BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	437881 =	279 (0.310)	134 (0.180)	38/210	39.0	37.6%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	= 437888	210 (0.280)	134 (0.180)	38/210	39.0	37.6%	intergenic (‑192/+230)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 390 total aligned reads displayed.

ATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAA  >  CP016816/437761‑438015

aTTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatat                                                                                                                                   >  1:837123/1‑128 (MQ=255)

aTTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatat                                                                                                                                   >  1:1839604/1‑128 (MQ=255)

 tttttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatata                                                                                                                                  >  2:1459828/1‑128 (MQ=255)

 tttttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatata                                                                                                                                  >  1:1553543/1‑128 (MQ=255)

 tttttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATAATACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatata                                                                                                                                  >  1:1229033/1‑128 (MQ=255)

    ttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatat                                                                                                                               >  2:1909537/1‑128 (MQ=255)

    ttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatat                                                                                                                               >  2:1686888/1‑128 (MQ=255)

    ttGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGAAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatat                                                                                                                               <  1:658514/128‑1 (MQ=255)

     tacaaaaatAAGTTTCATTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatat                                                                                                                               >  1:436647/9‑128 (MQ=255)

      acaaaaatAAGTTTCATTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatata                                                                                                                              >  1:1976680/8‑128 (MQ=255)

        aGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatat                                                                                                                           >  2:629131/1‑128 (MQ=255)

        aGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatat                                                                                                                           >  1:363751/1‑128 (MQ=255)

        aGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatat                                                                                                                           >  2:416103/1‑128 (MQ=255)

             tttttttGA‑TTTTTAATAAATATTTTAAATATAAATTTTATTTTTAAAATAAATATTTTTTTAAATGAATCACAGCTAAAAACTCCATATTAAATATATAG‑‑‑‑TTA‑TT‑‑‑‑T‑‑‑‑‑‑atatatatatatatata‑‑tata                                                                                                                    <  1:142118/124‑1 (MQ=255)

             tAAGTTTAA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATATTATGAAATGAAGCAAAGCAAAAAACTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tata                                                                                                                    <  2:1522940/128‑1 (MQ=255)

              aaGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatat                                                                                                                   >  2:1368390/1‑128 (MQ=255)

               aGTTTCA‑TTTTTAATAAATATTATAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAAAGAATCAAACAAAAAAACTCCATATTACCTATAGAG‑‑‑‑ATA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatata                                                                                                                  <  2:1284648/128‑1 (MQ=255)

                ttttAA‑TTTTTAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatatat                                                                                                                 <  1:629131/127‑1 (MQ=255)

                   taa‑TTTTTAATAAATATTATAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAATATAAAAACTCCATATTACATATAGAG‑‑‑‑ATA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatatatata                                                                                                              <  1:1804043/126‑1 (MQ=255)

                        ttttAATATATATTATAAATTTAAATTGTATTTTTAAAATAAATATTTTTGGAAATGAAGCAAAGAAAAAACCTCAATATTAAATATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatatatatcatta                                                                                                          <  1:216244/128‑6 (MQ=37)

                        ttttAATAAATATTATAAATAAAAATTGTATTTTTAAAATAAATATTTTATTAAATGAAGCAAAGCAAAAACATCCATATTAACTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatatatatatata                                                                                                          <  2:1639315/128‑4 (MQ=255)

                         ttttatatatattttatatataTATTTTATTTTTAAAATAAATATTTTATTTAAACAATAAAACAAAAAAAATATATATAAAATATATAT‑‑‑‑ATT‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatatatatatatat                                                                                                         <  1:243082/128‑5 (MQ=255)

                           atataaattTTATATATAAATTTTTTTTTTTTAAAATATATTTTTTTTTATATTAAAAAAATAAAAAAACTATATATTATCTATAGAT‑‑‑‑TTT‑TT‑‑‑‑T‑‑‑‑‑‑atatatatatatatata‑‑tatatatatatatatat                                                                                                       <  1:344848/126‑7 (MQ=255)

                            aataaataTTATAAATAAAAATTTTATTTTTAAAATAAATATTTTATTATATGAAGCAAATCAAAAAAATCCATATTAACTATATAG‑‑‑‑ATA‑AT‑‑‑‑T‑‑‑‑‑‑atatatatatatatata‑‑tatatatatatatatatg                                                                                                      <  1:928584/128‑8 (MQ=255)

                            aataaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑atatatatatatatata‑‑tatatatatatatgcaag                                                                                                      >  2:1334012/1‑121 (MQ=255)

                              taaataTTATAAATAAATATTTTATTTTTTAAATAAATATTTTATTATATGAAGATAATCTAAAAACTCTATATTATCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑T‑‑‑‑‑‑atatatatatatatata‑‑tatatatatatatgcaagcg                                                                                                    <  1:1708290/128‑10 (MQ=255)

                                aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCATAGAAAAAACCTCTATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGAt                                                                                                    <  1:895524/128‑1 (MQ=255)

                                 aaataataaaTAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGACGCACATCAAAAAACACTATATAACCTATAGAG‑‑‑‑ATA‑AT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATA‑‑TATATATATATGCAAGCGATCAGCATaaa                                                                                           <  1:1284009/121‑1 (MQ=255)

                                   ataatataTAAAAATTGTATTTTTAAAATATATATTTTATTATATTAATAAAATAAAAAAAATCAATATTTTATATAGAG‑‑‑‑ATA‑ATTA‑‑T‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAg                                                                                                 <  1:1084846/121‑1 (MQ=255)

                                   atTAGATATAAAAATTGTATTTTTAAAATGAATATATTATTAAATGAATCAAAGCAAAAAACTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAg                                                                                                 <  2:252966/128‑1 (MQ=255)

                                    ttATAAATAAAAAATGTATTTATAAAAAAAATATTTTACCAAATCAACCAAACAAAAAACCTCCAAATTACCAATAGAT‑‑‑‑TTA‑AT‑‑‑‑T‑‑‑‑‑‑ATATATATATATATATA‑‑AATATAAATATGCAAGCGATCACCAt                                                                                              <  1:1457719/128‑1 (MQ=255)

                                     tatataTAAAAATTGTATTTTTAAAATAAATATATTAGGAAATTAACCATAGATAAAACCTCTAAATAATCTATATAG‑‑‑‑TTA‑AT‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAAt                                                                                         <  2:476007/123‑1 (MQ=255)

                                     tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAAAGAATCAAAGCAAAAACCTCCTTATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATa                                                                                             <  2:210225/128‑1 (MQ=255)

                                      aGAAATAAAAATAGTATTTTTATAATAAATATTTTAGGAAATGAAGCAAAGAAAAAACATCCATATTAAATATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATaa                                                                                            <  2:109033/128‑1 (MQ=255)

                                       tataTAAAAATTTTATTTTTAAAATATATATTTTATGAAATGAATCAAAGCAAAAAACTCCATATTAACTATAGAG‑‑‑‑TTA‑TT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATa                                                                                             <  1:1017542/125‑1 (MQ=255)

                                       gAAATAAAAATTGTATTTTTAATAAAAATATTTTAGGAAATTAATAAAATAAAAAAACTATATATTATCTATAGAT‑‑‑‑TTA‑ATTA‑‑T‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATa                                                                                             <  2:455923/128‑1 (MQ=255)

                                        aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATaaaa                                                                                          <  2:1794365/128‑1 (MQ=255)

                                        aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGAATaaaa                                                                                          >  2:844143/1‑128 (MQ=255)

                                            ataaaTTGTTTTTTTAAAATAAATATTTTATTAAATTAAGCAAAGAAAAAAACTCAATATAACATATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATAT‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATaaaa                                                                                          <  2:436733/126‑1 (MQ=255)

                                                    tATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATTTGCACGAGATCAGCATAAAATGGTGAAATTTa                                                                              >  1:744769/1‑128 (MQ=255)

                                                     aTTTTTATAATATATATTTTATTAAATTAATCAAATAAAAAAAATCCATATAATATATAGAGATATTTATATA‑‑‑T‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGaa                                                                                   <  2:601852/128‑1 (MQ=255)

                                                     aTTTTTAAAATATATATTTTATTAAATTAATATAAGAAAAAACATCAATATTATCTATAGAG‑‑‑‑TTA‑ATTATAT‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAAt                                                                                 <  1:1571010/128‑1 (MQ=255)

                                                      tttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGAGATCAGCAAAAAATGGTGTAATTTa                                                                              >  1:1790298/1‑128 (MQ=255)

                                                      tttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGCTCAGCATAAAATGGTGAAATTTAGa                                                                            >  2:1229250/1‑128 (MQ=255)

                                                         ttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATAT‑‑ATATATATATATATATA‑‑TATATATATATAAAAGCTATCATCATAAAATGGTGATATTTAg                                                                             >  2:1435218/1‑128 (MQ=255)

                                                          taaaataaaaATTTAATTAAATCAATAAAAGAAATAAACTCCATATTACATATAGAG‑‑‑‑TTA‑TT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTg                                                                        <  2:1005421/128‑1 (MQ=255)

                                                          tAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTg                                                                        >  2:768515/1‑128 (MQ=255)

                                                            aaatatatATTTTATTAAATGAATCAAAGCAAAAACCTCTATATTACATATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATATATATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGa                                                                            <  2:654303/128‑1 (MQ=255)

                                                                aaataTTTTAGTAAATTCATCTAAGACAACACCTTAAAATTTCCTATTGAT‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATATTTATATATTTATGCAATCGCTCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                                    <  2:1775028/128‑1 (MQ=255)

                                                                aaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                                    >  2:35009/1‑128 (MQ=255)

                                                                aaataTTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGATAGCGATCAGCAATAAATTGTGAAATTTATATCTgttattg                                                                  >  2:373817/1‑122 (MQ=255)

                                                                 aataTTTTATGAAATGAATCAAATATAAAACCTCCATATTAACTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATAT‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGt                                                                     <  2:292268/128‑1 (MQ=255)

                                                                  atatTTTAGGAAATGAAGCAAAGCAAAAACATCAATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                            <  2:1506450/128‑1 (MQ=255)

                                                                  atatTTTAGCAAATCAACCAAACAAAAAACCTCCATATTATCTCTAGAG‑‑‑‑TTA‑TT‑‑‑‑GATAT‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                                    <  2:556253/128‑1 (MQ=255)

                                                                   tatTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGAAAGCGATCAGCATAAAATTGTGATATTTAGATCTGATTTGGtat                                                               >  2:271386/1‑126 (MQ=255)

                                                                   tatTTTAGGAAATGAAGCAAAGAAAAAACCTAAATATTACATATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCt                                                               <  2:690364/128‑1 (MQ=255)

                                                                       ttAGTAAATTAAGCAAAGCAAAAAAATCAATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                           <  2:1204829/128‑1 (MQ=255)

                                                                        tAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTAAAtagat                                                      >  2:15497/1‑124 (MQ=255)

                                                                               tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATAT‑‑ATATATATATATATATA‑‑TATATATATATGCAAGAGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAAtttc                                                       >  2:1828507/1‑127 (MQ=255)

                                                                                 aagcaaagcaAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATATATATATATATATATATATA‑‑TATATATATATGATAGCGATCAGAATAAAATTGAGAAATATATATATGAGTTGGTCTAATATTTg                                                       >  2:241389/1‑128 (MQ=255)

                                                                                    caaatcaaaAACCTCTATATTACCTATAGAG‑‑‑‑TTA‑TT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtttt                                                <  1:1674443/128‑1 (MQ=255)

                                                                                       agcaaaAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGAAAGATATCAGCATAAAATGGTAATATTTATATCTGAGTTTGTCTTATATTTTTTTTTtttat                                             >  1:407365/1‑128 (MQ=255)

                                                                                         aaaaaaaatctctatTAACTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTttatttat                                         <  2:1739657/116‑1 (MQ=255)

                                                                                         aaaaaaCCTCTATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattt                                           <  1:1171085/127‑1 (MQ=255)

                                                                                            aaaCCTAAATATTACCTATAGAG‑‑‑‑ATA‑AT‑‑‑‑G‑‑‑‑‑‑‑‑ATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGttt                                    <  1:731126/128‑1 (MQ=255)

                                                                                             aaCCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATAT‑‑ATATATATATATATATA‑‑TATATATATATTAAAGCTATCAACATAAAATGGTGATATATATATATGAGTTTGTATAAAATTTTTATTTTttatatat                                         >  2:1181766/1‑128 (MQ=255)

                                                                                              aCCTCAATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑‑‑ATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTtat                                  <  1:350803/128‑1 (MQ=255)

                                                                                                  ccATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATATATATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGAAAAAAATTGTGATATATAGATCTGAGTTTGTCTTAAATTTGTATTTTATATTTATAGt                                      >  1:555880/1‑128 (MQ=255)

                                                                                                  ccATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GATAT‑‑ATATATATATATATATA‑‑TATATATATATGATAGAGAGAAGAATAAAATGGTTAAATTTAGATCTGAGTTGGTCTTTAATTTTTATTTTTTATTTATAGttt                                    >  1:1189242/1‑128 (MQ=255)

                                                                                                  ccATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATTAAAGCGATCAGAAATATATTGTGAAATTTAGATCTGTGTTGGTCTTAATTTTCTAGTTTTAATTTAGAGTTtat                                  >  1:1330271/1‑128 (MQ=255)

                                                                                                  ccATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAATCGCTCAGCATAAAATGGTGAAATATAGATCTGAGTTGGTCTTAAATTTGTAGATTATATATATAgataat                                  >  2:1115685/1‑123 (MQ=255)

                                                                                                      atTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATAT‑‑‑T‑CAAGCGATCATAATAAAATGGTGAAATATAGATCTGAGTTTGTCTTAAATATGTAGTTTATATTTATATTAAATAAAGTtaata                        >  2:974189/1‑128 (MQ=255)

                                                                                                       ttACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATTCAAGCGATCATAATAATATTGATAAATATATATGTGATTTGATCATAAATTTTTATTTTTTATTTATATTATATaattt                             >  2:1417625/1‑125 (MQ=255)

                                                                                                       ttACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑GAT‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGGTGGTCTTAATTTTGTAGTTTTTATATATATTTTATAATGt                             >  1:1526425/1‑128 (MQ=255)

                                                                                                        tACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGAGATCAGAATAAAATTGTTATATTTATATCTGATTTTTTCTTAAATTTGTAGTTTATATTTATAGTTTATAAAGTtaa                          >  2:1972794/1‑128 (MQ=255)

                                                                                                         aCCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTtaat                         >  1:1892705/1‑128 (MQ=255)

                                                                                                         aCCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATAATAATAAAATAGTTAAATTTAGATCTGAGTTTGTCTTAAAATTATAGATTATATATATAGTTTATAAAGAtaat                         >  2:827075/1‑128 (MQ=255)

                                                                                                                       ttA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATTCAAGCGATCAGCATAAAATTGTGAAATTTATATCTGAGTTTGTCTTAAATTTGTATTTTTTATATATATTTTATAAATTTAATAATTTATAtt               >  1:1389858/1‑128 (MQ=255)

                                                                                                                           aT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAttttt            <  2:1873220/128‑1 (MQ=255)

                                                                                                                                  tgatatatatatatatatatata‑‑tatatatatatGAAAGCTAAAAGCATAAAATAGTGAAATTTAGATATGAGTTTGTATTAAATTTTTATTTTTTATTTATATTTTATAAATTAAATAATTTATAtt               >  1:259119/7‑128 (MQ=255)

                                                                                                                                  tgataaatatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt               <  1:1413756/122‑1 (MQ=255)

                                                                                                                                  atatatatatatatatatatata‑‑tatatatatatTCAAGCTATCAGCATAAAATTGTGAAATTTATATCTGAGTTTGTCTTAAATTTTTATTTTTTATTTATAGTTTATAAATTTAATAATTTATAtt               >  1:496993/7‑128 (MQ=255)

                                                                                                                                  atatatatatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtt               <  1:876573/122‑1 (MQ=255)

                                                                                                                                   tatatatatatatatatatata‑‑tatatatataaACAAGCTCACAACAAAATATGGATATATATATATCAGATTTTATATAAAATTTGTATTTTTTATATAGTTTATATAAATTAAATATTTTattttt              >  1:7645/6‑123 (MQ=255)

                                                                                                                                   cttgcatatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTATTTTTGTAGTTTTTATTTATAGTTTATTATTTTATTAATTTAGAttt              >  2:89006/6‑128 (MQ=38)

                                                                                                                                    ttaatgatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGCTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGAtttt             <  1:1739140/122‑1 (MQ=255)

                                                                                                                                      atatatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATATAGATTTTTa           >  1:1101765/3‑128 (MQ=255)

                                                                                                                                      aatgatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTa           <  2:1763981/124‑1 (MQ=255)

                                                                                                                                        atatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGTTATTATATTTTTAGTTTTTATTTATATTTTTTAAATTTAATAATTTATATTTTTAat         >  1:805327/1‑128 (MQ=255)

                                                                                                                                         tatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTATATTTTTAGTTTTTATTTATATTTTATATAGTTAATAATTTATATTTTTAata        >  1:1600199/1‑128 (MQ=255)

                                                                                                                                         tatatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAata        <  2:878233/128‑1 (MQ=255)

                                                                                                                                          atatatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGATAAATTTAGATCTGAGTTGGTCTTAAATTTTTATTTTTTATTTATATTTTATAAAGTTTATAATTTAGATTTTTAatat       >  1:701346/1‑128 (MQ=255)

                                                                                                                                             tatatatatata‑‑tatatatatttGCTCGCGATCTGCATATTATGGTGATATTTAGATCTGTGTTGGTGTTATATTTGTTGTTTTTTTTTATAGTATTTATAGTTATTATTTTAGATTTTTATTAtttt    >  2:1949534/1‑128 (MQ=255)

                                                                                                                                             tatatatatata‑‑tatatatatatTCAAGCGATCAGCATAAAATTGTTAAATTTATATCTGTGTTGGTCTTAAATTTTTAGTTTTTATTTATATTTTATAAAGTTAATAATttatattttttatatttt    >  1:1001540/1‑128 (MQ=255)

                                                                                                                                             tatatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATAtttt    <  2:1593306/128‑1 (MQ=255)

                                                                                                                                              atatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTa   <  1:1953410/128‑1 (MQ=255)

                                                                                                                                              atatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTa   <  1:966362/128‑1 (MQ=255)

                                                                                                                                               tatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaa  <  1:1922839/128‑1 (MQ=255)

                                                                                                                                               tatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaa  <  2:721867/128‑1 (MQ=255)

                                                                                                                                               tatatatata‑‑tatatatatatGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTaa  <  2:1396733/128‑1 (MQ=255)

ATTTTTGTAGTTGTAAGTTTCA‑TTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAG‑‑‑‑TTA‑AT‑‑‑‑G‑‑‑‑‑‑ATATATATATATATATA‑‑TATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAATATTTTAA  >  CP016816/437761‑438015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.