BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,924	0	G	T	32.6%	3248.4 / inf	2239	intergenic (+308/+150)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base G (463/973); new base T (621/72); total (1194/1045)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2278 total aligned reads displayed.

AATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203796‑204051

aatTTTTCATTTAAACTCTTTTGTAATAACTCCTATGTTATATGGTTTTTATTTT‑AATTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑T‑‑‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGt                                                                                                                                 <  1:9459886/128‑1 (MQ=255)

  ttttttATTTAAATCCTTTTTTAAAAAACCATTTTTGTTTTGGTTTTTTTTAT‑AATTATAAACATTAAATAGCTTTTAAATTTTT‑TTTTTTT‑TGG‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAg                                                                                                                                  <  1:1913065/128‑1 (MQ=255)

  tttttAATTTAAATCAATTTTTAAAAAAGCCTTTTTTATTGGTTTTTTTTTAT‑ATTTATCAAAATTACAACTTTTTAAAATTTTT‑TTTTTTA‑GTCT‑‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAg                                                                                                                                  <  2:5922366/128‑1 (MQ=255)

    tttattttAAATGCATTTTTAAAAAATCCTATGTTTTTGGGTTTTTATTTT‑ACTTATCAACATTAAAACCGTTTCAAAGGGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTa                                                                                                                                <  1:6698706/123‑1 (MQ=255)

          ttaaataaaTTTTTAAAAAATTATATTTTATATTCTTTTTTTTAT‑AATTTTAAACATTAAAATGTTTTCAAATTTTT‑TTTTTTT‑TGCTG‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGAtt                                                                                                                           <  2:9493864/120‑1 (MQ=255)

            aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATTAATAttttt                                                                                                                        >  2:216654/1‑126 (MQ=255)

            aaaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAATTAATAttttt                                                                                                                        >  1:1163186/1‑126 (MQ=255)

             aaGCCATTTGTAAAAAAGCCTATGTTCGAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATTATATATAGATTTGGa                                                                                                                       >  1:9188020/1‑128 (MQ=255)

              aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATTAATATTTGTAt                                                                                                                      >  2:8295282/1‑128 (MQ=255)

                ccATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAAGTAATATTTGGAGCaa                                                                                                                   >  2:5297374/1‑128 (MQ=255)

                  aTTTGTAAATAACACTTTTTTCTTTGATTTTTTTTAT‑TCTTATCAACATTACAACTGTTTAAATGTGTA‑TTTTTTA‑GGG‑‑‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAAcc                                                                                                                 <  1:5039324/128‑1 (MQ=255)

                     tttataaaatacTAAGTTTTATGATTTTTATTAT‑AATTATAAAATTTAAAAAGCTTTTAATTTTTA‑TTTTTTA‑TGCTTTTTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAAcc                                                                                                                 <  2:5141631/117‑1 (MQ=255)

                     tGTATAATAGGCTTTGTTCAATGATTTTTATTAT‑AGTTTTCAACATTACCACGCTTTCAAACTGTA‑TTTTTTA‑TGC‑‑‑TTG‑‑‑‑TTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAATAGTAAGATTTGGATCAACCaaaa                                                                                                             <  1:9750463/128‑1 (MQ=255)

                      gTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAAACaa                                                                                                               >  2:8224459/1‑128 (MQ=255)

                       tAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑TAAAAAAAAAATAATATTTTGATCAAACaaaa                                                                                                             >  1:1292981/1‑128 (MQ=255)

                       tAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAAGTAATATTTGGATCAACAaaaa                                                                                                             >  2:10057291/1‑128 (MQ=255)

                       tAAAAAACCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACTCTTTTAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                                                             <  2:1276479/128‑1 (MQ=255)

                        aaaaaaGCCTATTTTTTTGG‑TTTTTTTTATAATTTATAAAAATTAAAACGATTTAAATTTTTT‑TTTTTTT‑GGCT‑‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                            <  1:8901434/128‑1 (MQ=255)

                        aaaaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTTTTTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATTAAGATTTGGATCTAACaaa                                                                                                              >  2:8779953/1‑128 (MQ=255)

                        aaaaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTC‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                                                             >  2:7516450/1‑128 (MQ=255)

                         aaaaaTCATTTGTTTTAGTCTTTTTTTTTT‑AATTATAAAAATTAAAAAGCTTTAAAATTTTT‑TTTTTTA‑TGG‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAc                                                                                                            <  1:3380870/128‑1 (MQ=255)

                         aaaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAAGTAATATTTGTATCAACCaaaaa                                                                                                            >  2:5507048/1‑127 (MQ=255)

                          aaaaGGCAATTTTCTAGGCATTTTATTAT‑ACTTATAAACATTAAAACGCTTTCAAATTGTT‑TTTTTTA‑GGCT‑‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACta                                                                                                          <  2:8574438/128‑1 (MQ=255)

                          aaaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GTC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAAAAAAAATAAAATTTTAAAAAACCAAAAcaa                                                                                                          >  1:10385731/1‑126 (MQ=255)

                           aaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑TAAAAAAAAAAAAAAATTTTGAAAAACCaaaaaaaa                                                                                                         >  1:2741369/1‑124 (MQ=255)

                           aaaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAAAAAAAATAAAATTTTTATAAAACaaaaaaata                                                                                                        >  2:6436895/1‑123 (MQ=255)

                            aaGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATAAAAATTTGTTACAACAAAAAatatat                                                                                                       >  2:3590547/1‑128 (MQ=255)

                               tcTATGTTTTAGGCTTTTTATTAT‑TTTTAGCATAATTATATAGGTTTAAATTTTTA‑TTTTTTT‑TGT‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGTTTTGGATCAACCAAAACTATATCa                                                                                                     <  2:9218012/127‑1 (MQ=255)

                                cTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AATAATAAAAGTAATTTTTGGAACAACACAAAATTTATCaa                                                                                                    >  1:8313506/1‑128 (MQ=255)

                                cTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTAAAAGGCTTTCTAAGTGTA‑TTTTCTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTTTATTTTTTT‑AAAATTAAAAATAAAAGATGGTAGAACCATAAatatataa                                                                                                     >  2:6875376/1‑126 (MQ=255)

                                  attttttAGGTTTTTTTTTAT‑AATTATTAAAATTAAAATTTTTTAAATTTTTA‑TTTTTTA‑GGCTT‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                                   <  2:3778786/122‑1 (MQ=255)

                                    gTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTTAGTTTTGGATCAACCAACAGGTTATCaaaaaaa                                                                                               >  2:7339249/1‑128 (MQ=255)

                                    aacatAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAAGTAATATTTGGATAAAACAAAACTTAATAaaaaaa                                                                                                >  2:8906553/5‑128 (MQ=255)

                                      ttttttgattttatttt‑aATTATAAAAATTAAAACGCTTTAAAATTGTA‑TTTTTTATGGT‑‑‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAt                                                                                              <  1:8040891/120‑1 (MQ=255)

                                      tCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAAGTAAAATTTGTGTCAAACAAAACTATTTAAAAAAAAtt                                                                                             >  2:1032077/1‑128 (MQ=255)

                                       ttttgttttttATTAT‑ACTTATCAAAATTAAAAAGTTTTAAAATTGTT‑TTTTTTT‑TGG‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAtt                                                                                             <  1:8179204/122‑1 (MQ=255)

                                             attttATTAT‑AATTATTAAAATTAAAAAGCTTTATAATTTTATTTTTTTT‑GTT‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                       <  1:4482658/127‑1 (MQ=255)

                                              ttttATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAATATAAAATTTGGAAAAAAAAAAAATATAAAAAAAAAATAaaaaaa                                                                                       >  2:1445975/1‑128 (MQ=255)

                                                ttattaT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTTCTTTT‑‑TTTTTTTAAAAAAAAAAATTAAAATTTGTAACACCCAAAAAATAAACAAAAAAATAaaaaaaaa                                                                                     >  1:1071261/1‑128 (MQ=255)

                                                   ttat‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAAGTATTATTTGGAGGAACCAAAACTATATAAAAAAAATTAAAAAAAAtatg                                                                                 >  1:4218150/1‑126 (MQ=255)

                                                    tat‑aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑TAAAATAAATTTAATATTTTGTTAAAAAAAAAATATAAAAAAAAAATTAAAAAAAAtattt                                                                                >  1:6086493/1‑128 (MQ=255)

                                                     at‑aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATTAAAATTTTTTAAAACCAAAAATAAATAAAAAAAAATaaaacaaaaatat                                                                                >  1:3951246/1‑123 (MQ=255)

                                                     at‑aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAATTAAGATTTGGATAAAAAAAAACTATTTAAAAAAAATTAAAAAAAAtagtt                                                                                >  2:4164548/1‑128 (MQ=255)

                                                     at‑aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAATATTTTGAAAAACCAAAACTATATCAAAAAAATTAAAAAAAAaagtgtt                                                                              >  1:10133242/1‑125 (MQ=255)

                                                        aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAAAAAAATTAATATTTTGATCAACAATAAATTTATAAAAAAAATTAATAAAAAaagtaata                                                                             >  2:3968313/1‑124 (MQ=255)

                                                           tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTT‑T‑AAAAATAAAATTAAGATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTA‑TTTTAg                                                                       >  2:4894221/1‑128 (MQ=255)

                                                           tATCAACATAACAACGCTTTAAATTTGTA‑TTTTTTA‑GGCT‑‑TTT‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTg                                                                         <  1:904930/128‑1 (MQ=255)

                                                                     acaaatatttAAAATTGTT‑TTTTTTT‑GTT‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAAt                                                               <  2:976172/121‑1 (MQ=255)

                                                                      cAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAAGTAAGATTTTGTTCAACCAAAAATATAACAAAAAAATTAAAAAAAATATTTTA‑GTTGAGTTTCaaaac                                                              >  2:1152785/1‑126 (MQ=255)

                                                                       aaCGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAAATAATATTTTGATAAACCAAAACTTAATAAAAAAAATAAAAAAAAAAATTTTA‑TTTTATTTTCaaaaaa                                                             >  2:2694913/1‑125 (MQ=255)

                                                                        aCGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTTTTTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAATTAATATTTGGTTCAACAAAAACTTAATAAAAAAAATTAAAAAAAAAATATTA‑TTTGAAttaaaaaaa                                                              >  2:6708497/1‑121 (MQ=255)

                                                                        aCGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATTAATATTTTGATAAACAAAAACTATATCAAAAAAATTAAAAAAAAAATTTTA‑GTTGATTTTAAAATATg                                                            >  1:9905/1‑128 (MQ=255)

                                                                        aCGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAAGTTATATTTTGATAAACCAAAACTATATAAAAAAAATTAAAAAAAAATGTTTA‑TTTTATTTTAAAATCTg                                                            >  2:8676949/1‑128 (MQ=255)

                                                                             ttCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATTAAAATTTTGTAAAACCAAAAAAAAATAAAAAAAAATAAAAAAAAAAATTTA‑TTTTATTTTAAAATATGCata                                                        >  1:10264605/1‑128 (MQ=255)

                                                                              tCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAATTTATAAAAAAAATTAAAAAAAATTTTTTT‑TTTTAGTTTCAAATATGCatata                                                      >  2:1639931/1‑128 (MQ=255)

                                                                                     gtA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAATTAAGATTTGGATAAACCAAAAAAATATAAAAAAAAATAAAAAAAATAGTTTA‑TTTTAGTTTAAACTATTAATATATATTAc                                                >  1:9320241/1‑128 (MQ=255)

                                                                                     gtA‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAAAAAAAATAAGTTTTTGAAAAACCAAAAATATATAAAAAAAATAAAAAAAAATAGTTTT‑TTTGTGTTTAAAATAGTCatataataaaa                                                >  2:3406595/1‑122 (MQ=255)

                                                                                     gtA‑TTTTTTA‑GGC‑‑‑TTGT‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAAAAAAATTAATATTTTGTTCAACCAAAAATTATTAAAAAAAATTAAAAAAAATATTTTA‑TTTGAGTTTCAAATGTGAatatattataaa                                               >  2:960251/1‑122 (MQ=255)

                                                                                       a‑TTTTTTA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAATTAAAATTTTAAAAAACAAAAAAAATATAAAAAAAATAAAAAAAAATATTTTA‑TTTTATTTAAAAATATGAatataatttaaaa                                              >  2:438/1‑120 (MQ=255)

                                                                                         ttttttA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAATAAAAGTAAGATTTGGTTCAACCAAAACTATTAAAAAAAAATTAAAAAAAATATTTTA‑TTTTATTTTAAAATATGCATATATAGTACAAAgg                                           >  2:8085139/1‑128 (MQ=255)

                                                                                           ttttA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTTT‑AAAAAAAAAAGTAAGATTTGGATAAACCAAAAATATAACAAAAAATTTAAAAAAAAAATTTTT‑TTTTTGTTTAAAATTTGATTATATATTACAAAgc                                           >  1:1599423/1‑127 (MQ=255)

                                                                                           ttttA‑GGC‑‑‑TTGTT‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAATTAATATTTGGAACAACCAAAACTAAAACAAAAAAAATAAAAAAAAAAGTTTATGTTTA‑TTTCAAATGTGAAAATATAGTAaaaatt                                           >  1:2575164/1‑126 (MQ=255)

                                                                                             ttA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTT‑T‑AAAAATAAAAGTAATATTTGGATCAACCAAAACTATTTCAAAAAAATTAAAAAAAATATTTTA‑GTTGAGTTTCAAATATGAATTTATAGTACAAAGGAAatt                                      >  2:4624877/1‑128 (MQ=255)

                                                                                                  tttttttttttttttttt‑tttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa                                         <  2:2347231/117‑1 (MQ=255)

                                                                                                     ttttttttttttttt‑tttt‑‑tttttGT‑TAAAATAATAGTAAGATTTTGATTAAAAAAATCTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                      <  1:6382742/120‑1 (MQ=255)

                                                                                                      tttttttttttttt‑tttt‑‑ttttttt‑TAATATATTAGTAAGATTTTGATATAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                     <  2:793783/121‑1 (MQ=255)

                                                                                                      tttttttttttttt‑tttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                     <  1:7271364/121‑1 (MQ=255)

                                                                                                      tttttgtttttttt‑tttt‑‑ttttttt‑AAAAATAAAAGTAAGTTTTGGATCAACAAAATCTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                     <  1:6882732/121‑1 (MQ=255)

                                                                                                       gtttttttttttt‑tttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                    <  2:2495006/122‑1 (MQ=255)

                                                                                                          gttttttttt‑tttt‑‑ttttttt‑AAAAATAAAAGAAAAATTTGGATAAACCAAAAATATTTAAAAAAAATTAAAAAAAATTTTTTA‑TTTGATTTTAAAATATTAATAAATATTAAAAAGTAATATAAGAt                                 >  2:2602788/4‑128 (MQ=255)

                                                                                                           gtttttttt‑tttt‑‑ttttttt‑AAAAATAAAATTAAAATTTTGATAAACCAAAACATAAAAAAAAAAATTAAAAAAAATTATTTA‑TTTGAGTTTAAAAAAATCATAAATATTAAAAAGAAATTTaaatat                                >  2:9076881/3‑123 (MQ=255)

                                                                                                            tttttttt‑tttt‑‑ttttttt‑AAAAATAAAATTAATTTTTGGTTAAACCAAAAATTTATAAAAAAAATTAAAAAAAATATTTTT‑TTTTATTTTCAAATCTGCATATATAGTTAAAAGGAATTTAttaaaa                               >  2:2963091/2‑123 (MQ=255)

                                                                                                              tttttt‑tttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                             <  1:788724/128‑1 (MQ=255)

                                                                                                               ttttt‑tttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                            <  1:8762750/128‑1 (MQ=255)

                                                                                                                 ttt‑tttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  1:10009967/128‑1 (MQ=255)

                                                                                                                 ttt‑tttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACAAAAACTATATAAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                          <  1:3175002/128‑1 (MQ=255)

                                                                                                                      ttt‑‑tttttGT‑TAAAATAAATTTAAGATTTGGATAAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                      <  1:5895135/128‑1 (MQ=255)

                                                                                                                      ttt‑‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                      <  2:7824669/128‑1 (MQ=255)

                                                                                                                              ttGT‑TAAAATAAAATTAATATTTTGATTAACCAAAATTATATAAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  1:476459/128‑1 (MQ=255)

                                                                                                                              ttGT‑AAATATAAAAGTTAGATTTGGTTCAAACAAAAATATATAATAAATATTATAAATATTAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                <  1:2202074/128‑1 (MQ=255)

                                                                                                                              ttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                <  1:8641471/128‑2 (MQ=255)

                                                                                                                               tGT‑ATAAATTAAAGTAAGTTTTGGATCAACCAAAACTATATCTATATAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt               <  2:707480/128‑1 (MQ=255)

                                                                                                                                 t‑AAAAATTAAAGTAAGATTTGGATAAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg             <  1:2370361/128‑1 (MQ=255)

                                                                                                                                 t‑AAAAATAAATGTAAGATTTTGATCAACAAAAAATATATAATAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg             <  2:10183078/128‑1 (MQ=255)

                                                                                                                                 t‑AAAAATAAAATTAAGATTTGGATCAATCAAAACTATATCAAAAAAATTAAAAAAATTAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg             <  2:9884892/128‑1 (MQ=255)

                                                                                                                                  tatttaTAAAAGTAATATTTGGATGAACAATAACTATATCTAAATAATTTAAAAATTTATTTTA‑GTTTAGTTTAATATATTAATATATAGTAAAAATGAATTTATGATAGAAAAAAATGGATTATTTg             <  2:1937807/123‑1 (MQ=255)

                                                                                                                                   aaaaaTAAAAGTAAGATTTGGATCAAACAAAACTATTTCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa            <  1:5215219/128‑1 (MQ=255)

                                                                                                                                    aaaaTAAAAGTAAGATTTGGATCATCAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt           <  2:3206903/128‑1 (MQ=255)

                                                                                                                                        tAAAAGTAATATTTTGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       <  1:3664836/128‑1 (MQ=255)

                                                                                                                                        tAAAAGTAAGATTTGTATAAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       <  1:5605107/128‑1 (MQ=255)

                                                                                                                                        tAAAAGTAAGATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc       <  2:1054896/128‑1 (MQ=255)

                                                                                                                                         aataGTAAGATTTTGATCTAACAAAACTATATAAAAAAAATTAAATAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  2:9363779/125‑1 (MQ=255)

                                                                                                                                         aaaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGATTTTCAAATCTGCATATATATTACAAAGGAATTTATGATAGAAAAAAATTAATTAATTTATAATcc      >  1:298442/1‑128 (MQ=255)

                                                                                                                                         aaaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      >  2:5697427/1‑128 (MQ=255)

                                                                                                                                         aaaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc      <  1:8562337/128‑1 (MQ=255)

                                                                                                                                          aaaGTAAGATTTGGACCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTCATattaca     >  2:8440525/1‑123 (MQ=255)

                                                                                                                                           aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGTATTAGTTGATAATCCAt    >  1:5373924/1‑128 (MQ=255)

                                                                                                                                           aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    >  2:6220544/1‑128 (MQ=255)

                                                                                                                                           aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt    <  1:9578555/128‑1 (MQ=255)

                                                                                                                                             gTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt  >  1:7645003/1‑128 (MQ=255)

AATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTAT‑ACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GGC‑‑‑TTG‑‑‑TTTTTTT‑TTTT‑‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTA‑GTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTT  >  CP016816/203796‑204051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`