Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4880T.50.2% 490.3 / inf 471intergenic (+266/‑409)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (126/101);  new base . (32/197);  total (171/300)
Fisher's exact test for biased strand distribution p-value = 2.64e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 499 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATA  >  CP016816/202370‑202616
                                                                                                                        |                                                                                                                                 
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑Ttaaaaattaaaa                                                                                                                        >  1:1581529/1‑128 (MQ=255)
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAAAAAACCCAtt‑‑‑aaaaataaaaa                                                                                                                       >  1:2384500/1‑128 (MQ=255)
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTAACAAAT‑AAAAAAAAAAAAATCACC‑‑Taaaaaaataaaa                                                                                                                        >  1:4068384/1‑128 (MQ=255)
   ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAT‑ATGTAGATCCTCGAGATCTATTTTATTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAAAAAAACC‑‑AATAAAAAATaaaaaaaa                                                                                                                    >  2:3946696/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATATATATCCTCTTGATCTAAATAAATATTTGATT‑ATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAAAAATaaaaaaaaa                                                                                                                   >  2:1781205/1‑128 (MQ=255)
     atttttAAAGTTAAATTAAAAAAAATAAAATTTATAATTCTTATAATTTTTCACCTGTTTTTTTTTTTTTTTTTTTTTTT‑TTTTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                   <  1:3610623/124‑1 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAACCAC‑‑TTAAAAATTaaaaaaaaa                                                                                                                   >  2:3722874/1‑128 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTTTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                   >  1:353619/1‑128 (MQ=255)
       agTTAATGTTAATTAAAATAAAATAAAATTAATAATTCTTATAATGTATATCCTCGTTATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaa                                                                                                                 <  2:3499841/128‑1 (MQ=255)
        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAATAAAAAAAAAAACAAACACC‑‑‑TAAAAAATtaaaaaaaaaaa                                                                                                                >  1:4550988/1‑128 (MQ=255)
        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑‑TAAAAAATtaaaaaaaaaaaa                                                                                                               >  1:1516758/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaa                                                                                                              >  2:3693275/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                             >  1:4414297/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCC‑‑‑AATAAAAAATtaaaaaaaaaaaaaaa                                                                                                            >  1:1387722/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                             >  2:4496641/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaa                                                                                                             >  1:4337870/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCCATTTTTTTATTTGTTT‑ATCTTCACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAAAAATaaaaaaaaaaaaaaaa                                                                                                            >  2:1365074/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTATTAATTAGTAT‑ATCTTCACAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                            >  2:3332836/1‑128 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                            >  1:2322825/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                           >  1:4282127/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                           >  2:4079834/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATAT‑ATCTTCACAAAT‑AAAAAAAAAAAAATAAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                           >  2:1151235/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTTTTTATTTGTTT‑ATCTTAACAAAT‑AAAAAAAAAACAAAAAC‑‑‑AAAAAAAATtaaaaaaaaaaaaaaaaa                                                                                                          >  2:1676735/1‑128 (MQ=255)
               ttaattaaAAAACAATAAAATTAAATATTTTTTTAATTTATATACTTTTTTTTATTTTTTTTATTTTTTT‑ATTTTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaac                                                                                                         <  1:3797956/128‑2 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  2:2991017/1‑128 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:3562647/1‑128 (MQ=255)
                taattaaAATACCATAAAAATATAAATTATTATAAAGTTTTACCTAGGGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaac                                                                                                        <  1:3557710/128‑2 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTATATACTCTTGATCTATTTTTTTATTTGTTT‑ATATTAAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:8174/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:3771777/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:2324477/1‑127 (MQ=255)
                 aattaaAATAAAATAAAATTAATAATTCTTATAATGTATATACTCGTTATATATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaact                                                                                                       <  2:1644930/128‑3 (MQ=255)
                 aattaaAAAAAAATAAAATTAATAATTTTTAAAATTTATAACATCTTTTTATATTTTTTTTTTTTTTT‑ATCTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                       <  2:4540563/128‑1 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  1:1302124/1‑127 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTT‑ATCTAAACAAAT‑AAAAAAAAAACAAACAACTTAAAAATAaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:2853383/1‑128 (MQ=255)
                    taaAATACCATAAACTTAATAAATCTAATAATGAAGATCCTCGTGATCTATTATTTTATTTCTTT‑AACTTCACAAAA‑AAAAAAAAAACAA‑‑AAAAATTAAAAAATaaaaaaaaaaaaaaaaataaaaaa                                                                                                    >  2:2489638/1‑125 (MQ=255)
                    taaAAAACAAAAAAATTTATAATTATTAAAATTTATATCCTCGGGATCTATTTTTTTATTTGTTT‑ATATTAACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaa                                                                                                   <  2:4359749/128‑1 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:2980086/1‑123 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTAATAATGTAGATACTCGTTATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaacaaaaa                                                                                                   >  1:1946110/1‑122 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:412303/1‑123 (MQ=255)
                      aaaTACAATAAAATTAATAAATATTAAAATTTATATACTAGTTTTCTATTTTTTTATTTTTTT‑ATATTCAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                                 <  2:3676221/128‑1 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  1:3866567/1‑128 (MQ=255)
                        aTAACATAAAATTAATAATTATTATAATTTATATACTTTTGATATATTTTTTTTTTTGTTT‑TTTTTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                               <  1:3398008/128‑1 (MQ=255)
                         atcaaTAAAATTAATAAATCTTAATATGTATAACCCCGTTTTATATTTTTTTTTTTTTTT‑ATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                              <  2:3836549/124‑1 (MQ=255)
                          aacttAAAATTTATAATTCTTATAATGTAGATAATAGTTATATATTTTTTTATTTGTTT‑ATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                            <  2:1003330/124‑1 (MQ=255)
                            attaaaaataataaTTATTATAATTAAGATAAACGTTAAATAATTTTTTATTTTTTA‑AAATTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                            <  2:1235158/120‑1 (MQ=255)
                             aaaaaCTTAAAAATTATTAAAAATTACAACCACGTTATTTATTTTTTTAATTTTTA‑ATCTTAAAAAATAAAAAAAAAAACAATCCCC‑‑TTAAAAAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                         <  2:2578567/126‑1 (MQ=255)
                             aTAAACTTAATAATTATTATAATTTATATCATAGTGATTTATTTTTTTATTTTTTT‑ATCTTAACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                         <  2:3098666/128‑1 (MQ=255)
                              tAAAATTAAAAATTCTAATAATGTACAACCTCGTGATCAATTTTTTTATTTGTTT‑AACTTAACAAAT‑AAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                        <  2:868899/128‑1 (MQ=255)
                              tAAAATTAAAAAATATAATAATTTAAAACCTAGTTATCATATTTTTTATTTGTTT‑ATATTCAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                        <  2:3363296/128‑1 (MQ=255)
                              aaaaaTTAATAATTTTTATAAATTATATCCTCGTGATATATTTTTTTATTTTTTT‑ATATTCACAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                        <  2:4395627/127‑1 (MQ=255)
                               aaaCTTAATAATTATTATATTGTATTTACTTGTTTTATATTTTTTTATTTTTTT‑AACTTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                        <  1:3934040/128‑1 (MQ=255)
                                aaCTTTATAATTTTTATAATTTAGATACAAGTTATTTATTTTTTTATTTTTTT‑ATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                      <  2:4128518/128‑1 (MQ=255)
                                 aaataataaATATAATAATTTATATCCTAGTTATCTATTTTTTTATTTTTTT‑AAATTAACAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                       <  2:742455/125‑1 (MQ=255)
                                   ttattaATTCTTATAATGTTTTTCCTTTTGATTTTTTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                   <  2:3778651/128‑1 (MQ=255)
                                     aataatTATTTAAATTTATATACTTTTTATATATTTTTTTATTTTTTT‑ATATTAAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                <  2:3646565/128‑1 (MQ=255)
                                        aatTTTTATAATGTATATCCTAGTGATATATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                              <  2:2260658/128‑1 (MQ=255)
                                                 aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAACAACTATATTTGATAAAAATGCCttt                                                                     >  1:1167506/1‑126 (MQ=255)
                                                        attatatttatttatttttttattttttT‑TTTATAATAAAT‑TAAAAAAAAAAAATTACC‑‑TTATAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACca                                                             <  2:1907504/116‑1 (MQ=255)
                                                        atacaagttatatatttttttattttttT‑ATATTAACAAAT‑AAAAAAAAAAAAATCCACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACca                                                             <  2:2918138/116‑1 (MQ=255)
                                                        ataatttttatttatttttttattttttT‑TTTTTAAAAAAT‑AAAAAAAAAAAAATAACATT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcac                                                            <  1:2116515/116‑1 (MQ=255)
                                                        aTCCTAGTTATATATTTTTTTAATTGTTT‑ATATTCAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACca                                                             <  2:4034957/128‑1 (MQ=255)
                                                         ttatttttttaaatttttttattttttt‑ATATTAAAAAAA‑AAAAAAAAAAAAAAAAACCTT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACca                                                             <  1:4222542/116‑1 (MQ=255)
                                                         tacattttatatatttttttattttttT‑TTATTAAAAAAA‑AAAAAAAAAAAAAATCCCCTT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACca                                                             <  2:539468/117‑1 (MQ=255)
                                                         aacacGTGTTCTTTTTTTTTATTAGTTT‑AAATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑‑TAAAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcac                                                            <  1:443830/124‑1 (MQ=255)
                                                          tatagtttttatttttttttttttttT‑ATATTAAAAAAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcac                                                            <  1:1012030/116‑1 (MQ=255)
                                                          attctttttttatttttttattttttT‑ATATTAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcaca                                                           <  1:3721246/118‑1 (MQ=255)
                                                          aatcttGATATATTTTTTAATTTTTTT‑AATTAAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcaca                                                           <  2:212713/123‑1 (MQ=255)
                                                            tCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAAAACAATTTAATAAAATACAATATT‑ATAAcaaaatt                                                        >  2:3462457/1‑123 (MQ=255)
                                                             agttaaattttttttttttttttT‑ATATAAAAAAAT‑AAAAAAAAAAAAATAACCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattt                                                        <  2:398258/119‑1 (MQ=255)
                                                                tatatttttttttattttttt‑aTATAAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttat                                                     <  2:4164637/122‑1 (MQ=255)
                                                                 ttttttttttttattttttt‑aTAT‑‑AAAAAA‑AAAAAAAAAAAAATACCCTTT‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttatttt                                                  <  1:2362556/123‑1 (MQ=255)
                                                                 ttatatttttttattttttT‑ATTTTAAAAAAT‑TAAAAAAAAACAATACCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttatttt                                                  <  2:3533305/125‑1 (MQ=255)
                                                                   atATTTTTTTATTTGTTT‑ATATAAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttatttt                                                  <  2:389117/127‑1 (MQ=255)
                                                                   aattttttttattttttt‑aTATTAAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttatttt                                                  <  1:1149412/125‑1 (MQ=255)
                                                                     tattttttATTTGTTT‑ATATTAAAAAAA‑AAAAAAAAAAAAAATCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTa                                                <  1:1094247/126‑1 (MQ=255)
                                                                     aattttttATTTTTTTAATTTTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTAttttt                                                 <  1:1663211/126‑1 (MQ=255)
                                                                      tttttttattttttt‑aTAATAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTa                                                <  2:580604/128‑1 (MQ=255)
                                                                      tttttttATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAATAACCA‑‑TCTTTTTCTAAAAATTACATATA‑AAACCACAATTTATTTTTaa                                               >  1:4176209/1‑128 (MQ=255)
                                                                       ttttttttttttTA‑TTATTAAAAAAT‑AAAAAAAAAAATATCACCTT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaaa                                              <  1:3695390/128‑1 (MQ=255)
                                                                       ttttttATTTTTTT‑AAATTAAAAAAA‑AAAAAAAAAAAAAACACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaa                                               <  2:3656476/128‑1 (MQ=255)
                                                                       ttttttATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATTAATTTATT‑AAATTACAAATTAAAACAAAATTTTATTTTTaa                                               >  1:3992599/1‑128 (MQ=255)
                                                                       ttttttATT‑‑TTT‑ATATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATa                                           <  1:2441229/128‑1 (MQ=255)
                                                                         ttttAATTTTTT‑ATATTAAAAAATAAAAAAAAAAACAATCCCCTT‑‑‑ATAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaaa                                              <  2:2816196/128‑1 (MQ=255)
                                                                          ttttttTGTTT‑ATATTCAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATa                                           <  1:3006469/128‑1 (MQ=255)
                                                                          tttATTTTTTT‑ATATTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATa                                           <  2:154262/128‑1 (MQ=255)
                                                                            ttattGTTT‑ATATTAAAAAAA‑AAAAAAAAAACAATCACATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGa                                        <  2:461539/125‑1 (MQ=255)
                                                                             aTTTGTTT‑ATTATATAAAAA‑AAAAAAATAAAAATTCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGa                                        <  1:487933/128‑1 (MQ=255)
                                                                             aTTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAACTAAATTTATAAAAATTCCCTATT‑AAACCAATTTTTTTTTTTAAAAAAAAat                                       >  1:3424900/1‑128 (MQ=255)
                                                                               tttttt‑ATATTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGata                                      <  2:2146006/125‑1 (MQ=255)
                                                                               ttGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGatat                                     <  2:2762823/128‑1 (MQ=255)
                                                                                   tt‑ATCATCAAAAAT‑AAAAAAAAAAAAATCCACTT‑‑‑ATAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTg                                   <  2:2085589/128‑1 (MQ=255)
                                                                                    t‑ataTTAACAAAA‑AAAAAAAAAAAAAACCC‑‑AATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGa                                  <  2:4204703/128‑1 (MQ=255)
                                                                                    aatataaaaaaaaa‑aaaaaaaaaaaaATACCATT‑‑‑AAAAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGa                                  <  2:4445111/118‑1 (MQ=255)
                                                                                     taatttaaaaaaT‑AAAAAAAAAACAATCCAATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACAAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACa                                <  1:3507974/119‑1 (MQ=255)
                                                                                           aaaaaaT‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACataata                           <  2:4287864/125‑1 (MQ=255)
                                                                                             caAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTCATTTTTAAAATAAGATATTGACATAatata                         <  2:1088386/128‑1 (MQ=255)
                                                                                             aaaaT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                        <  2:145685/127‑1 (MQ=255)
                                                                                              aaaT‑AAAAAAAAAAAAATACCATT‑‑‑AAAAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATAACACATTTTATTTTTAAAATAAGATATTGACATAatatata                       <  1:17349/128‑1 (MQ=255)
                                                                                                aT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAAAAAACACTATTTATTAAAAATAAAAATT‑ATAACAAATTTTATTTTAAAAAAAAAAAATTAAAATAttatata                       >  2:3402786/1‑128 (MQ=255)
                                                                                                                  tccccttaaaaattaaaaaAAAAAAAAAAAAAAAAAT‑AAAACAAAATATATTTATTAAAATTCAAAAAT‑ATAACAAATTTTATTTTAAAAATAAAATAATTACAAAATATATAAATAAAATATaaaaa        >  2:2401144/6‑127 (MQ=255)
                                                                                                                        |                                                                                                                                 
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATA  >  CP016816/202370‑202616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑