BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,486	0	T	.	60.2%	272.7 / inf	580	intergenic (+264/‑411)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (44/146); new base . (138/149); total (237/343)
Fisher's exact test for biased strand distribution p-value = 3.38e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.03e-05

Only 100 of 640 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202358‑202613

aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAACCCCtt                                                                                                                                       >  1:913775/1‑128 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCtta                                                                                                                                      >  1:824797/1‑127 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAAATCTTATAAAGTAGATCATCGTGATCT‑ATTTATTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCAtta                                                                                                                                      >  1:4105059/1‑127 (MQ=255)

   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                                     >  1:6816203/1‑126 (MQ=255)

   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCCttaaa                                                                                                                                    >  1:7736444/1‑125 (MQ=255)

       tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaaat                                                                                                                                 >  2:6897235/1‑122 (MQ=255)

           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACACttaaaaattaaa                                                                                                                             >  2:6284920/1‑118 (MQ=255)

            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt‑‑‑aa‑‑a‑aataaaaa                                                                                                                      >  1:6959261/1‑128 (MQ=255)

            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑Ttaaa‑‑a‑attaaaa                                                                                                                       >  1:7534573/1‑128 (MQ=255)

            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑Ttaaa‑‑a‑attaaaa                                                                                                                       >  1:6582581/1‑128 (MQ=255)

            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAAAAAACCC‑‑‑ataaa‑‑a‑aataaaaa                                                                                                                      >  2:6336433/1‑128 (MQ=255)

             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt‑‑‑aa‑‑a‑aataaaaaa                                                                                                                     >  1:6737112/1‑128 (MQ=255)

             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ttaaa‑‑a‑attaaaaa                                                                                                                      >  1:6367838/1‑128 (MQ=255)

               ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAA‑‑A‑AATtaaaaaaa                                                                                                                   >  2:6581813/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTTATCT‑ATTTTTTTATTTGATTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑‑TAAA‑‑A‑AATtaaaaaaaa                                                                                                                  >  1:1944196/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGCTCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCATTAAaaat‑a‑aataaaaa                                                                                                                      >  1:7113036/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCT‑ATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAA‑‑A‑AATtaaaaaaaa                                                                                                                  >  1:2833094/1‑128 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATACC‑‑‑ATAAA‑‑A‑AATaaaaaaaaaaaaaa                                                                                                             >  1:4923366/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCC‑‑ATTAAA‑‑A‑ATTaaaaaaaaaaaaaa                                                                                                             >  2:6972569/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaa                                                                                                            >  1:2380821/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATACAATT‑‑‑AA‑‑A‑AATaaaaaaaaaaaaaaa                                                                                                            >  2:7728510/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaa                                                                                                            >  1:6273252/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaa                                                                                                            >  2:7350218/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGATCCTCGTGATCT‑ATTTTTTAATTTTATTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAAATAAA‑‑A‑ATTaaaaaaaaaaaaaaa                                                                                                            >  1:3038351/1‑128 (MQ=255)

                        atgTTAATTAAAATAACAAAAAATTAATAATTAATAAAATTTAAAACAAATTTTAAT‑ATTTTTTTATTTTTTTATAATAACAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaa                                                                                                           <  2:1813570/126‑1 (MQ=255)

                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaa                                                                                                           >  1:5983295/1‑128 (MQ=255)

                         tgTTAATTAAAATTAAATAAAATTAATAAATAATAAAATTTATATCAACGTTATAT‑ATTTTTTTAATTTTTTAAATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                                          <  2:5458135/127‑1 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑‑ACAAATAAA‑‑A‑AATaaaaaaaaaaaaaaaaaa                                                                                                         >  1:4537884/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑ttaaa‑‑a‑attaaaaactcaccagttga                                                                                                          >  1:6762385/1‑116 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                                          >  2:6118701/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaa                                                                                                          >  1:2013152/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATCCAC‑‑‑TAAA‑‑A‑AATtaaaaaaaaaaaaaaaaa                                                                                                         >  1:7047886/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑A‑TTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaa                                                                                                         >  1:1117377/1‑128 (MQ=255)

                           tttattaaAAAAAAATAATATTAATAATTATAATAATTTATATTATCTTTATATAATTTTTTTATTT‑TTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaa                                                                                                        <  2:502779/125‑1 (MQ=255)

                           ttaattaaAATAAAATAAAAATAAAAATTATTAAAATTTATAACCTCTTTATAT‑ATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaa                                                                                                        <  2:905582/128‑1 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTAATCT‑ATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAAAAAAAAAC‑‑ATAAAA‑‑A‑AATaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:5262364/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAA‑‑A‑AATtaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:6657571/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTAAATTCAAAAAT‑AAAAAAAAAACAAACCCATT‑‑‑AA‑‑A‑AATaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:7393906/1‑128 (MQ=255)

                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:6038970/1‑128 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑CTTaaaaaaaaaaaaaacaaaaaaa                                                                                                     >  1:7213937/1‑127 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACAAATTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:2534661/1‑127 (MQ=255)

                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:6609185/1‑127 (MQ=255)

                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:6043154/1‑126 (MQ=255)

                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAA‑‑ACCAAATAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaaacaa                                                                                                    >  1:3885355/1‑125 (MQ=255)

                                taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTAATCTTCACAAAT‑AAAAAAAAAAAAAACCC‑‑AATAAA‑‑A‑ATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  1:2573906/1‑125 (MQ=255)

                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAATAACAAT‑CACATTAAAA‑‑A‑TTTAAAAAAAAAAaaaataaaaaaataaa                                                                                                 >  2:7119716/1‑128 (MQ=255)

                                        caaaaaaTTTATAATTATTATAAATTACATCACCGTGATAT‑ATTTTTTTAATTGTTAATATTAACAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAaaaca‑aa                                                                                          <  2:7071706/125‑1 (MQ=255)

                                         aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTATTAATATTATTATCTTAACAAAT‑AAAAAAAAATCAAT‑ACCATTAAAA‑‑A‑ATTAATAAAAAAAAAAAAATAAAAAAAAaaaca‑aa                                                                                          >  1:3712165/1‑128 (MQ=255)

                                         aTAAAATTAATAATTTTTATATTTTATTTCCCAGTG‑TTT‑ATTTTTTTTTTTTTTTTTTTTTAAAAAA‑AAAAAAAAAAAAAAACCC‑CTTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAaaaca‑aac                                                                                         <  1:1771665/128‑1 (MQ=255)

                                           aaaCTTAAAAATTTTTATAATTTATATCCGAGTTATCT‑ATTTTTTTATTTGTTTATTTTCACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AActct                                                                                      <  2:3949500/128‑1 (MQ=255)

                                               ttAATAATTATTTTAATTTATATAATCGTTAATT‑ATTTTTTTATTTTTTTATATAAAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAA‑‑T‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTa                                                                                     <  2:6534494/128‑1 (MQ=255)

                                                taataaATATTAAAATTTATATACTCTGTATTT‑ATTTTTTTATTTGTTTATATTAACAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTc                                                                                 <  2:4736226/128‑1 (MQ=255)

                                                    aatTCTTATAATGTAGATCCTCTTTTTAT‑ATTTTTTTATTTTTTTATATTCACAAAA‑AAAAAAAAAACAATCCCC‑TTAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCtt                                                                               <  2:1073450/128‑1 (MQ=255)

                                                     attattTTAATTTAGATACTATTGATAT‑ATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAAATCCCCTTAAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCtt                                                                               <  2:7221531/128‑1 (MQ=255)

                                                     atTTTTATAATTTATATTCTTGTGATAT‑TTTTTTTTTTTTGTTTATTTTAAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTa‑aa                                                                           <  2:274031/128‑1 (MQ=255)

                                                        tttATAAATTAGATCCACGGGATTT‑ATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAAAAAAAAAAAATCCCCTTAAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTa‑aa                                                                           <  1:5899913/127‑1 (MQ=255)

                                                          tataATTTATATCATCTTTATCT‑ATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑‑T‑TAAAAAAAATAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAAt                                                                         <  2:763618/128‑1 (MQ=255)

                                                               ttttcttCCTCTTTATAT‑ATTTTTTTATTTTTTTTTATTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCtat                                                                  <  1:7806895/122‑1 (MQ=255)

                                                                  atatacTCGTGATTT‑ATTTTTTTATTTGTTTATATTAACAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATtata                                                              <  2:2704820/123‑1 (MQ=255)

                                                                     tactagttttCT‑ATTTTTTTATTTGTTTTTATTAACAAAT‑AAAAAAAAAAAAATACCCTTT‑‑‑A‑‑A‑AAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACcac                                                          <  2:4199617/119‑1 (MQ=255)

                                                                     acaaatttatat‑atttttttattttttTAACAT‑AAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATAcc                                                            <  2:1661852/117‑1 (MQ=255)

                                                                      acTCGTGATAT‑TTTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACcac                                                          <  2:6737921/127‑1 (MQ=255)

                                                                        attatgttattttttttttttttttTAATATAAAAAAA‑AAAAAAAAAAAAAAACACCTAAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATAcc                                                            <  1:5175203/117‑1 (MQ=255)

                                                                         tatttaat‑atttttttattttttTATATAAAAAAAT‑AAAAAAAAAAAAAAACCCATAAAAAT‑T‑AAAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACca                                                           <  2:3200045/121‑1 (MQ=255)

                                                                          tttatat‑ATTTTATTAATATTTTTTATTTAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattt                                                      <  2:1478976/122‑1 (MQ=255)

                                                                           ttattt‑atttttttattttttTATATTAAAAAAT‑AAAAAAAAAAAAATACC‑‑TTT‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACatttt                                                     <  2:2374523/123‑1 (MQ=255)

                                                                           ttaTCT‑ATTTTTTTATTTTTTTATAATAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACatttt                                                     <  2:5606151/126‑1 (MQ=255)

                                                                             ttat‑atttttttattttttTAAAATCAAAAAA‑AAAAAAAAAAAAAAAACC‑CTTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACatttt                                                     <  2:7452201/125‑1 (MQ=255)

                                                                              aaaattttttttATTT‑TTTATATTAAAAAAA‑AAAAAAAAAAAAAAACCCATAAAAA‑‑ATAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattt                                                      <  2:4404807/123‑1 (MQ=255)

                                                                                tttttttttttttttttTATATAAAAAAAA‑AAAAAAAAAAAAATCC‑‑‑TTTAAA‑‑A‑TAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattttatttt                                                <  1:166704/125‑1 (MQ=255)

                                                                                t‑ATTTTTTTTTTTTTATTAATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑TTAAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattttatt                                                  <  1:4297072/128‑1 (MQ=255)

                                                                                 atttttttttttttttTATTTTAAAAAAA‑AAAAAAAAAAAAAACCC‑‑‑TTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattttatttt                                                <  2:6432478/126‑1 (MQ=255)

                                                                                 aaattttttattttttaTTAATAAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattttatttt                                                <  1:7283701/125‑1 (MQ=255)

                                                                                  ttttttttATTT‑TTTATTATAAAAAAT‑AAAAAAAAAAAAAATAAACA‑TAAA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattttatttt                                                <  1:6397658/127‑1 (MQ=255)

                                                                                  tattttttAATTTTTTATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattttatttt                                                <  2:7280597/126‑1 (MQ=255)

                                                                                   ttttttttttttttTATTTTAAAAAAA‑AAAAAAAAAAAAATACCC‑TATAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACattttatttt                                                <  2:2634048/128‑1 (MQ=255)

                                                                                   tttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTAttttt                                               <  2:7858630/128‑1 (MQ=255)

                                                                                   tttttttatttttttaACATAAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTAttttt                                               <  2:680555/128‑1 (MQ=255)

                                                                                     tttttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAAA‑AAAACTATTAAAAA‑AAATTAAATATTATAACA‑AAATTATTTTTaaaaa                                          >  2:2904215/1‑127 (MQ=255)

                                                                                      ttttttttttttATTTTTAAAAAT‑AAAAAAAAAAAAATTCCC‑‑TTAAT‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTaaa                                            <  2:3794508/128‑1 (MQ=255)

                                                                                      ttttATTTTTTTAATTTAAAAAAT‑AAAAAAAAATAAAATCAATTTT‑AA‑‑A‑ATTTAAAAAAAAAAAAAAATAAAACTAAAATCA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTaa                                             <  2:5211245/128‑1 (MQ=255)

                                                                                       tttATTTGTTTATTTAAAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTaaaa                                           <  2:82962/128‑1 (MQ=255)

                                                                                         ttttttttTATCTTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATa                                         <  1:7165352/126‑1 (MQ=255)

                                                                                         tATTTTTTTAAATACAAAAAA‑AAAAAAAAAACAAACCAC‑‑TTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATa                                         <  1:5731954/128‑1 (MQ=255)

                                                                                           ttttttTATATTAACAAAA‑ATAAAAAAAACAATCACC‑‑TTAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                       <  2:1934247/128‑1 (MQ=255)

                                                                                           ttttttTATATTAAAAAAA‑AAAAAAAAAAAAATACC‑‑AATAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                       <  2:4092905/128‑1 (MQ=255)

                                                                                           tttGTTTTTTTTAAAAAAT‑AAAAAAAAAAAAATACC‑‑ATTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                       <  1:7680328/128‑1 (MQ=255)

                                                                                           tttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑TTAAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAAATAAAAAAA‑AACT‑AAATTAATA‑AAAATACCTATTTTACAAAAATTTTTTTTTaaaaataa                                       >  1:7643503/1‑124 (MQ=255)

                                                                                              ttttATATTAAAAAAT‑AAAAAAAAAAAAATACCCTTAAAAATTA‑AAAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                        <  2:3530729/127‑1 (MQ=255)

                                                                                              ttttATATTAAAAAAA‑AAAAAAAAAACAAAACCC‑‑TTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat‑a                                   <  2:7559740/127‑1 (MQ=255)

                                                                                               tttATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑Att                                 <  2:2181040/128‑1 (MQ=255)

                                                                                                  ataataaaaaaT‑AAAAAAAAAAAAATACCATTAAAAA‑‑T‑TAAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑Att                                 <  2:1287659/120‑1 (MQ=255)

                                                                                                   tattaaaaaaT‑AAAAAAAAAAAAAAACAC‑‑TTAAA‑‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACa                             <  2:4941739/121‑1 (MQ=255)

                                                                                                     aaaaaaaaa‑aaaaaaaaaaaaATAACC‑ATAAAA‑‑A‑ATAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACa                             <  2:2012265/123‑1 (MQ=255)

                                                                                                        aaaaaT‑AAAAAAAAAAAAAT‑AAAATTTAAA‑‑A‑TTAAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACataa                          <  2:2845606/126‑1 (MQ=255)

                                                                                                          aaaa‑aaaaaaaaaaCAAAACCCTT‑‑‑AA‑‑A‑AATTAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACATAatata                      <  2:5951839/128‑1 (MQ=255)

                                                                                                              ataaaaaaaaaaaaTAACCTTT‑‑AA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACATAatatata                    <  2:5324760/126‑1 (MQ=255)

                                                                                                                   aaaaacCAATCCCC‑‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAA‑‑AAAAACACAACACATTTTAATATAAATAACGTATTAAACCACATTTTTTTTTTAAAA‑AAGATAATTCACAAAatttatttaata               >  1:6554112/1‑122 (MQ=255)

                                                                                                                     aaaaCAATCCCC‑‑TTAAA‑‑A‑ATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAA‑AAATGTATTTATTA‑AAATTCACTATTTAAAAAAATTTTTTTTTTAAAATAATTT‑TTTAAAATAaaatataaaaaatat            >  1:614096/1‑120 (MQ=255)

                                                                                                                         aaaaaaccctttAAA‑‑A‑AAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACATAATATATATCTAatatat          <  2:585400/119‑1 (MQ=255)

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCT‑ATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑A‑AATAAAAAAAAAAAAAAAAAAAAACTAAAAACA‑AACTCTATTTCTTA‑AAATTCCCTATTATACCACATTTTATTTTTAAAATAAGAT‑ATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202358‑202613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`