Predicted mutation
evidence seq id position mutation annotation gene description
RA CP016816 484,793 A→T intergenic (‑102/+69) JCVSYN2_02220 ← / ← JCVSYN2_02225 hypothetical protein/50S ribosomal protein L7/L12

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816484,7930AT97.8% 9723.5 / 68.8 3325intergenic (‑102/+69)JCVSYN2_02220/JCVSYN2_02225hypothetical protein/50S ribosomal protein L7/L12
Reads supporting (aligned to +/- strand):  ref base A (41/32);  new base T (1587/1663);  total (1629/1696)
Fisher's exact test for biased strand distribution p-value = 2.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 3424 total aligned reads displayed.

ATTATTTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTTCA  >  CP016816/484665‑484916
                                                                                                                                |                                                                                                                            
       aaaaaaTAGTCAAAACTCATATATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaa                                                                                                                       <  1:3495909/128‑1 (MQ=255)
          aaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaagc                                                                                                                    <  2:4396384/128‑3 (MQ=255)
          aaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATAATATATTTTAat‑ataaaaagc                                                                                                                    >  2:5331107/1‑126 (MQ=255)
            aTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCaa                                                                                                                  <  1:4437745/128‑1 (MQ=255)
             tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                                 <  1:67690/128‑1 (MQ=255)
             tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGAAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                                 <  2:5027168/128‑1 (MQ=255)
              aGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAtt                                                                                                                >  2:1317927/1‑128 (MQ=255)
                tCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGATCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaa                                                                                                              <  1:3129954/128‑1 (MQ=255)
                 cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                             <  1:1859292/128‑1 (MQ=255)
                 cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                             <  2:3407954/128‑1 (MQ=255)
                 cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                             <  2:2688551/128‑1 (MQ=255)
                  aaaaCTCATAGATTTAATCCTTTTATAGTAGACAAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAac                                                                                                            <  1:4965000/128‑1 (MQ=255)
                    aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                          <  1:3775682/128‑1 (MQ=255)
                     aCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacaca                                                                                                         >  2:6987415/1‑128 (MQ=255)
                      cTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAAATATATTTTTTTTTAAT‑ATAAAAAGCAATTaaacaaac                                                                                                        >  1:2625120/1‑128 (MQ=255)
                        cATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAATAAGCAATTTAACACACaa                                                                                                      >  1:1629794/1‑128 (MQ=255)
                            gATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAAc                                                                                                  <  2:2172183/128‑1 (MQ=255)
                            gATATAATCCTTTTAAAGGTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTACACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAAc                                                                                                  <  1:4658607/128‑1 (MQ=255)
                               ttAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGATCTTAACAACTAAACTACACTCGATTATTTAATTATA‑TTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                              <  2:1079252/128‑1 (MQ=255)
                                 aaTCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAcc                                                                                             <  1:1970744/128‑1 (MQ=255)
                                   tCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATAAAAAACACAAAAACTCACCCa                                                                                           >  1:2237735/1‑128 (MQ=255)
                                    ccTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAt                                                                                          <  1:4295614/128‑1 (MQ=255)
                                     cTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAtt                                                                                         <  1:3356568/128‑1 (MQ=255)
                                     cTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAtt                                                                                         <  1:7062082/128‑1 (MQ=255)
                                      ttttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccataat                                                                                        <  1:116923/128‑6 (MQ=255)
                                       tttATAGTTGAGCAAAAAATAACTTAGAGCATAGCAGAAGATCTTAACAACTAAACTACACTCGTTTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCAATTAt                                                                                       <  1:842764/128‑1 (MQ=255)
                                       tttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGAGTATTTAATTATTTTTTTTTTTAAT‑ATAAAAAGCAATTACACCCACAAAAACTCACCCATTAt                                                                                       >  1:958401/1‑128 (MQ=255)
                                        ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATg                                                                                      >  1:6225229/1‑128 (MQ=255)
                                        ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACACATTATg                                                                                      >  2:1900577/1‑128 (MQ=255)
                                         tatcGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTCTATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATgg                                                                                     <  2:4911182/128‑1 (MQ=255)
                                         tataGTTGACCAACAAATAAGATCGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATgg                                                                                     <  1:5072327/128‑1 (MQ=255)
                                          ataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGt                                                                                    <  2:1606456/128‑1 (MQ=255)
                                          ataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGt                                                                                    <  2:2550396/128‑1 (MQ=255)
                                            aGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAtt                                                                                                                >  2:3828555/1‑98 (MQ=255)
                                             gTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAg                                                                                 >  2:4126223/1‑128 (MQ=255)
                                               tGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTAACCCATTATGCTTAGtt                                                                               >  1:5202348/1‑128 (MQ=255)
                                                gACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGttt                                                                              >  1:6915243/1‑128 (MQ=255)
                                                     aataaTAAGAAAGAGCAAAGCAGAAGATCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                         <  1:3625450/125‑1 (MQ=255)
                                                     aaaatTAAGATAGAGCATAGCAGAAGCTCATAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                         <  1:1005954/128‑1 (MQ=255)
                                                     aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                         <  2:5764404/128‑1 (MQ=255)
                                                     aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                         <  2:3941433/128‑1 (MQ=255)
                                                     aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                         <  1:5890034/128‑1 (MQ=255)
                                                               tAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaaa                                                               <  1:2097299/128‑1 (MQ=255)
                                                               tAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaaa                                                               >  1:6484992/1‑128 (MQ=255)
                                                                 gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccat                                                                                           <  1:1526504/98‑3 (MQ=255)
                                                                 gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                             <  2:6347767/128‑1 (MQ=255)
                                                                  agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAtt                                                            <  2:7130707/128‑1 (MQ=255)
                                                                  agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGAATATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAtt                                                            <  2:2021440/128‑1 (MQ=255)
                                                                    cATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCATAAATTTg                                                          >  1:1753414/1‑128 (MQ=255)
                                                                      tAGCAGAAGCTCTTAACAACTAAACTACACTAGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                        <  2:4774505/128‑1 (MQ=255)
                                                                         cAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGattat                                                     >  2:2297070/1‑128 (MQ=255)
                                                                          aGAAGCTCTTATAAACTAAACTACACACGATTATATAAATATAATTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTATAAATTATTCAAAAATTTGattatt                                                    <  1:4844937/128‑1 (MQ=255)
                                                                          aGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGattatt                                                    <  1:7205840/128‑1 (MQ=255)
                                                                           gAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTCattaata                                                   >  2:3538972/1‑125 (MQ=255)
                                                                            aaGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTAtttt                                                  >  2:2905169/1‑128 (MQ=255)
                                                                              gCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTaa                                                >  1:3907156/1‑128 (MQ=255)
                                                                               ctctTAACAACTAAACTACACTCGATTATATAATTATATTTTTTTTTAAT‑ATAAAAAGCAAGTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGAATATTTTaaa                                               <  2:5611327/128‑1 (MQ=255)
                                                                                tctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                        <  1:2348251/118‑1 (MQ=255)
                                                                                tctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAAt                                              >  1:6121481/1‑128 (MQ=255)
                                                                                tctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAA‑ATAAAAAGCAATAAAACACACAAAAACTCACCCAATATGGTGAGTTTAAAAATTATACAAAAATTAGATTATTATAAAt                                              >  2:2807174/1‑128 (MQ=255)
                                                                                  ttAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAGT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAATATGGTGAGTTTAATAATTATTCAAAAATTTGATTATTTTAAATCa                                            >  1:5630413/1‑128 (MQ=255)
                                                                                  ttAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGATTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCa                                            >  2:1729840/1‑128 (MQ=255)
                                                                                  ttAACAACTAAACTACACTCGATTATTTAATTATA‑TTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCaa                                           >  1:2978753/1‑128 (MQ=255)
                                                                                    aacaacTAAACTACACTCGATTATTTAATTATA‑TTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAAtt                                         <  2:5464152/128‑1 (MQ=255)
                                                                                      caacTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAATATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAAtt                                         <  1:3255818/128‑1 (MQ=255)
                                                                                       aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAATAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                       <  2:3169537/128‑1 (MQ=255)
                                                                                        actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGaa                                      >  2:1481868/1‑128 (MQ=255)
                                                                                        actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGaa                                      <  1:6030560/128‑1 (MQ=255)
                                                                                        actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAAACAATTGaa                                      <  2:727728/128‑1 (MQ=255)
                                                                                        actaaactaCACTAGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGaa                                      <  2:85752/128‑1 (MQ=255)
                                                                                           aaactaCACTCGATCATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAGTTGAAGCt                                   <  2:4239807/128‑1 (MQ=255)
                                                                                            aacaaaaatagATAATTTAAATATATTTTTTTTTAAT‑ATAATAAGCAATTAAACACAAAAAAACTCACCCATTATGGTGAGTTTATAAATTATTCTAAAATTTGATTATTTTAAATCAATTGAAGCTc                                  <  2:3694019/118‑1 (MQ=255)
                                                                                               taCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAg                               >  1:4149940/1‑128 (MQ=255)
                                                                                               taCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAg                               <  2:6707822/128‑1 (MQ=255)
                                                                                               taCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAg                               >  2:6092679/1‑128 (MQ=255)
                                                                                               taCACTCGATAATTTAATTATATTTTTTTTTAAT‑AAAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCtggag                               <  2:6465122/128‑5 (MQ=255)
                                                                                                acacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACACATTATTGTGAGTTTAAAAATAATTCAAAAATTTAATTATTTTAAATCAATTGAAGCTACAga                              >  1:5359962/1‑127 (MQ=255)
                                                                                                acacTCGATTATTTAATTATATATTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAATATGGTGAGTTTAAAAATTTTTCAAAAATTTGATTATTTTAAATCACTTGAAGCTCCAGc                              >  1:4548507/1‑128 (MQ=255)
                                                                                                 cacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCt                             >  1:1252748/1‑128 (MQ=255)
                                                                                                  acTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTg                                                          <  1:2750217/98‑1 (MQ=255)
                                                                                                   cTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTc                           >  2:4635276/1‑128 (MQ=255)
                                                                                                   cTCGATTATTTAATTATATTTTTTTATAAT‑ATAAAAATCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTc                           <  1:5473262/128‑1 (MQ=255)
                                                                                                     cGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCaa                         <  1:5766436/128‑1 (MQ=255)
                                                                                                      gATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAAc                        >  2:2389590/1‑128 (MQ=255)
                                                                                                      gATTATTTAATTATAATTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAAc                        >  2:1195072/1‑128 (MQ=255)
                                                                                                       attattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACt                       >  1:13943/1‑128 (MQ=255)
                                                                                                        ttattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTa                      >  2:3284609/1‑128 (MQ=255)
                                                                                                        ttattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTa                      >  2:5990157/1‑128 (MQ=255)
                                                                                                        ttattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTa                      <  2:5887258/128‑1 (MQ=255)
                                                                                                        ttattTAATTATATTTATTTTTAAT‑ATAAAAAGCAATAAAACACACAAAAACTCAACAATTATGTTTATTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATAGAAGCTCAAGCTTCAAATa                      >  2:302741/1‑128 (MQ=255)
                                                                                                          attTAATTATATTTTTTTTTAAT‑ATAAAAATCAATTAAACACACATAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAt                    <  2:6208467/128‑1 (MQ=255)
                                                                                                            ttAATTATATTTTTTTATAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt                  <  1:2874988/128‑1 (MQ=255)
                                                                                                             tAATTATATTTTTTTTTAAT‑ATGAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTa                 <  2:6596930/128‑1 (MQ=255)
                                                                                                               aTTATATTTTTTTTTTAATATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAg                <  2:6827653/128‑1 (MQ=255)
                                                                                                                  atatTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGCAGCTCCAGCTTCAACTAATTTAGCgtt            >  2:4507732/1‑128 (MQ=255)
                                                                                                                    atTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATAATTATAACTCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCa          >  1:4043887/1‑128 (MQ=255)
                                                                                                                      ttttttataAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAtt        <  1:6640970/128‑1 (MQ=255)
                                                                                                                       tttttttaAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAttt       <  1:6366852/128‑1 (MQ=255)
                                                                                                                       tttttttaAT‑ATAAAAAGAAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAttt       <  2:5144617/128‑1 (MQ=255)
                                                                                                                        ttttttaAT‑ATAAAAAGCAATTAAACTCACTAAAACTCAACCATTATGGTGAGTTTAAATATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATttc      <  1:248048/128‑1 (MQ=255)
                                                                                                                                |                                                                                                                            
ATTATTTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCTTCA  >  CP016816/484665‑484916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑