255)

 cATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAAGATTTGGATCa                                                                                                                                  >  2:6574119/1‑128 (MQ=255)

   tttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTATGATTTTGATCaa                                                                                                                                 >  2:3652049/1‑128 (MQ=255)

    ataataaaaaGCCTAGATCATAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTATTATTTGGTTCAGcc                                                                                                                               >  2:4447604/6‑128 (MQ=255)

        taaaattccTATGTTATTGTATTTTTAATATAATTATTAAAATTAAAACTCTTTCAAATTTTATTTTTTAT‑GCTT‑‑TT‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                                          <  2:640795/121‑1 (MQ=255)

                cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTTTTTTT‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATAAACCAAAAata‑t                                                                                                                      >  1:2378024/1‑128 (MQ=255)

                       cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑TTGTG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAAAAAAAGTAAGTTGTTGCTCCACCAAAACGA‑TTTAAACAA‑AAt                                                                                                          >  2:1270033/1‑128 (MQ=255)

                       cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGT‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑TAAAAAAAAAATTATATTTTGTTAAAACAAAA‑AA‑TATTaaaaa‑aaaat                                                                                                        >  2:371181/1‑125 (MQ=255)

                       atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAATTAAAATTAATTTTTGGTAAAAACAATAGTT‑TATAAAAAA‑AAt                                                                                                          >  2:1998218/2‑128 (MQ=255)

                       atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGT‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑TAAAATAAAATTAAAATTTGAATCAAACAAAACTA‑AAAAAAAAA‑AAtt                                                                                                         >  1:6181697/2‑128 (MQ=255)

                       atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGT‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAATCTTTGGAAAAACCAAAACAT‑AAACAAAAA‑AAtt                                                                                                         >  2:7143033/2‑128 (MQ=255)

                        tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑CC‑T‑‑TG‑‑‑‑‑‑TTATTTTTTTTTTT‑‑‑TTT‑TTT‑AAATATAAAATAAAAATTTGTATCAATAAAAAATT‑AAAAAAAAA‑AAta                                                                                                         >  1:1158324/1‑127 (MQ=255)

                         aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAATTTTTTTAAAAACCAAAAATA‑TAAAAAAAA‑AATTa                                                                                                        >  1:2114607/1‑128 (MQ=255)

                         aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAATAAAAATTTTTTTAAACCAAAACTATTAAAAAAAA‑AAtt                                                                                                         >  1:4351900/1‑128 (MQ=255)

                         aGGCGTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑TAAAAAAAAATAAAAATTAGGTTACACCAAAACTA‑AAGAAAAAA‑AAtat                                                                                                        >  1:6991374/1‑126 (MQ=255)

                             tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAAATAAGATTTGTATCAACCAAAAATA‑TAAAAAAAA‑AATTaaaaaaa                                                                                                  >  1:5591231/1‑128 (MQ=255)

                               tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAAATTAAAATTTTTTAAACAAAAAAAA‑TATCAAAAA‑AATTaaaaaa                                                                                                   >  1:6770206/1‑128 (MQ=255)

                               tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAAGTAATATTTGTATAAACAAAAAAAA‑TATAAAAAA‑AATtaaataaa                                                                                                  >  2:861451/1‑128 (MQ=255)

                               tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTTAAAAAATAAAATTAATATTTGGAACAACCAAAACTA‑TAACAAAAA‑AATTaaaaaaaa                                                                                                 >  1:6365704/1‑128 (MQ=255)

                                ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAAGATTTTGTAAAACAAAAAATA‑TATAAAAAA‑AATTaaaaaaaa                                                                                                 >  2:5319443/1‑128 (MQ=255)

                                  attatATTTTTAAACATTTAAAATCTTTAAAATTTTATTTTTTTG‑TG‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAAta                                                                                               <  1:5771933/128‑1 (MQ=255)

                                   ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAATTAATATTTTGATAAAAAAAAAAAA‑TATAAAAAA‑AATTaaaaaaaaaa                                                                                               >  2:1036203/1‑126 (MQ=255)

                                    tttaCTTTTAAAAATTACAACTTTTTTAATTTTTTTTTTTTAT‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAAtag                                                                                              <  1:6237647/126‑1 (MQ=255)

                                    tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAATATTTGGATCAACAAAAAATA‑Tttaaaaaa‑aattaaaaaaaaatt                                                                                              >  2:1893841/1‑125 (MQ=255)

                                    tataATTATAAAAATTAAAACTCTTTAAATTTGTTTTTTTTAT‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAAtagt                                                                                             <  1:5888306/128‑1 (MQ=255)

                                        cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGT‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAATTAATATTTGGATAAACCAAAAATT‑TTTAAAAAA‑AATTAAAAAAAAtattttatt                                                                                        >  2:4560053/1‑126 (MQ=255)

                                         ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAATGTTA‑ATTTTTTTTAAACAAAAAAA‑TATTAAAAATAATTAAAAAAAAtactttat                                                                                         >  2:4078924/1‑127 (MQ=255)

                                          tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAATATTTGGTTAAAACAAAAATT‑TTTAAAAAA‑AAATAAAAAAAAtagttatttt                                                                                       >  2:5028784/1‑123 (MQ=255)

                                           ttaaaaaTTAAAACGCTTTAAATGTGTTTTTTTTTG‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAAtagtttagtt                                                                                       <  1:880167/122‑1 (MQ=255)

                                           aTCAACATTAAAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAAGTTATTATTTGATAAAACAAAAAAT‑TATAAAAAA‑AATTTAAATAATtattttatttt                                                                                      >  2:2201064/1‑127 (MQ=255)

                                            tCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTTTTATTTATTT‑AAAAAAAAAAAAAAGATTTTAAAAAACAAAAAAAA‑AATCAAAAA‑AATAAATAAAAAatgtttattt                                                                                       >  2:4222428/1‑128 (MQ=255)

                                             cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTTT‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAAATAAAATTTTTATAAACCAAAAAAA‑TAACAAAAA‑AATAAAAAAAAAtatataatatga                                                                                     >  2:6463344/1‑118 (MQ=255)

                                             cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAAATAATATTTGGAAAAACAAAAAATA‑TAAAAAAAA‑AATTAAAAAAAAtatttttttttat                                                                                    >  2:3081861/1‑121 (MQ=255)

                                              aaaaTTACAACGTTTTTAATTTTTATTTTTTAT‑GT‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGt                                                                                   <  2:5410801/125‑1 (MQ=255)

                                                  ttACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAATATTTGGATAAAACAAAAATA‑TAAAAAAAA‑AATTAAAAAAAATATTTTAGTTTAttttaa                                                                               >  1:6580513/1‑126 (MQ=255)

                                                        cGCTTTAAATTTTTATATTTTAGTGT‑T‑‑TT‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                                                                        <  1:5475497/128‑1 (MQ=255)

                                                         gCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAAGAACATTTTTGAACAACCAAAACTA‑AATAAAAAA‑AAAAAAAAAAAAAACTTTTATTGGTTTTCaataaagc                                                                        >  1:4770180/1‑122 (MQ=255)

                                                            ttCAAAGTGTATTTTTTAG‑GC‑T‑‑TGT‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAATATTTTGATAAACCAAAAATA‑TATAAAAAA‑AATTAAAAAAAATATTTTTGTTGATTTTAAAAtaataatat                                                                    >  2:1428302/1‑120 (MQ=255)

                                                            ttCAAAGTGTATTTTTTAG‑GC‑T‑‑TGT‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAAAAAAAATTTTGATAAAACAAAAATA‑TAAAAAAAA‑AATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                                                                    >  1:1008898/1‑119 (MQ=255)

                                                            ttCAAAGTGTATTTTTTAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAATTAATATTTGGATAAACCAAAAATA‑TATAAAAAA‑AATTAAAAAAAAATGTTTATTTTAGTTTaaaaaattaattat                                                                   >  2:813817/1‑118 (MQ=255)

                                                            ttCAAAGTGTATTTTTTAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAAGTATAATTTGTAAAAAACAAAAAAA‑TTTAAAAAA‑AATAAAAAAAAAAATTTAATTTGAGTTTAAAAtattaaaaaa                                                                   >  2:6876906/1‑119 (MQ=255)

                                                             tCAAAGTGTATTTTTTAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAATTATTATTTTTATAAACCAAAAATA‑AATAAAAAA‑AATTAAAAAAAATTTTTTTTTTTATATTAAAATATGCataa                                                                    >  2:1140374/1‑127 (MQ=255)

                                                                         ttttAG‑GC‑T‑‑TGTT‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAAAAAAATTAATATTTGTATCAAACAAAAAAT‑TTTAAAAAA‑AATTTAAAAAAATATTTTTTTTTAGTTTAAAATCTACAAATATAgataaattt                                                        >  2:4823444/1‑120 (MQ=255)

                                                                          tttAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TTT‑AAAAATAAAAGTAATATTTGGTTAAACCAAAAATA‑TATAAAAAA‑AATTAAAAAAAATATTTTATTTGAGTTTCAAATATGAATATATATTACaaaataaa                                                     >  2:2746513/1‑123 (MQ=255)

                                                                                   ttttttttgttt‑‑ttttttttttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa                                                      <  1:1743389/117‑1 (MQ=255)

                                                                                    ttttttttttt‑‑ttttttttttt‑‑‑ttt‑ttt‑ttAAATATAATTTTTATTTGTTTATAAAAAAAATA‑TATATAAAA‑AATTTTAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAt                                                     <  2:6992560/118‑1 (MQ=255)

                                                                                      ttttttttt‑‑ttttttttttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  1:808140/120‑1 (MQ=255)

                                                                                      ggcttgttt‑‑ttttttttttt‑‑‑ttt‑ttt‑AAAAATAAAATTAATATTTGGTACAACCAAAAATA‑TTTAAAAAA‑AAATAAAAAAAATATTTTATTTTATTTTAAAAAATTCATATAAATAAAAAATGAAttt                                                   >  2:2863889/9‑128 (MQ=255)

                                                                                      ggcttgttt‑‑ttttttttttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATATTTATGTTTATTTTAAAAACTGGATAATTATTACAAATCAAttt                                                   >  2:2464961/9‑128 (MQ=255)

                                                                                       tttttttt‑‑ttttttttttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCAACTAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  1:1325904/121‑1 (MQ=255)

                                                                                         tgtttt‑‑ttttttttttt‑‑‑ttt‑ttt‑AAAAATAAAATTAATATTTGGTTAAACCAAAAATA‑TATAAAAAA‑AATTAAAAAAAATTTTTTATTTTTTTTTAAAAATTGCATATATATTAAAAAGTAAtttttt                                                >  2:3373932/6‑125 (MQ=255)

                                                                                                 ttttttttttt‑‑‑ttt‑tGT‑TAAAATATATTTAAGATTTTGATATACAAAAAATA‑TATTAAAAA‑AATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:607944/128‑1 (MQ=255)

                                                                                                 ttttttttttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCCACCAAAACTA‑TTTAAAAAA‑AATTAAAAAAAATAGTTTATTTGAGTTTCAAAACAGAATATATATTACAAAGGAATTTATGATATaa                                          >  2:5145168/1‑128 (MQ=255)

                                                                                                 ttttttttttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAGAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:7217786/128‑1 (MQ=255)

                                                                                                  tttttttttt‑‑‑ttt‑ttt‑AAAAATAATAGTAAGATTTGGATCAACCAAAATTA‑TATCATAAT‑AATTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                         <  1:2672797/128‑1 (MQ=255)

                                                                                                    tttttttt‑‑‑ttt‑tGT‑ATATATAAATTTAAGATTTGGTTCATCCAAAACTA‑TATCTAAAA‑AATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  2:3859667/128‑1 (MQ=255)

                                                                                                    tttttttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCAACAAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:7137895/128‑1 (MQ=255)

                                                                                                       ttttt‑‑‑ttt‑tGT‑AAAAAAAAAATTAATATTTTGATAAACCAAAAAAA‑TATAAAAAA‑AATTAAAAAAAATAGTTTATTTGATTTTAAAATATGCATTTTTTTTACAAAGGATTTTATTATATAAAAAAAt                                    >  2:5620878/1‑128 (MQ=255)

                                                                                                         ttt‑‑‑ttt‑tGT‑AATAATATAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                  <  2:6794670/128‑1 (MQ=255)

                                                                                                         ttt‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATTAAATAAAACTA‑TATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                  <  1:371181/128‑1 (MQ=255)

                                                                                                           t‑‑‑ttt‑tGT‑TAAAATAAAAGTTAGTTTTTGATAAAACAAAAATT‑TATTAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                <  1:1927128/128‑1 (MQ=255)

                                                                                                           t‑‑‑ttt‑tGT‑AAAAATAAAAGTAAGATTTGGATCAACTAAAACTA‑TATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                <  2:1689630/128‑1 (MQ=255)

                                                                                                               ttt‑tGT‑AAAAATAAAAGTAATATTTTTATCAAAAAAAAATA‑TATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  1:3637351/128‑1 (MQ=255)

                                                                                                                tt‑tGT‑AATAATAAAAGTAAGATTTGGATCAACCAAAAATA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  1:3096819/128‑1 (MQ=255)

                                                                                                                 t‑tGT‑AAAATTAAAAGTAAGATTTGGATCATCCAAAACTA‑TATAAAAAA‑AATTAAAAAAAATAGTTTATTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                             <  2:5982304/128‑1 (MQ=255)

                                                                                                                   ttt‑AAAAATAAAAGTAAGATTTTGATCAAACAAAAATA‑TATCAAATA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt                            <  1:2275419/126‑1 (MQ=255)

                                                                                                                     t‑AAAATTAAAAGTATGTTTTGTATAATCTAAAATTT‑TATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                          <  1:3851137/128‑5 (MQ=255)

                                                                                                                        tatatatAAGTAAGATTTTGATAAACATAAACTA‑TATGAAAAA‑AATTAATAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGATAAAAATGGATTatcaact                        <  2:5510844/125‑7 (MQ=255)

                                                                                                                        taaaTAAAAGTAAGATTTGGATCAATCAATATTA‑TATTAAAAA‑AATTAAATAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  1:4092325/127‑1 (MQ=255)

                                                                                                                           tttatttttaGATTTGTATTAATAAAAATTA‑T‑TTAATAA‑AATTATAATTAATAGTTTAGTTGAGTTTTAAATTTGAATATATAGTAAAAAGGAATTTTTGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:5368232/119‑1 (MQ=255)

                                                                                                                           attataGTAAGATTTTGATTATATATAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCTAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                     <  2:3174450/123‑1 (MQ=255)

                                                                                                                           ataataTTATGATTTGGATTAACTATATTTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAt                     <  1:5069014/128‑1 (MQ=255)

                                                                                                                             attaGTAAGATTTGGATCAACAAAAACTA‑TATCAAAAA‑AATTATATAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  1:4627773/125‑1 (MQ=255)

                                                                                                                              aaaGTAAGATTTGGATCAACCATAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  2:233195/128‑1 (MQ=255)

                                                                                                                              aaaGTAAGATTTGGATCAAACAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:6864230/128‑1 (MQ=255)

                                                                                                                              aaaGTAAGATTTGGATAAAACAAAAATA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:1497038/128‑1 (MQ=255)

                                                                                                                               aaGTAAGATTTGGATCAACCAAAACTA‑TATCATAAA‑TATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  2:4363109/128‑1 (MQ=255)

                                                                                                                               aaGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  1:3472666/128‑1 (MQ=255)

                                                                                                                               aaGTAAGATTTGGATCAACCAAAAATA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  2:747858/128‑1 (MQ=255)

                                                                                                                                  tAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                                                >  1:7050286/1‑78 (MQ=255)

                                                                                                                                   aaGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  1:491237/1‑128 (MQ=255)

                                                                                                                                   aaGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  2:2541115/1‑128 (MQ=255)

                                                                                                                                   aaGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             >  1:2889653/1‑128 (MQ=255)

                                                                                                                                    aGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaacta                       <  2:6224312/117‑8 (MQ=255)

                                                                                                                                    aGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:6147994/1‑128 (MQ=255)

                                                                                                                                    aGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:6298195/1‑128 (MQ=255)

                                                                                                                                    aGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGAATTAGATGATAATCCAtatttt            >  1:3273289/1‑128 (MQ=255)

                                                                                                                                     gATTTGGATCATATATAATTA‑TATCATAAT‑ATTTAATAAAATTAGTTTAGTTGAGTTTCATATTTTCATATATAGTACAAATTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           <  2:3489760/128‑1 (MQ=255)

                                                                                                                                     gATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  2:5744083/1‑128 (MQ=255)

                                                                                                                                      aTTTGTATTAAACAAATCTA‑TATAAAAAA‑AATTTATAAAAATAGTTTAGTTGATTTTCAAATATGTATATATAGTACAAAGGAATTTATTATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  2:4709335/128‑1 (MQ=255)

                                                                                                                                      aTTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATAAGATGATAATCCATTATTTaa          >  2:1528509/1‑128 (MQ=255)

                                                                                                                                      aTTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATACATTTTTTaa          >  2:7047956/1‑128 (MQ=255)

                                                                                                                                       tttGGATAAACCAATACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATGTAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  1:6001563/128‑1 (MQ=255)

                                                                                                                                       tttGGATAAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  2:5842538/128‑1 (MQ=255)

                                                                                                                                        ttGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATACTCCAGTTTATAAtt        >  1:6444911/1‑128 (MQ=255)

                                                                                                                                         tGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   >  1:1637360/1‑116 (MQ=255)

                                                                                                                                           gATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg     >  1:4476571/1‑128 (MQ=255)

                                                                                                                                             tCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                        >  2:6687849/1‑101 (MQ=255)

                                                                                                                                             tCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                        <  1:6687849/107‑7 (MQ=255)

                                                                                                                                              cAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  2:1769970/101‑2 (MQ=255)

CCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑GC‑T‑‑TG‑‑‑‑‑‑T‑‑TTTTTTTTTTT‑‑‑TTT‑TGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTA‑TATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203812‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`