BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	420,253	0	C	A	39.5%	606.5 / 163.3	563	intergenic (‑536/+307)	JCVSYN2_01895/JCVSYN2_01900	30S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base C (117/212); new base A (183/32); total (302/261)
Fisher's exact test for biased strand distribution p-value = 7.47e-32
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 573 total aligned reads displayed.

AAACTACTAGCACTTTTTTAAAAAATTTAAAATTA‑AAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420129‑420378

aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACaaaa                                                                                                                           >  1:1614602/1‑128 (MQ=255)

aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTATATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACaaaa                                                                                                                           >  1:1492987/1‑128 (MQ=255)

  tataatattaattttttAAAAATTTTTTAATTT‑TAATAAATTTATTATTTTTTAAATTTTTATATTATTTTAAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACaaaaa                                                                                                                          <  2:550193/117‑1 (MQ=255)

  actattatatattttttAAAAAATTTTTAATTT‑TAATAAATTAATTATTTTTAAAATTTTTAAATTTTTTTAAAATAA‑TTATATATTAATAAATTTTTTG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAat                                                                                                                         <  2:1445734/117‑1 (MQ=255)

  actactAGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAat                                                                                                                         >  1:1201043/1‑128 (MQ=255)

  aataatatcacaTTTTTAAAAAATTTTTATTTATAAATAAAT‑AATTATTTTTTAAATTGTTAAAATATTTTCAAAAAA‑ATATTTATTTATTAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACaaaaa                                                                                                                          <  2:729035/120‑1 (MQ=255)

   ctactaGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTAa‑aaaaaaaa                                                                                                                         >  1:414912/1‑127 (MQ=255)

    tactaGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑AAAAAAatat                                                                                                                       >  2:432793/1‑128 (MQ=255)

    tactaGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTA‑AAAAAAatat                                                                                                                       >  2:1418735/1‑128 (MQ=255)

      ctaTCACTTTTTTAAAAAATTTTTAATTT‑TAATAAATTAATTATTTTTTAAATTTTTAAATTTTTTTCAAATAA‑TTATATATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAAtata                                                                                                                      <  2:1389573/128‑1 (MQ=255)

      caagaaattttttAAAAAATTTTTTATTT‑TAATACATGAATTATTTTTAAAATTGTTAAATTATTTTAAAATCA‑ATATATAATAATCAAATTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATaa                                                                                                                     <  2:1776374/121‑1 (MQ=255)

      atattaattttttAAAAAATTTTTTATTT‑TTATTAATTATTTATTTTTTAAATTTTTTAAATATTTTTTAATAA‑TTTTCTATTAATAAATTTTTTT‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATaa                                                                                                                     <  1:1551397/121‑1 (MQ=255)

       tataaattttttAAAAAATTTTTTATTT‑TTATAAATTTTTTTTTTTTTAAATTTTTATATTTTTTTAAAATAA‑TTATTTATTAATAAATTTTTTT‑GTT‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATaa                                                                                                                     <  1:178590/122‑1 (MQ=255)

        atatattttttAAATAATTTTTAATTT‑AAATAAATTAATAATTTTTAAAATTTTTTAATTTTTTTAAAATAA‑TTTTTTATTAATAAATTTTATT‑ATT‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAat                                                                                                                    <  2:334509/123‑1 (MQ=255)

        aGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTCTT‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATaa                                                                                                                     >  2:483944/1‑128 (MQ=255)

        aGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑AAAAAAATATAatt                                                                                                                   >  2:1642145/1‑128 (MQ=255)

        aGCACTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑‑TTTTTTTT‑TTTTTTT‑ACAAAAAAATAattt                                                                                                                  >  1:851486/1‑128 (MQ=255)

         ttaattttttAAAAAATTTTTTTTTT‑TAATAATTTAATTTTTTTTAAAATTTTTAAATTTTTTTTAAAAAA‑TTATTTATTAATTATTTTTTTT‑GTT‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAatt                                                                                                                   <  1:538630/124‑1 (MQ=255)

           tattttttAAAAATTTTTAATTTT‑TAAAAATTTAATT‑TTTTTTAAATTTTTTAAATATTTTATAATTATTTATTTTTAAAATATTTTTTTT‑CTG‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAattta                                                                                                                 <  1:584974/126‑1 (MQ=255)

           aCTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑AAAAAAATATAatttat                                                                                                                >  2:1076442/1‑128 (MQ=255)

            catttttAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTTATTTTTAT‑AAAAAAatataatata                                                                                                                 >  1:1917970/3‑128 (MQ=255)

            cTTTTTTAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTA‑AAAAAAATATAatttat                                                                                                                >  2:1889101/1‑128 (MQ=255)

             ttttttAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑GTTTTTTTTTTT‑TTTTTTT‑ACAAAAATATAatttat                                                                                                                >  2:1545018/1‑128 (MQ=255)

              tttttAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATT‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑AAAAAAATATAatatttatt                                                                                                             >  1:1013009/1‑121 (MQ=255)

              tttttAAAAAATTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑AAAAAAATATAatttatttt                                                                                                             >  2:458464/1‑127 (MQ=255)

                    taaaaTTTTTAATTT‑TAATAAATTAATTATTTTTCAAATTGTTAAATTATTTTAAAATAA‑TTATATATTAATAAATTTTATG‑CTT‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTaaa                                                                                                       <  1:441866/127‑1 (MQ=255)

                    aaaaaTTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTTATTaaa                                                                                                       >  1:1901027/1‑128 (MQ=255)

                     aaaaTTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTTATaaaa                                                                                                       >  1:971742/1‑128 (MQ=255)

                      aaaTTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑GTTTTTTTTTTT‑TTTTTTT‑AAAAAAAAATAATTTATTTTATTaaa                                                                                                       >  1:1851398/1‑128 (MQ=255)

                      aaaTTTTTAATTT‑TAATAAATTAATTATTTTTTAAATTGTTTAATTAATTTAAAATAA‑TTATTTTTTTAAAAATTTTATG‑GTA‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAAc                                                                                                      <  1:1249936/128‑1 (MQ=255)

                       aaTTTTTAATTT‑TAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTAATTAAAct                                                                                                     >  2:1908922/1‑127 (MQ=255)

                       aaTTTTTAATTT‑TAATAAATTAATTATTTTTAAAATTGTTAAATTATTTTAAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGt                                                                                                    <  1:1658665/128‑1 (MQ=255)

                         atttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTTATTAAACTta                                                                                                   >  2:83445/13‑128 (MQ=255)

                          tttttaattttaatAAATTAATTATTTTTTAAATTTTTAAATTATTTTTAAATCA‑TTATCTATTAATCAATTTTATT‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGtat                                                                                                  <  2:1690014/117‑1 (MQ=255)

                          tttttaatattaatAAATGAATTATTTTTCAAATTTTTAAATTATTTTAAAATAA‑TTATTTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGta                                                                                                   <  2:1568868/117‑1 (MQ=255)

                           tttttattttaatTACTGTATTTTTTTTTAAATTTTTAAATTTTTTTAAAAAAA‑TTTTCTATTAATCAATTTTTTG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGtat                                                                                                  <  1:193521/118‑1 (MQ=255)

                               aattttaatAAATTAATTATTTTTAAAATTTTTAAATTTTTTTCAAATAA‑TTATATATTAATCAATTTTATT‑CTC‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATAttt                                                                                              <  2:1665177/122‑1 (MQ=255)

                                  tttaatatattaaTTTTTTTTTATATTGTTAAATTATTTTAAAATTA‑TTATATATTAATAAATTTTTTT‑TTT‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATg                                                                                           <  1:514475/117‑1 (MQ=255)

                                      tttaattaaTTTTTTTTTAAATTTTTAAATTATTTTTAAATTA‑TTATTTTTTTATTAATTTTTTT‑TTT‑T‑TTTTTTTTTT‑TTTTTTT‑ATAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                       <  1:358033/121‑1 (MQ=255)

                                      atAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATTTTATTTATTTTATTAAACTTAATTTTTTTTTta                                                                                       >  1:1367435/1‑128 (MQ=255)

                                        aaCTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑AAAAAATTATAATTTATTTTATTAAAAGTATATTTATTTTtaata                                                                                    >  1:1390972/1‑128 (MQ=255)

                                         attttatttttTTTTAAATTTTTAAATTATTTTAAAATAA‑TTATTTTTTTATAATTTTTATT‑AT‑‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                   <  2:1201824/123‑1 (MQ=255)

                                         aattaaTTATTTTTAAAATTTTTAAATTTTTTTAAAATTA‑TTTTTTATTAATAAATTTTTTT‑TTA‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                                   <  1:633472/124‑1 (MQ=255)

                                          cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑GTTTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATATGTTTAAAAGTATATTTATGTttatta                                                                                    >  2:935576/1‑128 (MQ=255)

                                               ttattTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAAtt                                                                              >  2:279974/1‑127 (MQ=255)

                                               ttattTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTAATATTATTAAAATAATAATTATTTTTAATAAAAAtt                                                                              >  2:1284871/1‑127 (MQ=255)

                                               ttattTTTAAAATTTTTAATTTATTTTAAAATAA‑TTTTTTTTTATTATATTTTTTT‑TTT‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATg                                                                              <  2:1116768/128‑1 (MQ=255)

                                                tttttttaaattttttaaatTATTTTAAAATAA‑TTATATATTAATTAATTTTTTT‑TTT‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGa                                                                            <  1:902432/126‑1 (MQ=255)

                                                 attTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAAAATAATTTATTTGATTAAACTTATATTTATGTTTAATAAAAATgta                                                                            >  2:1929869/1‑126 (MQ=255)

                                                      tCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑‑TTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTTATTAAACTTATATTTATGTTTAATAAAAATGTAaaagaaa                                                                     >  2:1588632/1‑128 (MQ=255)

                                                       cAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑GTTTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTGATTAAACTTATTTTTATTTTTAATAAAAATTTaaaata                                                                       >  2:1678993/1‑126 (MQ=255)

                                                       cAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑‑TTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTTTATTTATGTTTATTAAAAATGGAaaataaag                                                                    >  1:1078025/1‑128 (MQ=255)

                                                       ataaTTTTTAAATTATTTTTAAATAA‑TTATATATTAATTAATTTTTTG‑‑TT‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaagaaa                                                                     <  2:1614602/126‑1 (MQ=255)

                                                         aaTTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑GTTTTTTTTTTT‑TTTTTTT‑AAAAAAAAATAATTTATTAATTTAAACTTATATTTATTTTTAAAAAAAATACAaaagaaa                                                                     >  2:240166/1‑128 (MQ=255)

                                                         aaTTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTGATTAAAATATTTTTTATTTTTAATAAAAATGTAaaataatt                                                                    >  2:1713378/1‑126 (MQ=255)

                                                           tttttAAATTATTTTTAAATAA‑TTATATATTTATATATTTTATG‑‑TT‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGa                                                                 <  2:687303/125‑1 (MQ=255)

                                                           ttGTTAAATTATTTTCAATTCA‑TTATCTATTATTCATTTTTATG‑CTC‑G‑‑‑TTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTTATTATACGTATATTTATGATTATTTAAAATTGAaaagaatttgta                                                                >  2:1871271/1‑122 (MQ=255)

                                                               tAAATTATTTTAAAATAA‑ATATATATTAATAAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTg                                                             <  2:1041343/128‑1 (MQ=255)

                                                                taaTTATTTTAAAATAA‑TTATATATTAATAAATTTTTTGTTTT‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAAtt                                                              <  1:1039922/127‑1 (MQ=255)

                                                                 aaTTTTTTTTATATTA‑TTATTTTTTTATAAATTTTATT‑TTT‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTc                                                           <  1:1291806/128‑1 (MQ=255)

                                                                  attattTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTTTTTAAAATTATATTTATTTTTAATAAAAATTAAAAATAAATTTAAtttta                                                           >  2:795659/1‑125 (MQ=255)

                                                                  attattTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATTTTTAATAAAAATTTAAAATAAATTTAATTTTCa                                                          >  2:904468/1‑128 (MQ=255)

                                                                      ttttCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑‑‑TTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAAGAAAGTGAATTGTCAtaataa                                                    >  2:694087/1‑128 (MQ=255)

                                                                      ttttCAAATAA‑TTATATATTATTTAAATTTAT‑‑‑TT‑T‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCataata                                                     <  1:1871271/128‑1 (MQ=255)

                                                                         tCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTTTTTTATTAAACTTATTTTTATGTTTAATAAAATTTTAAAAAAAATTTAATTTACAtaataa                                                    >  2:416871/1‑128 (MQ=255)

                                                                            aaTCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTTATTAAAATTAAATTTTTTTTTAAAAAAAAATTAAAAAAAATTGATTTTAAATAAtaattta                                                >  2:748757/1‑128 (MQ=255)

                                                                             aTCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAATTAAATTTTAATAAtaattta                                                >  2:383992/1‑128 (MQ=255)

                                                                               cA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTTAAAAAAAATATAATTTATTTGATTAAACTTATTTTTTTTTTTAATAAAAATGAAAAATAATTTTATTTTTAATAAtaatttat                                               >  1:682608/1‑127 (MQ=255)

                                                                               cA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAAATTATATTTTTTTTTAATAAAAAAGTAAAATAATGTGAATTGTAATAAtaatttaat                                              >  2:347272/1‑128 (MQ=255)

                                                                               cA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTTTTTGATTAAACGTATTTTTATGTTTAATAAAAATGGAAAATAAAGTGATTTGTCATAAtaatttattt                                             >  2:135014/1‑128 (MQ=255)

                                                                                  ttATCTACTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATAAAATTAATTTGATAAAACGTATATTTATTTTTAATAAAAATGTAAAATAATTTTAATTTTAATATTAATttaatta                                            >  2:642584/1‑128 (MQ=255)

                                                                                       tATTAATCAATTTTATG‑CTC‑G‑‑‑TTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGGAAAAGAAAGTTAATTGTAATAATTATTTAATTAAttatat                                     >  2:575017/1‑128 (MQ=255)

                                                                                        aTTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTGATTAAACTTATTTTTATTTTTAATAAAAATGTAAAATAATGTTATTTTTCATAATAATTTAATAAAatata                                      >  1:179773/1‑128 (MQ=255)

                                                                                         ttaattaaTTTTATG‑ATC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAtatata                                    <  2:1746556/128‑1 (MQ=255)

                                                                                         ttAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑AAAAAAATATAATTTATTTTTTTAAAATTATATTTATTTTTATTAAAAATGTAAAAAAAAGTTAATTTTAATAATAATTTAATTAAatattt                                     >  2:1139200/1‑126 (MQ=255)

                                                                                          taataaATTTTTTT‑TTT‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAtatata                                    <  1:1570950/128‑1 (MQ=255)

                                                                                              cAATTTTATG‑CTC‑G‑‑‑‑TTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATttaattaa                                           <  1:1708634/114‑1 (MQ=255)

                                                                                                   tttttttttttttttttttttt‑ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATg                              <  1:1970816/116‑1 (MQ=255)

                                                                                                   ttATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTTTTTGATAAAACGAATATTTATTTTAAATAAAAATGAAAAATAAAGTGATTTTTAATAATAATTTAATTAAATAAATAAAAATTTaa                           >  2:1253725/1‑128 (MQ=255)

                                                                                                     aTG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACTTATATTTATTTTTAATAAAAATGAAAATTAAATTTAATTGTAATAATAATTTAATTAAAAATATAACaatttaattt                        >  2:1496631/1‑128 (MQ=255)

                                                                                                      tG‑CTC‑G‑‑TTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTTTATTTATTTTTAATAAAAATGGAAAATAAAGTTATTTGTAATAATAATTTAATTAAATATATAACAATTTAAGttt                       >  2:970629/1‑128 (MQ=255)

                                                                                                       tttttttttttttttttt‑ttttttt‑ATAAAAATATAATTTTTTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAg                          <  1:339969/120‑1 (MQ=255)

                                                                                                         tttttttttttttttt‑ttttttt‑ACAATAATATAATTTTTTTGATTATTCGTATATTTATGTTTAATATAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtt                        <  1:748757/122‑1 (MQ=255)

                                                                                                           ttatttagtttttt‑ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtttt                      <  1:485533/120‑1 (MQ=255)

                                                                                                           c‑G‑TTTTTTTTTT‑TTTTTTA‑AAAAAAAAAAAATTTATTTTATTAAAGTTTAATTTATTTTTAAAAAAAATGAAAAAAAATTTAAATTTTAATAAAAATTTAATTAATTATAAAAAATTTTAATTTTTaa                    >  2:220241/1‑128 (MQ=255)

                                                                                                            ttttttttttttt‑ttttttt‑ATAATTATATAATTTATTTTATTAAAATTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTAATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  1:1469002/125‑1 (MQ=255)

                                                                                                            ttttttttttttt‑ttttttt‑ACAAAAATATAATTTATTTGATTAAATGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                     <  1:797814/125‑1 (MQ=255)

                                                                                                               tttttttttt‑ttttttt‑ACAAAAATATAATTTTTTTTTTTAAACGTTTTTTTTTGTTTAATAAAAATGTAAAAAAAATTGAATTTTAATAAAAATTTAATTAAATATATAACAATTTAATTTTAaaaa                  >  1:1685506/1‑128 (MQ=255)

                                                                                                                ttttttttt‑ttttttt‑ACTAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                 <  1:243017/128‑1 (MQ=255)

                                                                                                                ttttttttt‑ttttttt‑AAAAAAAAATTATTTATTTGATTAAACTTATTTTTATTTTTAATAAAAATTGAAAAAAAATTAAATTTTAAAAATAATTAAATTAAATAAATAAAAAAGAAATTTTTaaaaa                 >  2:1111972/1‑127 (MQ=255)

                                                                                                                  ttttttt‑ttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt               <  2:1979603/128‑1 (MQ=255)

                                                                                                                    ttttt‑ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttac             <  1:1725118/128‑1 (MQ=255)

                                                                                                                    ttttt‑ttttttt‑A‑AAAAATATTATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact            <  1:1133040/128‑1 (MQ=255)

                                                                                                                          ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  1:183160/128‑1 (MQ=255)

                                                                                                                          ttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  1:1646986/128‑1 (MQ=255)

                                                                                                                          ttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  2:1841072/128‑1 (MQ=255)

                                                                                                                          ttttttt‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt        <  2:180427/128‑1 (MQ=255)

                                                                                                                            ttttt‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg      <  2:1024573/128‑1 (MQ=255)

                                                                                                                             tttt‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGt     <  2:1301945/128‑1 (MQ=255)

                                                                                                                              ttt‑AAAAATATATAATTTATTTGTTTAAACGTATTTTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTTAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt    <  2:1013009/128‑1 (MQ=255)

AAACTACTAGCACTTTTTTAAAAAATTTAAAATTA‑AAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCA‑TTATCTATTAATCAATTTTATG‑CTC‑G‑TTTTTTTTTT‑TTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTT  >  CP016816/420129‑420378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`