Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA33.7% 3112.2 / inf 1867intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (565/637);  new base A (476/136);  total (1057/810)
Fisher's exact test for biased strand distribution p-value = 1.62e-37
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1938 total aligned reads displayed.

GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079
                                                                                                                                            |                                                                                                                               
  cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGTT‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑TAAATT‑TATATTTGGTTCCACCAAAAATATA‑A‑Ca                                                                                                                                >  1:6974947/1‑128 (MQ=255)
  cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAAAGA‑AATATTTGTATAAACCAAAAATATA‑T‑aaa                                                                                                                               >  2:6068971/1‑128 (MQ=255)
     tgttgtttgCTTTTTTTTATAATTATAAAAATTAAAAAGTTTTTAAAGTGTATTTTTTT‑GTG‑TGGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑Caaaaa                                                                                                                            <  1:6867529/120‑1 (MQ=255)
      gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAAATT‑AATTTTTGGATCAACCAAAAATTTA‑T‑Aaaaaaa                                                                                                                           >  1:6390250/1‑128 (MQ=255)
      aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTAATTTTTA‑GGA‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑TAAAAT‑AAAAGT‑AAATTTTGGATCAACCCAATCAATT‑A‑Caaaaaaa                                                                                                                          >  1:5272648/5‑128 (MQ=255)
       acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTTA‑TTTTTGT‑‑AAAAAA‑AAAATT‑TATATTTTGTAAAACAAAAAATATA‑T‑Ctaaaaaa                                                                                                                          >  2:1641827/4‑128 (MQ=255)
        catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑TAAAATAAAAAGT‑AATATTTGTATAAACAAAAAATATA‑T‑Aaaaaaat                                                                                                                          >  2:4886967/3‑127 (MQ=255)
         cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAATTT‑AATATTTGGATCAACCAAAAATATA‑T‑CAAAAAAAtt                                                                                                                        >  1:5725668/1‑128 (MQ=255)
         cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTTTTAAAAAAT‑AAAAGT‑AAGAATTTGATCAACAAAAAATATA‑T‑AAAAAAAAt                                                                                                                         >  2:1447882/1‑128 (MQ=255)
         cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTATTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTTA‑TTTTTTG‑‑AAAAAT‑AAAATT‑ATCAATTTGATCTACCAAAACTATA‑T‑Aaaaaaatat                                                                                                                        >  2:4164938/1‑125 (MQ=255)
          tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAATT‑AAGATTTGGATCAAACTAAAATATA‑T‑AAATAAAATTaa                                                                                                                      >  1:6205359/1‑128 (MQ=255)
                ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAAATT‑AAATTTTGGTGAAACAAAAAATTTT‑T‑AAAAAAAATTaaaaaaa                                                                                                                 >  2:3217367/1‑128 (MQ=255)
                 tttATTATATTTATCAACATTACAACGCTTTAAAAGTTTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTTTATTTTTTT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTaaaaaaa                                                                                                                 <  2:5876858/128‑1 (MQ=255)
                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGTTTTTTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAA‑AAAAAT‑ATCATTTATAACAACAAAAAATTAA‑T‑AAAAAAAATAAAAAAAAAt                                                                                                               >  2:2841994/1‑128 (MQ=255)
                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGTT‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAAAAT‑AAAATTTTTATAAAAAAAAAATATT‑T‑AAAAAAAATTAAAAAAAAtat                                                                                                             >  2:5749392/1‑127 (MQ=255)
                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAAAGT‑AAAATTTTGAAAAACAAAAAAAATA‑T‑AAAAAAATTTAAAAAAAAtagt                                                                                                            >  2:2540009/1‑128 (MQ=255)
                     ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGA‑AAAATTTGTATAAACCAAAAATATA‑A‑AAAAAAAATTAAAAAAAAtatt                                                                                                            >  2:3743637/1‑126 (MQ=255)
                      tataCTTATAAACATTATAACGCTTTAAATGTTTTTTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAAtagtt                                                                                                           <  1:7434018/128‑1 (MQ=255)
                       ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAA‑AAAATT‑AAAATTTTGATAAAACAAAAAAATA‑T‑AAAAAAAATTaaaaaaaaatattt                                                                                                          >  1:4121550/1‑122 (MQ=255)
                         actattCAACAATACAACGTTTTAAAATTGTTTTTTTAT‑GGCTTTT‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAAtagtttag                                                                                                        <  1:6290224/123‑1 (MQ=255)
                           ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAATT‑AATATTTGGATAAACCAAAAATTTA‑T‑AAAAAAAATTAAAAAAAAaattttagtt                                                                                                      >  1:7133200/1‑128 (MQ=255)
                           ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑TAAAAT‑AAAAATAAAAATTTTGTAAAAACAAAA‑TATA‑TAAAAAAAAATTaaaaaaaaatttttattt                                                                                                      >  2:5075944/1‑118 (MQ=255)
                            tttCAAAATTTCAACTCTTTAAAATTTTATTTTTTA‑TGA‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTg                                                                                                     <  1:6095195/126‑1 (MQ=255)
                             attaaaaTTAAAAAGCTTTAAAATTTTTTTTTTTT‑TGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGa                                                                                                    <  2:6761107/122‑1 (MQ=255)
                             aTCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAA‑AAAATT‑AATATTTTTAAAAACAAAAAATAAA‑T‑AAAAAAAAATAAAAAAAAaattttatttta                                                                                                    >  1:2301874/1‑126 (MQ=255)
                               cAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑TAAAAT‑AAAATA‑AAAATTTTGAGACACCAAAAC‑ATATT‑AAAAAAAATTAAAAAAAAtattttatttatgt                                                                                                  >  2:643159/1‑124 (MQ=255)
                                   aTTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAA‑AAAAGT‑AAGATTTGGATAAACCAAAAATTTA‑T‑AAAAAAAATTAAAAAAAATTTTTTAGTTGAGTTTCa                                                                                              >  2:1790049/1‑128 (MQ=255)
                                    ttaataatgtttAAAAGTTTTTTTTTTATGTT‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AATAAT‑AAAAGT‑AAGATTTGGATCAAACAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCaa                                                                                             <  1:3965842/119‑1 (MQ=255)
                                        aaCGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGTT‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAA‑AAAAGT‑AAGATTTTGAACACCCAAAAATAAA‑T‑AAAAAAAATTTAAAAAAAATTTTTTTTTTATTTTCAAAta                                                                                          >  1:783054/1‑127 (MQ=255)
                                          cGCTTTCAAAGTGTATTTTTTA‑GGC‑TTGTT‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAAATTTGGATCAAACAAAACTTAA‑T‑AAAAAAAATTAAAAAAAATAATTTAATTTAATTTaaaaaaag                                                                                        >  2:2695632/1‑124 (MQ=255)
                                           gCTTTCAAAGTGTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTTGATAAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGATTAGTTGAGTATAAAATCTGCat                                                                                     >  2:5589047/1‑128 (MQ=255)
                                               tCAAAGTGTATTTTTTA‑GGC‑TTGT‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATAAACCAAAAATATA‑T‑AAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATATGCatttt                                                                                  >  2:7047451/1‑125 (MQ=255)
                                                aataGTGTATTTTTTA‑TGG‑TTT‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                                                                                <  1:6464093/125‑1 (MQ=255)
                                                     tgtATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTT‑T‑‑AAAAAT‑AAAATT‑AAGATTTGGTTCAACAAAAACTAAA‑A‑AAAAAAAATTAAAAAAAATAATTTATGTGAGATAAAAAAATGCatattaattaaaa                                                                          >  1:4916276/1‑119 (MQ=255)
                                                      tttttttttt‑tGT‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaa                                                                          <  1:2440358/125‑1 (MQ=255)
                                                       tATTTTTTA‑GGC‑TTGTT‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAAATT‑AATATTTGGATAAACCAAAACTATA‑T‑AAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAAAAATCATATATATTaaa                                                                           >  2:7717195/1‑126 (MQ=255)
                                                             ttA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTTT‑‑AAAAAT‑AAAAGT‑AATATTTGGATCAACCAAAAATATA‑T‑AAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTAAAATCTGAATATATAGTTCAaattaatt                                                                   >  2:3604331/1‑128 (MQ=255)
                                                               ttttttttG‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAtt                                                                   <  1:6671661/122‑1 (MQ=255)
                                                                 tttttttttttttttttttttt‑‑ttttttt‑‑TAAAAT‑TAAATT‑TATTTTTTGTTTAAACAAAAATATA‑T‑TAAAAAAATTTAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa                                                                     <  1:2759304/117‑1 (MQ=255)
                                                                 tttttttttttttttttttttt‑‑ttttttt‑‑AATAAT‑AAAAGT‑AAGATTTGGATTAACAAAAATTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa                                                                     <  1:5469742/117‑1 (MQ=255)
                                                                     tttttttttttttttttt‑‑tttttGT‑‑AAATAT‑TAAAGT‑AAGTTTTGGATTAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                                 <  1:5911741/121‑1 (MQ=255)
                                                                      ttttttttttttttttt‑‑tttttGT‑‑AAATAT‑ATAAGT‑AAGATTTTTATAAAAATAAAATATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  1:4699038/122‑1 (MQ=255)
                                                                         tttttttttttttt‑‑ttttttt‑‑ATAATT‑AAAATT‑AATATTTTTATTAAATAAAAATATA‑T‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTTAAATATGCATATATAGTACAAAGGAATTTATGAt                                                             <  1:1021409/125‑1 (MQ=255)
                                                                           tttttttttttt‑‑tttttGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                                           <  2:6154454/127‑1 (MQ=255)
                                                                            ttttttttttt‑‑tttttGT‑‑AAAAAT‑AAAAGA‑AAGATTTGTATAAACAAAAAATAAA‑A‑AAAAAAAATTAAAAAAAATATTTTTTTTTTTTTTAAAATATTAATATAAATTAAAAATCAATTAATGATata                                                          >  2:4703091/1‑126 (MQ=255)
                                                                             tgtttttttt‑‑tttttGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                                         <  1:1455068/126‑1 (MQ=255)
                                                                                     tt‑‑ttttttT‑‑AAAAAT‑AAAAGT‑AAGATTTGGGTCAACCAAAACTTTA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATATGCATTTATTGTAAAAAGGAATTTATGATAGAAAAAAATgt                                                 >  2:303320/1‑127 (MQ=255)
                                                                                     tt‑‑tttttGT‑‑AAAAAT‑TATAGT‑AAGTTTTGGATCTACAAAAATTATA‑T‑CAAAAAAATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACTAAGGAATTTATGATAGAAAAAAATgg                                                 <  1:3121072/128‑1 (MQ=255)
                                                                                     tt‑‑tttttGT‑‑AAAAAT‑AAAATT‑AAGATTTGGGTCAACCAAAAATATT‑T‑AAAAAAAATTAAAAAAAATATTTTTTTTGAGTTTAAAAAATGCATATAAATTACAAAGGAATTTATTATATAAAAAAATgg                                                 >  2:3947827/1‑128 (MQ=255)
                                                                                      t‑‑tttttGT‑‑AAAAAA‑AAAAGT‑AATATTTTGAAAAACCAAAAAAATA‑T‑AAAAAAAATTAAAAAAAATAGTTTATTTGATTTTCAAATCTGCATATATAGTTAAAAGGAATTTATTATAGAAAAAAATTGa                                                >  2:7601556/1‑128 (MQ=255)
                                                                                         tttttGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAATACTATA‑T‑CATAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  2:2375489/128‑1 (MQ=255)
                                                                                          ttttGT‑‑AATAAT‑AATAGT‑AAGTTTTTGATTATCAAAAAATATA‑T‑CAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                              <  1:4279057/128‑1 (MQ=255)
                                                                                            ttGT‑‑AAAAAT‑TAAAGT‑TAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                            <  2:5975998/128‑1 (MQ=255)
                                                                                            ttGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                            <  1:7560511/128‑2 (MQ=255)
                                                                                              gT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                                          <  1:7724302/128‑4 (MQ=255)
                                                                                               t‑‑AAAAAT‑AAAAGT‑AAGATTTTGATCAAAAAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTg                                         <  2:3461392/128‑1 (MQ=255)
                                                                                                  aaaatT‑ATAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                                        <  2:2056984/128‑1 (MQ=255)
                                                                                                  aaaaaT‑AAAAGT‑AAGATTTGGATCAAAAAAAAATATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                                        <  1:4523603/128‑6 (MQ=255)
                                                                                                   aaaat‑aaaatT‑AAGATTTGTATCAAAAAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  2:4262133/128‑1 (MQ=255)
                                                                                                   aaaaa‑aaaAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATTTGAt                                       >  1:7662728/1‑128 (MQ=255)
                                                                                                       t‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGTATTTATGATAGAAAAAAAAGGATTAGTTGATAATc                                   >  1:2064466/1‑128 (MQ=255)
                                                                                                       t‑AAAAGT‑AAGATTTGGATCAACCAAAAATATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:6777806/128‑1 (MQ=255)
                                                                                                         atattt‑AAGTTTTTGATAAACTATAACTATA‑T‑CAAAAAAATTAAAATAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  2:6892248/123‑1 (MQ=255)
                                                                                                         aaaaGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  >  1:1958343/1‑128 (MQ=255)
                                                                                                           aaGT‑ATGATTTTGATCATAATTAACTTTA‑T‑AAAAAATATTAAAAAAAATAGTTTATTTGAGTTTCAAATCTGAATATATAGTAAAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  2:4050883/128‑1 (MQ=255)
                                                                                                              t‑AAGATTTGTATTAAAAAATAATTTA‑T‑AAATAAAATTAAAAAAAATTGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                             <  2:1282293/128‑1 (MQ=255)
                                                                                                                aaGATTTGGATCAACCAAAACTTGA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATAGATTAGTTGATAATCCAttttt                            >  2:4473311/1‑128 (MQ=255)
                                                                                                                aaGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            >  2:912845/1‑128 (MQ=255)
                                                                                                                aaGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            >  1:3739143/1‑128 (MQ=255)
                                                                                                                 aGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATATTACAAAGGAATTTATGATAGAAAAAAATGTATTATTTGATAATCCAtattat                           >  1:5994260/1‑126 (MQ=255)
                                                                                                                 aGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAgttttt                           >  1:7933578/1‑128 (MQ=255)
                                                                                                                 aGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTCAGTTTCAAATCTGCATATATAGTACAAAGGATTTTATGATAGAAAAAATTGCATAAGTTCATAATCCAtttttt                           >  2:7813932/1‑128 (MQ=255)
                                                                                                                 aGATTTGGATCAACAATAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt                           <  1:3390114/128‑1 (MQ=255)
                                                                                                                  gATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  2:7437074/1‑128 (MQ=255)
                                                                                                                   aTTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCAATATTTTaa                         >  1:6562685/1‑128 (MQ=255)
                                                                                                                   aTTTGGATAAAACAAAAATATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATCAACTAATCCAtttttttc                         <  2:1942164/128‑3 (MQ=38)
                                                                                                                    tttGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        >  1:3627767/1‑128 (MQ=255)
                                                                                                                    tttGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATAAATAGTACAAAGGAATTTATAATAGAAAAAAATGAATAATTGGATAATCAATTTTTTAAt                        >  1:7346357/1‑128 (MQ=255)
                                                                                                                     tttgATCAAAAAAAAATATA‑T‑CAAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt                       <  2:6502699/125‑1 (MQ=255)
                                                                                                                      tGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATTATCAATTTTTTAAttt                      >  2:1035471/1‑128 (MQ=255)
                                                                                                                      tGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  1:879667/1‑128 (MQ=255)
                                                                                                                       ggATCGACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATATTCCATTTTTTAAtttt                     >  2:5385056/1‑128 (MQ=255)
                                                                                                                        gATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    >  2:4603977/1‑128 (MQ=255)
                                                                                                                        gATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATAAGTTGATAATCCATTTTTTAATTTTg                    >  2:7198554/1‑128 (MQ=255)
                                                                                                                        gATAAAACAAAAATATA‑T‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTg                    <  2:7914989/128‑1 (MQ=255)
                                                                                                                             attataattata‑t‑aAAAAATATTAAAATAATTAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               <  1:173014/120‑1 (MQ=255)
                                                                                                                             aCCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat               >  2:6253606/1‑128 (MQ=255)
                                                                                                                              ccAAAAATATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt              <  1:7219042/128‑1 (MQ=255)
                                                                                                                                atatatata‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  1:125802/123‑1 (MQ=255)
                                                                                                                                 aatcTATA‑T‑AAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           <  2:6343086/125‑1 (MQ=255)
                                                                                                                                 aaaCTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 >  2:2189651/1‑122 (MQ=255)
                                                                                                                                 aaaCTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           <  2:7319142/128‑1 (MQ=255)
                                                                                                                                   aatata‑T‑CAATAAAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAatt         <  1:2607777/126‑1 (MQ=255)
                                                                                                                                   aCTATA‑T‑CAAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAatt         <  1:2193304/128‑1 (MQ=255)
                                                                                                                                      ata‑t‑TATAAAAATTAAAAATAATTGTTTAGTTGAGTTTCAAATCTGGATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      <  1:5068686/128‑1 (MQ=255)
                                                                                                                                      ata‑t‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaactaa                                     <  2:5218180/97‑9 (MQ=255)
                                                                                                                                      ata‑t‑AAAAATTATTAATAAATATAGTTTAGTTGAGTTTAATATCTGCATATATATTAAAAAGGAATTTATGATAGAAAATAATGGTTTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      <  2:6679323/128‑1 (MQ=255)
                                                                                                                                        a‑t‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTaa    >  1:290325/1‑128 (MQ=255)
                                                                                                                                        a‑t‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTaa    >  2:6583068/1‑128 (MQ=255)
                                                                                                                                            cAAAAAAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATACAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGc  >  1:1872087/1‑128 (MQ=255)
                                                                                                                                            |                                                                                                                               
GCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GGC‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTTGT‑‑AAAAAT‑AAAAGT‑AAGATTTGGATCAACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203826‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑