New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 34945417 (0.520)275 (0.310)
+AAA
83/214 21.2 37.8% intergenic (+49/+117) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
?CP016816 34946 = 452 (0.500)intergenic (+50/+116) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 768 total aligned reads displayed.

TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34819‑35073
                                                                                                                                          |                                                                                                                                        
tttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTTAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTAGATTTTTATATT‑T‑ACTA‑TA‑‑‑‑G‑‑‑‑a                                                                                                                                          >  2:168671/1‑128 (MQ=255)
 ttACTTCTTTATGAGTTTCAACAAAAAGAGTAATAAATGCTGAACCAAGTACAATGCTAAGTGAATATGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTTGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aa                                                                                                                                         >  2:1258815/1‑128 (MQ=255)
 ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTGGATTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aa                                                                                                                                         >  2:425757/1‑128 (MQ=255)
     ttatttATTTGTTTAAACAAAAAGATTAATAAATGCTGAACCAAGTACAATGGTTAGTGACGTTGTTTAATAATAAAATTTTAAACAAAATACTTTGGGTTTGGTTTTTTTATT‑T‑ACTT‑TT‑‑‑‑T‑‑‑‑aaa‑aa‑a                                                                                                                                   <  1:1667260/125‑1 (MQ=255)
        tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAGGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATA‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aaa‑aa‑aaaa                                                                                                                                >  1:1851016/1‑128 (MQ=255)
        tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aaa‑aa‑aaaa                                                                                                                                >  1:378337/1‑128 (MQ=255)
          tATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑T‑‑‑‑aaa‑aa‑aaaaaa                                                                                                                              >  1:533074/1‑128 (MQ=255)
          tATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aaa‑aa‑aaaaaa                                                                                                                              >  1:1605130/1‑128 (MQ=255)
           aTGATTTTAAAAAAAAATATTAATAAATTCTCAACAAATTAAAATGTTAATTTAATTTTATTAATAAAAAAAAAAAAAACAAAAAACATTGTGTTTGGTTTTTTTATT‑T‑AATA‑TT‑‑‑‑T‑‑‑‑aaa‑aa‑aaaaaaa                                                                                                                             <  2:762895/128‑1 (MQ=255)
              aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGTTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑T‑‑‑‑aaa‑aa‑aaaaaaaaaa                                                                                                                          >  2:808256/1‑128 (MQ=255)
                tttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aaa‑aa‑aaaaaaaaaaaa                                                                                                                        >  1:113731/1‑126 (MQ=255)
                  taaaaaaaaaTATTAATAAATCCTGAACAAATTAAAATTCTAATTTATTTTGATTAATAAAAAAATATAAAACCAAAAAAATTTTGTTTGGTTTTTTTATT‑T‑AATA‑TT‑‑‑‑T‑‑‑‑aaa‑aa‑aaaaaaaaaaaata                                                                                                                      <  2:366029/123‑5 (MQ=255)
                  tCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTATGTTTGTTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑T‑‑‑‑aaa‑aa‑aaaaaaaaaaaaaa                                                                                                                      >  1:355239/1‑127 (MQ=255)
                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAATTGAAGTTTATTAATAATAAAAGATTAAACCAAATACATATAATAAAGATATTTTATT‑T‑ACTA‑TT‑‑‑‑A‑‑‑‑aaa‑aa‑aaaaaaaaaaaaaaa                                                                                                                     >  2:1426829/1‑126 (MQ=255)
                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aaa‑aa‑aaaaaaaaaaaaaat                                                                                                                     >  2:1585676/1‑126 (MQ=255)
                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aaa‑aa‑aaaaaaaaaaaaaaa                                                                                                                     >  1:1813423/1‑126 (MQ=255)
                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑aaa‑aa‑aaaaaaaaaaataaa                                                                                                                     >  1:1237586/1‑123 (MQ=255)
                     acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAaaaa‑‑aa‑‑‑ta                                                                                                              >  2:571176/1‑128 (MQ=255)
                          aaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAAtt                                                                                                           >  2:178772/1‑128 (MQ=255)
                           agagTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAaaaa‑‑aa‑‑‑taaaaatt                                                                                                        >  1:1548190/1‑123 (MQ=255)
                                 aaaaaTGATGAACAAAGTACAATGCTAAGTGAAGTTGTTTAATAATAAAATTTTAAACCAAATACATTGTGTTTGGTTTTTTTTTT‑T‑AATA‑TT‑‑‑‑‑‑‑‑‑TAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACtat                                                                                                 <  1:1006183/126‑1 (MQ=255)
                                  taaaTGGTGAACCAATTACAATTCTAATTTAAGTTTATTAATAATAAAATATTAAACCAAATACATTTTTTTTGGTTTTTTTTTT‑T‑AATATTT‑‑‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACta                                                                                                  <  1:685607/127‑1 (MQ=255)
                                  gAAATGCTGAACCAAGTACAATCCAAAGTCAAGTTGATGAATAATAAAACATTAAACCAAATACATAGTGATAGCTTTTTATATT‑T‑AATA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAaaaa‑‑aa‑‑‑aaataaattcaaaac                                                                                                 >  1:570601/1‑117 (MQ=255)
                                   aaaTTCTTAACAAAGTACATTGGTAAGTGTTTTTTTTTAATAATAAAATTTTAAACCAAATAAATTGTGTTTGGTTTTTTTATT‑TAATTT‑TT‑‑‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACtat                                                                                                 <  1:142449/128‑1 (MQ=255)
                                   aaaTGCTTAACCAATTTAAATTCTATGTGAAGTTGTTGAATAATAAAAGATTAAACCAAATAAATTGTGTTTGGTTTTTTTATT‑T‑AATT‑TT‑‑‑‑T‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACtata                                                                                                <  1:177364/128‑1 (MQ=255)
                                   aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑AAAttttaaaaataa                                                                                                 >  2:720848/1‑119 (MQ=255)
                                          gAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAATAA‑‑AA‑‑‑TAATTTAAATAATaaaaaaaa                                                                                           >  2:861172/1‑128 (MQ=255)
                                                aGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTTAATAATATAAAAAATtttttt                                                                                    >  1:168353/1‑128 (MQ=255)
                                                       tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑AAATTTGAATAATATAAAAAATTTTATATAAAAT‑aa                                                                           >  2:611886/1‑128 (MQ=255)
                                                        gCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTTAATAATATAAAAAATTTTTTTTCAAAT‑a                                                                            >  2:100524/1‑128 (MQ=255)
                                                        gCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑AA‑‑‑AAATTTTAAAAAAATAAAAAATTTTTTTTAaaaa‑aa                                                                           >  2:1869139/1‑128 (MQ=255)
                                                        gCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTGGTTTTTTTATT‑T‑ACTA‑TA‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑AA‑‑‑AAATTTAAAAAATAAAAAAAATTTTTTTTaaaaaa                                                                             >  1:435356/1‑126 (MQ=255)
                                                         cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑AA‑‑‑TAATTTTAATAAAATAAAAAAATTTTTTTAaaaa‑aaa                                                                          >  2:1120919/1‑127 (MQ=255)
                                                              tGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGAATAATATAAAAAATTATTTTAAAAAT‑aataaata                                                                     >  2:838545/1‑122 (MQ=255)
                                                                  gTTTATTAATAATAAAAGATTAAACCAAATAAATTTTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGa                                                                 <  2:1817253/128‑1 (MQ=255)
                                                                   ttGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑TA‑‑‑AAAATTAAATAATAAAAAAAATTTTTTTTAaaaa‑aataataaataat                                                                >  2:1345036/1‑117 (MQ=255)
                                                                   ttGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TA‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑AA‑‑‑TAATATAAATAATAAAAAAAAATATTTTTAAAAA‑AATAATTCaaaa                                                                 >  1:639494/1‑125 (MQ=255)
                                                                       ttaataatAAAATTTTAAACCAAATAAATTGTTTTTGGTTTTTTTATT‑T‑AATATTT‑‑‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTaaa                                                            <  1:1494919/126‑1 (MQ=255)
                                                                       tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATAATATAAAAAATTGTTTTTCAAAT‑AAGTATTAATGATTaaa                                                            >  2:1841830/1‑128 (MQ=255)
                                                                          ataataAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TTTAAAA‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTAAAAAATAAAAAAAATTTTTTTTAAAAT‑AAATAttaaaaaataat                                                            >  1:1958125/1‑118 (MQ=255)
                                                                             ataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑TA‑‑‑TAATTTGAAAAAATAAAAAAATTTTTTTTCAAAT‑AAGTATACAGGAGTaaaataaa                                                       >  1:1580485/1‑123 (MQ=255)
                                                                              taaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTTTTTTTCAAAT‑AAGTATTCATTATTAAATTTaaaaa                                                    >  2:1213560/1‑128 (MQ=255)
                                                                               aaaaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TTTAA‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑AAATTTGAATAATATAAAAAATTTTTTTTAAAAA‑AATTATAAAATAATAAATTTaaa                                                      >  2:695515/1‑128 (MQ=255)
                                                                                aaaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAAA‑AAA‑AA‑AAAAAAAAAATAA‑‑TT‑‑‑TAATTTTAATAATATAAAAAATTTTTTTTAAAAT‑AATTTTTAATGTTTAAATTTaaaa                                                     >  1:1257182/1‑128 (MQ=255)
                                                                                 aaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGAATAATATAAAAATATTTATTTAAAAA‑AATTATTAAGTAGTAAATTTaaaaaaa                                                  >  2:164842/1‑127 (MQ=255)
                                                                                  ataTTAAACAAATAAAATTGTGTTTGTTTTTTTTATT‑T‑ACTA‑TTTA‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAAc                                                  <  1:1624059/126‑1 (MQ=255)
                                                                                   gATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAAAAAAA‑AA‑AAAAAAAAAATAT‑‑TA‑‑‑TAATTTTAATAATAAAAAAAATTATTTTAAAAAT‑AATTATAAATTATTAAATTTaaaaaa                                                   >  2:202879/1‑128 (MQ=255)
                                                                                   gATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTTTTTTTCAAAT‑AAGTATTCAGTAGTAAATTTAAAAAAcaa                                                >  1:204744/1‑126 (MQ=255)
                                                                                    ataaaaaCAAATACATTTTGTTTGGTTTTTTTATT‑T‑AAAA‑TT‑‑‑‑T‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAag                                              <  1:1372947/125‑1 (MQ=255)
                                                                                    ataaaaCAAAAAACATTGTTTTTGGTTTTTTTATT‑A‑ATTATTT‑‑‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCaa                                               <  2:1046600/125‑1 (MQ=255)
                                                                                     ttAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTTAATAATATAAAAAATTTTTTTTAAAAT‑AATTATTAATTATTAAATTTAAAAAACaaa                                               >  2:290900/1‑128 (MQ=255)
                                                                                      tAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑AAAATTATTTTGAATAAT‑TAAAAATTTTTTTTTTAAATAAATTATTATGTATTAAATTAAAAAAACaaa                                               >  2:171310/1‑128 (MQ=255)
                                                                                       aaaCCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAAA‑AAA‑AA‑AAAAAAAAAAAAA‑‑TA‑‑‑TAATTTTAATAATATAAAAAATTTTTTTAAAAAT‑AATTATAAAATAG‑AAATATAAAAAAACaaat                                             >  2:1103056/1‑126 (MQ=255)
                                                                                       aaaCCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑TA‑‑‑AAATTTGCATAAAATAAAAAATTTTTTTTCAAAT‑AATAATAAAGTATTAAATTTAAAAAACCaaaat                                            >  1:975773/1‑125 (MQ=255)
                                                                                       aaaCCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAAAAAATTA‑‑‑AAAATAAAATAATAAAAAAAATTGTTTTACAAAT‑AATAATTCAGTATAAAATTTAAAAAACaaaaa                                             >  1:1930886/1‑126 (MQ=255)
                                                                                          aaaaataaatTTTTTTTGGTTTTTTTTTT‑T‑TATA‑TTTAA‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGt                                           <  2:1450626/126‑1 (MQ=255)
                                                                                            aaattaatttttttttGTTTTTTTTTT‑T‑AATA‑TTTA‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                        <  1:328503/116‑1 (MQ=255)
                                                                                            aaaacatttggttttGTTTTTTTTATTAA‑ATTT‑TT‑‑‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat‑a                                      <  2:668209/116‑1 (MQ=255)
                                                                                            aaaaACATTGTGTGTGTTTTTTTTTTT‑T‑AATATTT‑‑‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat‑a                                      <  1:1289838/128‑1 (MQ=255)
                                                                                            aaaTACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAAA‑AAA‑AA‑AAAAAAAAAAAAA‑‑AA‑‑‑TAATTTTCATAATAAAAAAAAATTTTTTTAAAAA‑AATTATTAAGTATTAAATTTaaaaaaaaaaaaataa                                         >  2:269386/1‑118 (MQ=255)
                                                                                            aaaTACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTTTTTTACAAAT‑AAGTATAAATGATTAAATTTAAAAAACaaaaattaat                                        >  2:773561/1‑121 (MQ=255)
                                                                                            aaaTACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCTTACTATAAAAAATTGTTTTTAAAAT‑AAGTATTAAGGATTAAATTTAAAAAAACAAGAGATAT‑aa                                     >  2:386778/1‑128 (MQ=255)
                                                                                            aaaTACATTGTGGTTGGGTTTTTTATT‑T‑ACTA‑AT‑‑‑‑G‑‑‑‑AAA‑AATAAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat‑a                                      <  2:636274/128‑1 (MQ=255)
                                                                                             aaTACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATAATATAAAAAATTTTTTTTCAAAT‑AATTATTAAGGAGTAAATTTAAAAAACAAAGAGTTAT‑aaa                                    >  2:162389/1‑128 (MQ=255)
                                                                                              aaaCATTTTGTTTGGTTTTTTTTAT‑A‑ACTA‑TTTAA‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat‑a                                      <  2:1562732/126‑1 (MQ=255)
                                                                                              aTACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAA‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGAATAATATAAAAAATTGTTTTTCAAAT‑AATTATTCATTATTAAATTTAAAAAACCAAAAGTTaa‑aa                                     >  2:152926/1‑128 (MQ=255)
                                                                                              aTACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTACAAAT‑AATTATAAATTAGTAAATTTAAAAAACCAATAATTAa‑aaa                                    >  1:1906300/1‑128 (MQ=255)
                                                                                              aTAAATAGTTTTTGGTTTTTTTATT‑T‑AATATTT‑‑‑‑A‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTAT‑aac                                    <  2:1404660/128‑2 (MQ=255)
                                                                                               tACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGAATAATATAAAAAATTTTTTTAAAAAA‑AATTATTAAGTAGTAAATTTAAAAAACCATAATTTAT‑aaaa                                   >  1:230512/1‑127 (MQ=255)
                                                                                               caCAATGTATTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑TA‑‑‑TAATTTGCATACAATAAAAAATTGTTTTTCAAAT‑AAGTATTAAGGAGTAAATTTAAAAAAACAATATTTAT‑AAAt                                   >  1:1737640/2‑128 (MQ=255)
                                                                                                 cATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑AAATTTGAATAAAATAAAAAATTTTTTTTAAAAT‑AATAATTAATTAGTAAATTTAAAAAACCAATATTTAA‑AAATCt                                 >  1:792603/1‑128 (MQ=255)
                                                                                                      tgtTTGTATTTTATATA‑T‑ACAA‑TT‑‑‑‑C‑‑‑‑AAATAA‑TAAAAAAAAATAA‑‑TA‑‑‑TAATTTCCATACTATAAAAAATTTTTATACAAAT‑AATAATTCAGGAGTAAATTTAAAAAACCAAGAATTAT‑AACTCTTGGtt                            <  2:453032/128‑1 (MQ=255)
                                                                                                      tgtTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GAAA‑AAA‑AA‑AAAAAAAAAAAAA‑‑TA‑‑‑TAATTTGAATAATAAAAAAAATTTTTTTTAAAAA‑AATTATAAATAATTAAATTAAAAAAAAAAAAATTTAT‑AAAtaatgt                              >  2:899747/1‑123 (MQ=255)
                                                                                                      tgtTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTTTTTTTAAAAT‑AATTATAAATGAGTAAATTTAAAAAACAAAGAGTTAT‑AAATATTTGtt                            >  2:1754057/1‑128 (MQ=255)
                                                                                                       gtTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGAATACTATAAAAAATTTTTTTTCAAAT‑AAGTATTAAGGATTAAATTTAAAAAACCAAGAGTTAT‑AAATATTGtttt                           >  2:1911615/1‑128 (MQ=255)
                                                                                                        tttGGTTTTTTTATT‑T‑AATA‑TT‑‑‑‑T‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGttttt                         <  1:86617/128‑1 (MQ=255)
                                                                                                         ttGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGAATACTATAAAAAATTGTTTTTAAAAA‑AAATATTAATAATTAAATTAAAAAAACAAAGATATAT‑AAATCTTGGttttt                         >  2:1324412/1‑128 (MQ=255)
                                                                                                         ttGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAAAAA‑‑AA‑‑‑TAATTTTAAAAAAATAAAAAATTTTTTTTAAAAA‑AATTAATAATTATTAAATTTAAAAAAACAAAATTTAT‑AAAtaatttttttt                         >  1:599720/1‑118 (MQ=255)
                                                                                                          tGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑AAAATTTCATACTATAAAAAATTTTTTTTAAAAT‑AATTATTAAAGAATAAAATTAAAAAAAAAAAAATTAT‑AAAAAATGGttttttt                       >  1:146709/1‑127 (MQ=255)
                                                                                                           tttttttttATT‑T‑AATA‑TT‑‑‑‑T‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGt                      <  1:407703/126‑1 (MQ=255)
                                                                                                           ggTTTTTTTTTT‑T‑AATT‑TT‑‑‑‑T‑‑‑‑TAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGt                      <  1:1053999/128‑1 (MQ=255)
                                                                                                           ggTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATAATATAAAAATTTTTTTTACAAAT‑AAGAATTCAGTAGAAAATTTAAAAAACAAATAGTTAT‑AAATCTTGGTTTTTTg                       >  2:1963521/1‑128 (MQ=255)
                                                                                                           ggTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGAATACTATAAAAAATTTTTTTTCAAAT‑AATTATTCAGTATTAAATTTAAAAAACCAATATTTAT‑AAATATTGTtttttttt                      >  1:73823/1‑126 (MQ=255)
                                                                                                                ttttATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAT‑‑TT‑‑‑AAAATTTCATTATAAAAAAAATTTTTTTTAAAAA‑AATAAATAATCATTAATTTTAAAAAAAAAAAAATATT‑AAAAATTTGTTTTTT‑TTtataa                >  2:1171894/1‑127 (MQ=255)
                                                                                                                ttttATT‑T‑ACAA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTtat                  <  2:937716/128‑1 (MQ=255)
                                                                                                                 tttatt‑t‑tatA‑TT‑‑‑‑T‑‑‑‑‑AA‑AA‑AAAAAAAAAATTA‑‑TA‑‑‑TAATTTTCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTAtatt               <  2:520769/128‑1 (MQ=255)
                                                                                                                 tttatt‑t‑aCTA‑TT‑‑‑‑GA‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATAATATAAAAAATTTTTTTTCAAAT‑AAGTATTAAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTTTTtata                 >  2:1484038/1‑128 (MQ=255)
                                                                                                                              ttattatttaaaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTAtatta              <  1:1340282/116‑1 (MQ=255)
                                                                                                                                taatatttaaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTAtattatt            <  2:108078/118‑1 (MQ=255)
                                                                                                                                 tattattttaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTAtattatta           <  1:1183909/119‑1 (MQ=255)
                                                                                                                                  tattgaaaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGAATACTATAAAAAATTTTTTTAAAAAT‑AAGTATTCAGGATTAAATTTAAAAACCCAA‑AATTATAAAATGTTGGTTTTTTTTTTTtattttttt          >  1:1715687/9‑126 (MQ=255)
                                                                                                                                  ctattgaaaaa‑aa‑aaaaaaaaaaaaa‑‑TA‑‑‑TAATTTGAATAATATAAAAAATTTTTTTTAAAAT‑AATTATTCAGGATTAAATTTAAAAAACAAATATTTAT‑AAATATTGGTTTTTTTTTTAtattattat          >  1:492540/9‑128 (MQ=255)
                                                                                                                                  ctattgaaaaa‑aa‑aaaaaaaaaaTAA‑‑TT‑‑‑TAATTTGCATAATTAAAAAAATTGTTTTTAAAAT‑AATTATTAAGGATTAAATTAAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTAtattattat          >  2:1269262/9‑128 (MQ=255)
                                                                                                                                  aatatttaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTAtattattat          <  2:1950969/120‑1 (MQ=255)
                                                                                                                                    atttaaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTATATTATTAttt        <  1:290900/122‑1 (MQ=255)
                                                                                                                                    attgaaaaa‑aa‑aaaaaaaaaaTAA‑‑AA‑‑‑TAATTTGCATACAAAAAAAAATTTTTTTTCAAAT‑AATTATTCAGGATAAAATTTAAAAAACCAATAGTTAT‑AAATCTTGGTTTTTTTTTTATATTAtttttt        >  1:1118171/7‑128 (MQ=255)
                                                                                                                                     tttaaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTATATTATTATTTg       <  1:1086605/123‑1 (MQ=255)
                                                                                                                                     attgaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATACTTTAAAAAATTGTTTTTAAAAA‑AAGTATTAAGTATTAAATTTAAAAAACAAAAATTTAT‑AAAAATTGTTTTTTTTTTTTTTTTATTAtttt       >  2:338984/6‑127 (MQ=255)
                                                                                                                                      ttgaaaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATAATATAAAAAATTTTTTTTCAAAT‑AATTATTCAGGATTAAATTTAAAAAACAAAGATTTTT‑AAATCTTGGTTTTTTGTTTATATTATTAttttt      >  1:916414/5‑126 (MQ=255)
                                                                                                                                          aaa‑aa‑aaaaaaaaaaTAA‑‑TA‑‑‑TAATTTGCATAATATAAAAAATTTTTTTTAAAAT‑AATTATTAATGAGTAAATTTAAAAAACAAATATTTAT‑AAATATTGTTTTTTTTTTTTTATTATTATTTGTAttt  >  2:484413/1‑128 (MQ=255)
                                                                                                                                          |                                                                                                                                        
TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑G‑‑‑‑AAA‑AA‑AAAAAAAAAATAA‑‑TA‑‑‑TAATTTGCATACTATAAAAAATTGTTTTTCAAAT‑AAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTAT‑AAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTT  >  CP016816/34819‑35073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.