Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4600CA34.3% 2099.2 / 239.8 1529intergenic (+238/‑437)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (590/384);  new base A (144/364);  total (735/794)
Fisher's exact test for biased strand distribution p-value = 1.20e-32
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1612 total aligned reads displayed.

TTTATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAA  >  CP016816/202333‑202589
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 ttATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATAATCTATTA‑TTTTATTTGTTAATATT‑ca                                                                                                                                     >  1:3443346/1‑128 (MQ=255)
  tataGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑cac                                                                                                                                    <  1:6227905/128‑1 (MQ=255)
  tataGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑cac                                                                                                                                    <  1:9328255/128‑1 (MQ=255)
  tataGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑cac                                                                                                                                    <  2:3898951/128‑1 (MQ=255)
     aGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTT‑TTTTATTTTTTTATCTT‑AAC‑aaa                                                                                                                                >  2:1117659/1‑128 (MQ=255)
      gATTAAAGTAAAAGTATTGAAGTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAt                                                                                                                               <  1:8209937/128‑1 (MQ=255)
      gATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAt                                                                                                                               >  1:7983282/1‑128 (MQ=255)
        ttAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTT‑ATTTATAATTTTATATT‑CAC‑AAAT‑aa                                                                                                                            >  2:8518389/1‑128 (MQ=255)
           aatgaaaagtaTTGAAGGTATTGTAAATAATATAGTTAATGTTAATTAAAATAACATAAACTTAATAATTCTTATAAAGTAGCTCCTCGGGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑aaaaa                                                                                                                         <  2:8743306/124‑1 (MQ=255)
           aagtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATAAAATAAACTTAATAATTCTTATAATGTAGATACTCTAGATATATTT‑TTTTATTTATTTATCTT‑AAC‑AAAT‑aaaaa                                                                                                                         >  2:1536623/1‑128 (MQ=255)
            agtaaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATATAGATACTAAAAATCTAATT‑TATTATAATATTATCAT‑Aaa‑aaaa‑aaaaaa                                                                                                                        >  1:4515963/1‑128 (MQ=255)
             ttaaaagtaGTGAATTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGAACCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑aaaaaaa                                                                                                                       <  2:2433369/127‑1 (MQ=255)
              taaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑aaaaaaaa                                                                                                                      <  2:533728/128‑1 (MQ=255)
               aaaagtaGTGAAGTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGAAGATCCTCTATATCTATTA‑TTTTATTAGTTTATCTT‑CAC‑AAAT‑aaaaaaaaa                                                                                                                     >  2:1747489/1‑128 (MQ=255)
               aaaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑aaaaaaaaa                                                                                                                     <  2:6873956/128‑1 (MQ=255)
                aaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTTATCTATTT‑TATTATTAATTTATATT‑CAA‑AAAT‑aaaaaaaaaa                                                                                                                    >  2:10069881/1‑128 (MQ=255)
                aaagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGATTATCTT‑CAC‑AAAT‑aaaaaaaaaa                                                                                                                    >  1:5992012/1‑128 (MQ=255)
                 aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAc                                                                                                                   >  1:3683516/1‑128 (MQ=255)
                   gtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACaa                                                                                                                 <  2:553643/128‑1 (MQ=255)
                    tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATACTCGTGATCTATTT‑ATTTATTTGTATATATT‑CAC‑AAAT‑aaaaaaaaaataca                                                                                                                >  1:684153/1‑124 (MQ=255)
                     agtGAAGTTATTGTAAATATTACATTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATc                                                                                                               <  1:5523249/128‑1 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTT‑TTTTATTATTTTATATT‑AAA‑AAAT‑Aaaaaaaaaaaaaaa                                                                                                               >  1:6583164/1‑126 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATc                                                                                                               >  2:623312/1‑128 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTGAAGATA‑AAC‑AAAT‑aaaaaaatagatcac                                                                                                               >  2:2223776/1‑120 (MQ=37)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTA‑TTTTATTATTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACaaac                                                                                                               >  1:2156756/1‑126 (MQ=255)
                     agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTTTTTATATT‑CAA‑AAAT‑AAAAAAAAAAAAAta                                                                                                               >  1:10007915/1‑127 (MQ=255)
                      gttaaGTTAGTGTAAATAATAGATTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                              <  1:786936/125‑1 (MQ=255)
                      gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                              <  1:2386986/128‑1 (MQ=255)
                      gtGAAGGTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                              <  2:5935695/128‑1 (MQ=255)
                       tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCATGATCTATAT‑TTTTATTAGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATcac                                                                                                             >  1:7291196/1‑126 (MQ=255)
                       tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATAATCTTAATCTATTA‑TTATATTTATTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAAtaaa                                                                                                             >  2:122432/1‑125 (MQ=255)
                        gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATcccc                                                                                                            <  2:10297066/128‑1 (MQ=255)
                         aaGTTAGTTTAAATAATAGAGTTAAGGTAAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATATATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCt                                                                                                           <  1:9738936/128‑1 (MQ=255)
                         aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATcaact                                                                                                           >  2:8923503/1‑124 (MQ=255)
                          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtt                                                                                                          <  2:2866780/128‑1 (MQ=255)
                          aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTTATCTATTT‑TTTTATTTATTTATCTT‑CAA‑AAAT‑Aaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:2902775/1‑121 (MQ=255)
                           ttttgtgtAAATAATATATTTTATTTTAATTTAAATAAAATAAACTTAATAATTATTATAATTTAGATAATCTTTATCTATTT‑TTTTATTTTTTTATCTT‑CACAAAAA‑AAAAAAAAAACAATCCCCtt                                                                                                          <  2:5060401/124‑1 (MQ=255)
                           gTTATTGTAAATAATAGTGTTAAGGTTAATTAAAATAACATAAAATTAATAATTCTTATAATGTATATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAAACAATCCCCtt                                                                                                          <  1:8333708/128‑1 (MQ=255)
                            ttAGTGTAAATAATACAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTGATCTATTT‑TTTTATTTTTTTATCTT‑CAC‑AAAT‑Aaaaaaaaaaaaaaaaaaatta                                                                                                        >  2:9673738/1‑119 (MQ=255)
                             tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATcacattaaa                                                                                                       >  1:8555283/1‑120 (MQ=255)
                             tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATccccataaa                                                                                                       >  1:9142237/1‑123 (MQ=255)
                              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAAATCATCTTGATCTATTT‑ATATATTTTATTATCTT‑CAC‑AAAT‑Aaaaaaaaaaaaaaaaaaataaaa                                                                                                      >  1:4051158/1‑117 (MQ=255)
                              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCACttaaaa                                                                                                      >  2:8601627/1‑124 (MQ=255)
                              aGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAAATTAATAATTCTTAAAATTTAGATAAACTTTATATATAT‑TTTTATTAATATATATT‑AAA‑AAAT‑Aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:3736496/1‑117 (MQ=255)
                               gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCttaaaaa                                                                                                     >  1:8712564/1‑123 (MQ=255)
                                tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATATGTTTATCTT‑CAC‑AAAT‑‑AAAAAAAAACAATCCCCtaaaaaatt                                                                                                   >  1:9895790/1‑120 (MQ=255)
                                   aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCC‑‑ATtaaa‑aaataa                                                                                              >  2:8366056/1‑128 (MQ=255)
                                       aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACAC‑‑ataaaa‑aaataaaaaa                                                                                          >  1:3548506/1‑128 (MQ=255)
                                         taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTT‑ATTTATTTGTTAATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AAATaaaaaaaa                                                                                        >  1:5410243/1‑128 (MQ=255)
                                          agagTTAAGGTTAATTAAAAAACCATAAACTTAATAATTCTTATAATGAAGATCCTCGAGATCTATTT‑TATTATTTATTAATATT‑AAA‑AAAA‑AAAAAAAAAAAAAT‑‑‑CAAATAAA‑AAATaaaaaaaaaa                                                                                      >  1:1914922/1‑128 (MQ=255)
                                             gttaatgttaatTAAAATACCATAAACTATATAATTCATATAAAGTAGAACCTCCTGTTCTATTT‑TTTTATTTTTTTATCTT‑CAC‑AAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaa                                                                                    <  2:9244581/128‑1 (MQ=255)
                                               tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCAAC‑‑TTAAA‑AAATaaaaaaaaaaaaaa                                                                                  >  2:9530532/1‑128 (MQ=255)
                                               tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTATATTTGTTTATATT‑CAC‑AAAT‑AAAAAAAAAAAAAT‑‑CAAAATAAA‑AATTaaaaaaaaaaaaaa                                                                                  >  2:1339105/1‑128 (MQ=255)
                                               tAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTATATAATATTTATCTATTT‑AATTATTTTTATAACTT‑CAC‑AAAT‑AAAAAAAAAAAAAT‑‑ACAATTAAA‑AAATaaaaaaaaaaaaaa                                                                                  >  2:3086467/1‑128 (MQ=255)
                                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTT‑ATTTATTTGTTTATCTT‑CAA‑AAAT‑AAAAAAAAAAAAAAAAAC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaa                                                                                >  1:5620537/1‑128 (MQ=255)
                                                aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTA‑AAC‑AAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaa                                                                                >  1:582078/1‑128 (MQ=255)
                                                 aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑TAAAA‑AAATaaaaaaaaaaaaaaaa                                                                                >  2:9151730/1‑128 (MQ=255)
                                                 aGGTTAATTAAAATAACATAAAATTAATAATTATTATAATTTATATAATATTTATATATTT‑TATTATTTTTTTATCTT‑AAC‑AAAT‑AAAAAAAAAAAAATAAAC‑‑‑AAAA‑AAATtaaaaaaaaaaaaaaaa                                                                               >  2:7651806/1‑128 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTTTTTATCTT‑AAC‑AAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                               >  2:3522998/1‑128 (MQ=255)
                                                  ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                               >  1:8460183/1‑128 (MQ=255)
                                                    tttaataaAAAACAAAAAAATTAAAAATTTTTAAAATTTTTATACACGTGATATTTTT‑TTTTATTTTTTTTTTTT‑AAA‑AAAA‑AAAATAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaa                                                                             <  1:2558752/123‑1 (MQ=255)
                                                     taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAAACACC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaaaaaa                                                                           >  2:9393735/1‑128 (MQ=255)
                                                     taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAA‑AAAAACCAATAAAA‑AAATaaaaaaaaaaaaaaaaaaa                                                                             >  2:8137991/1‑128 (MQ=255)
                                                       attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAAACAAAACCC‑‑TAAAA‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                           >  2:1045482/1‑128 (MQ=255)
                                                       attaaAAAACCATAAAATAAATAATTGTTTTAATTTTTTTCCTCGTGTTTTATTT‑TTTTTTTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaact                                                                          <  1:1102860/128‑3 (MQ=255)
                                                         taaAAAACCAAAAAAATAAAAATTATTATAATTTCTTACATCTTTATATATTT‑TTTTATTTTTTTATATT‑CAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTa                                                                        <  2:6640935/128‑1 (MQ=255)
                                                          aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTT‑TTTTATTTGTTTATATT‑AAC‑AAAT‑AAAAAAAAAACAAAACC‑‑ATAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                       >  1:4833587/1‑124 (MQ=255)
                                                           aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                      >  2:10181293/1‑123 (MQ=255)
                                                             aaaacATAAAATTAATAATTATTATAATTTATATCCTACTGATATATTT‑TTTTTTTTTTTTATATT‑CAA‑AAAA‑AAAAAAAAAAAAATCCC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                    <  1:3191971/124‑1 (MQ=255)
                                                             aTACCATAAAATTAATAATTTTTTTAATTTTTTTACACGTGTTCTATTT‑TTTTATTTGTTTAATTA‑AAA‑AAAA‑AAAAAAAAAAAAATCCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTaaa                                                                      <  2:8843651/128‑1 (MQ=255)
                                                              aaacATAAAATTAAAAAATATTAAAATTTATATCCTTCTTATATATTT‑TTTTATTTTTTTATAAT‑AAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                  <  2:9027733/125‑1 (MQ=255)
                                                               aaaaaaaaaTTAATAATTATTATAATTTATATAATTGTTTTTTATTT‑TTTTTTTTTTTTATTTT‑AAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                  <  2:8210241/123‑1 (MQ=255)
                                                                 cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACaaaaaaaaaaa                                                               >  1:8998627/1‑127 (MQ=255)
                                                                  aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAGAAAAAAAACTAAAAACAAAct                                                              >  1:702812/1‑128 (MQ=255)
                                                                    aaaaTTAATAATTCTTAAAATTTATATACACGTGTTCTATTT‑TTTTAATTGTTTATAAT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                            <  2:9801550/128‑1 (MQ=255)
                                                                        ataataaTTATTAAAAATTATAACCTCGTTATCTATTT‑TATAATTTTTTAATATT‑AAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                         <  2:786194/127‑1 (MQ=255)
                                                                             aatTATTATAATTTTTATCATCTTTATATATTT‑TTTTATTTTTTTATTTTAAAA‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                     <  1:10278294/128‑1 (MQ=255)
                                                                                             atttattttttttattt‑ttttattttttTATTTT‑AAA‑AAAA‑AAAAAAAAAAAAATACAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                    <  1:1463443/116‑1 (MQ=255)
                                                                                              ttcttgttttttATTT‑TTTTTTTTTTTTTTATT‑AAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                   <  1:8077876/117‑1 (MQ=255)
                                                                                              ttatagttttCTTTTT‑TTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                      <  2:7981181/119‑1 (MQ=255)
                                                                                              tactagttataaattt‑ttttatttttttATATT‑AAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                   <  2:323710/116‑1 (MQ=255)
                                                                                               catctttatatattt‑ttttattttttAATATT‑AAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                  <  2:2660990/118‑1 (MQ=255)
                                                                                               aatttttatttATTT‑TTTTTTTTTTTTTTATT‑AAA‑AAAA‑AAAAAAAAAAAAATAACCTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                  <  1:2761945/118‑1 (MQ=255)
                                                                                                atttttattttttt‑tttttttttttTATTAT‑AAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                 <  1:7655871/117‑1 (MQ=255)
                                                                                                  tttttttttttt‑ttttttttttttttttt‑AAA‑AAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                              <  1:10144240/119‑1 (MQ=255)
                                                                                                   gttttattttt‑ttttATTTTTTTTTCTT‑AAA‑AAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                           <  1:3076742/120‑1 (MQ=255)
                                                                                                   gttttatATTT‑TTTTTTTTTTTTAAATT‑AAA‑AAAA‑AAAAAAAAAAAAAACC‑‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                             <  1:1207755/122‑1 (MQ=255)
                                                                                                    ttttCTATTT‑TTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                             <  2:478457/125‑1 (MQ=255)
                                                                                                     ttacTATAT‑TTTTTTTTTTTTAAATA‑AAA‑AAAT‑AAAAAAAAAAAAAGACC‑‑‑TAAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                           <  2:5724194/125‑1 (MQ=255)
                                                                                                      atatattt‑ttttattttttTATAAT‑AAA‑AAAA‑AAAAAAAAAAAAATACCCATAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                             <  2:4453455/125‑1 (MQ=255)
                                                                                                       tCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAACCTAAAAACAAAATATATTTATTAAAATTCACTATATAACAACattttat                          >  1:9618419/1‑128 (MQ=255)
                                                                                                        cTATTTATTTTATTT‑TTAAACTT‑CTC‑ATAA‑AAAAAAAAAAAAATCAC‑‑ATAAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                         <  2:7331291/128‑1 (MQ=255)
                                                                                                          aTTT‑TTTTATTTGTTTATATT‑AAC‑AAAT‑AAAAAAAAAAAAAATACATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                     <  1:9492180/128‑1 (MQ=255)
                                                                                                            tt‑ttttATTTTTTTAAATT‑AAA‑AAAA‑AAAAAAAAAAAAAAACCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                      <  2:7112838/128‑1 (MQ=255)
                                                                                                            tt‑ttttATTTGTTATTATT‑AAA‑AAAA‑AAAAAAAAAACAATCCCCTTT‑‑‑A‑TAATTATAAAATAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                    <  2:4172303/128‑1 (MQ=255)
                                                                                                            at‑ttttATTTTTTTTTATA‑AAT‑AAAT‑ATAAAAAAAAAAAT‑TAAATTAAAA‑AAAAAAAAATAAAAAATAAAAAAAACTAATAACAATCTCTATTTCTTAATATTGCCTTTTATACCACATTTTAttttt                      <  1:8863329/127‑1 (MQ=255)
                                                                                                                tttttttttttttttt‑TAA‑AAAT‑AAAAAAAAAATAATAAAATTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                  <  1:5133544/128‑1 (MQ=255)
                                                                                                                 ttATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                 <  2:8068377/128‑1 (MQ=255)
                                                                                                                   aTTTTTTTTTATT‑AAA‑AAAA‑AAAAAAAAAAAAATAACC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa               <  2:196749/128‑1 (MQ=255)
                                                                                                                     ttttttATATT‑AAA‑AAAA‑AAAAAAAAAAAAAAACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg              <  2:6405277/125‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                    
TTTATAGATTAAAGTAAAAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTT‑TTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAA  >  CP016816/202333‑202589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑