Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA40.1% 237.7 / 67.0 222intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (74/56);  new base A (19/68);  total (93/129)
Fisher's exact test for biased strand distribution p-value = 3.41e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 245 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202350‑202608
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aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGATACTCTTGATC‑TATTTTTTTAAATTTTT‑AT‑CTTCACAAAA‑AAAAAAA‑AAAc                                                                                                                                       >  1:510963/1‑128 (MQ=255)
 attagtGAAGTTATTGTAAAAAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACa                                                                                                                                      <  1:1777314/126‑1 (MQ=255)
  gttgtGAAGTTAGTGTAAATATTAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACaa                                                                                                                                     <  1:1124032/125‑1 (MQ=255)
   tattGAATTTAGTTTAAATTATAGATTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATTATGTAGATTCTTGTTATA‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAAt                                                                                                                                    <  1:785544/125‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAAt                                                                                                                                    <  2:415748/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAAt                                                                                                                                    >  2:1768607/1‑128 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑‑AAAAAA‑AAACAATc                                                                                                                                   >  1:1670407/1‑128 (MQ=255)
    tgtgtAGGTAGTTGAAATATTAGATGTAAGGTTAATTAAAATACCTAAAACTTTATAATTTATAAAATGTAGATCCTCGTGCTC‑TATTTTTTTAATTGTAT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATc                                                                                                                                   <  1:1019672/127‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACaaac                                                                                                                                   >  1:140314/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATc                                                                                                                                   <  2:309427/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATC‑TATTTATTTATTTTTTT‑AT‑CATCACAAAT‑Aaaaaaa‑aaaaaaaca                                                                                                                                  >  2:921449/1‑125 (MQ=255)
      tgcaGTTATTGTAAATAATAGAGTTAATGTTCTTTAAAATAACATAAACTTAATAATTCATATTATGTAGATCCTCGTTTTC‑TATTTTTTTTTTTGTTT‑AT‑CTTCACAAAT‑ATAAAAA‑AAACAATccc                                                                                                                                 <  2:62773/125‑1 (MQ=255)
      tGAAGTTATTCTAAATAAAAGATTTAATTTTTATTTAAATACAATAAACTTAATAAATCTTATAATTTAGATACTCGTTATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATccc                                                                                                                                 <  2:1106630/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑Aaaaaaa‑aaaaaaaacaca                                                                                                                               >  2:1716741/1‑122 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCCtt                                                                                                                              <  2:218485/128‑1 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATC‑TATTTTTTTATTTTTTT‑AT‑CTTCACAAAA‑AAAAAAA‑AAACAATcaccata                                                                                                                             >  1:1255214/1‑125 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTTTTT‑AT‑CTTAACAAAT‑Aaaaaaa‑aaaaaaacacaata                                                                                                                             >  1:910128/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAAAAAACCCCtta                                                                                                                             >  1:1837542/1‑127 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATCTAGATCCTCATGATC‑TATTTTTTTATATGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAAAccccaaa                                                                                                                             >  1:1640717/1‑125 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCATATAATGTAGATCAACGTGATC‑TATTTTATTATTTGTTA‑AT‑CATAACAAAT‑AAAAAAA‑AAACaaaacaaata                                                                                                                             >  1:1078607/1‑120 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTTTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATAACCttaa                                                                                                                            >  1:690365/1‑126 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCAACTAGATC‑TAATTATAAATATAAAT‑AT‑AATAACAAAT‑Aaaaaaa‑aaaaaaaaaacaaaa                                                                                                                            >  1:401150/1‑119 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑Aaaaaaa‑aaaaaaacacataaaa                                                                                                                           >  2:1043486/1‑118 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAAAAATACCAttaaa                                                                                                                           >  1:616471/1‑125 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATACCAttaaaa                                                                                                                          >  1:1797177/1‑124 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATAACCttaaaa                                                                                                                          >  2:1868076/1‑124 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAAATCATATAATGTAGATCCTCGTGATC‑TATAATTTAATTAGTAT‑AT‑CTTCACAAAT‑Aaaaaaa‑aaaaaaaaccaataaaa                                                                                                                          >  2:459936/1‑117 (MQ=255)
              gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCTTGATC‑TATTTTTTTATTTTTTT‑AT‑ATTCACAAAT‑Aaaaaaa‑aaaaaaaaacataaaaaa                                                                                                                         >  2:9420/1‑116 (MQ=255)
               tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCATATAATTTATATCCTAGTTATC‑TATATTTTAATTTATAT‑AT‑ATTAAAAAAT‑AAAAAAA‑AAAAAAtaaaattaaaaat                                                                                                                        >  2:768918/1‑116 (MQ=255)
                gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATC‑TATTTTTTTATTTGTTT‑AT‑ATTCACAAAT‑AAAAAAA‑AAACAATCCCAttaaaaatt                                                                                                                       >  1:1027236/1‑121 (MQ=255)
                       ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATC‑TATTTATTTATTTCTTT‑AT‑ATTCACAAAT‑AAAAAAA‑AAAAAAAACAC‑‑taaaa‑‑aaataaaaaaa                                                                                                            >  1:350486/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCAAC‑‑TTAAA‑‑AATTaaaaaaaa                                                                                                           >  2:1680811/1‑128 (MQ=255)
                          tagTTAAGGTTAATTAAAATAACATAAAATTAATAATTCTTAAAATGTCTATCCTCGTGTTT‑TTTTTTTTTTTTTTTTT‑AT‑CTTCAAAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaa                                                                                                         <  1:1504287/127‑1 (MQ=255)
                           agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAAAAATCACC‑‑TTAAA‑‑AATTaaaaaaaaaaa                                                                                                        >  2:456729/1‑128 (MQ=255)
                            gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaa                                                                                                       >  1:1666529/1‑128 (MQ=255)
                             ttatagTTATTTAAATTAACATAAAATTAAAAATTCATAAAATTTACTACCTCCTGTTA‑TATATTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaa                                                                                                      <  2:1014160/123‑1 (MQ=255)
                              taattttaattaaAAAAACAAAAAATTAAAAAATATAAAAAATTATATACTAGTTATT‑TATTTTTTTATTTTTTT‑AT‑ATTAACAAAA‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaa                                                                                                     <  2:1157315/123‑1 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaa                                                                                                     >  2:234450/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑‑AAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                    >  2:1586800/1‑128 (MQ=255)
                               aatgTTAATTAAAATACAATAAATTTAATAATTCTTATAATGTATATCCTCGTTTTT‑TATTTTTTTATTTTTTT‑AT‑ATTAAAAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaa                                                                                                    <  1:1685004/125‑1 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTATTTTATTAGTTT‑AT‑ATTAACAAAT‑AAAAAAA‑AAACAAACAAATAaaaaa‑‑aaaaaaaaaaaaaaaaa                                                                                                      >  1:564032/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTAGATCATCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAAACACC‑‑TAAAA‑‑AAATaaaaaaaaaaaaaaa                                                                                                    >  1:1516303/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCAC‑‑AATAAA‑‑AATTaaaaaaaaaaaaaaaa                                                                                                   >  1:227837/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAATAAACAATCCCC‑‑ATAAA‑‑AATTaaaaaaaaaaaaaaaa                                                                                                   >  1:224989/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑‑TAAA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                 >  1:840035/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCAAT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaac                                                                                                 >  2:1285010/1‑127 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATACAATT‑‑‑AA‑‑AAATaaaaaaaaaaaaaaaaaa                                                                                                 >  2:174031/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTGATC‑TATTTTTTTATTTGTTA‑AT‑CTTCACAAAT‑AAAAAAA‑AAAAAAAACCC‑‑ATAAA‑‑AAATaaaaaaaaaaaaaaaaa                                                                                                  >  1:1299531/1‑128 (MQ=255)
                                  ttactataaAATACCAAAAAATTTATAAATGTTATTATCTCTCTCCCCG‑GTTCTTATTTTTTTTATTTTTT‑TT‑CTTAAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaa                                                                                                 <  1:1011096/122‑1 (MQ=255)
                                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaa                                                                                                 >  1:247072/1‑128 (MQ=255)
                                   ttttataaAATAACATAAATTTATAAATTCTTATAAAGTATATCCTTGTGATT‑TATTTTTTTTTTTTTTT‑TA‑ATTTACAAAA‑AAAAAAA‑AAAAAATCCCCTTT‑‑AA‑‑AATTaaaaaaaaaaaaaaaaact                                                                                                <  1:1374934/123‑3 (MQ=255)
                                   ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaa                                                                                                >  2:1815945/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAAAAATCAC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:1561882/1‑128 (MQ=255)
                                    taattaaAATACCAAAAACTTAATAATTATTATAATGTAGATCCTCTTGATC‑TATTTTATTATATTATT‑AT‑CTTAAAAAAT‑AAAAAAA‑AAAAAATAAAC‑‑TTAAA‑‑AAATaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:438691/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:1480540/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAAAAAAACC‑‑ATTAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:968105/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTATTATAAAGTAGATCCTCGTGATC‑TATTTTTTTATATTTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATACAC‑‑TAAAA‑‑AATTaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:929606/1‑128 (MQ=255)
                                         aaaaaaACATAAAAATTATAATTATTATAATTTATATACTTTTGTTA‑TATTTTTTTATTTTTTT‑AT‑CTTAACAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                          <  2:1797177/128‑1 (MQ=255)
                                         aaaaTACAAAAAACTTATAATTTATTATTAAGAATATCCTCTTGATA‑TATTTTTTTATTTGTTT‑AT‑AATCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTaaaaaaaaaaaaaaaaactaaaaac                                                                                          <  2:631363/128‑9 (MQ=255)
                                          aattACCATAAAATATATAATTATTATAATGTATATCATCTTTATT‑TATTTTTTTATTTTTTA‑TT‑TTTAAAAAATAAAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                          <  2:1624467/125‑1 (MQ=255)
                                              aaaaaaaaaaaaataaaTCTTATAAATTATATCATCTTTATA‑TATTTTTTTATTTTTTT‑AT‑ATTAACAAAT‑AAAAAAA‑AAA‑AATCCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                   <  2:693429/117‑1 (MQ=255)
                                               caaTAAAATTAATAAATATTAAAATTTATATAAAAGTTATC‑TATTTTTTTTTTTTTTT‑AA‑ATTAAAAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                    <  2:1647290/126‑1 (MQ=255)
                                               aaaTAAACTTAATAATTATTAAAATTTATAAAATTGTTATA‑TATTTTTTTATTTTTTT‑AA‑AATAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaaac                                                                                  <  2:1347007/126‑1 (MQ=255)
                                                  taaaaataataataaTTATAAATTATATAGTAGTTATA‑TATTTTTTTAATTTTTT‑AT‑ATTAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑TTAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                               <  2:1953282/122‑1 (MQ=255)
                                                  tAAACATTATAAATTTTTTAATTTTCATACTCGGTATC‑TATTTTTTTATTTTTTT‑AT‑CTTCAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:1564429/128‑1 (MQ=255)
                                                  tAAAATTAATAATTCTTATAATTTTTATAAAAGTTATA‑TTTTTTTTTTTTTTTTT‑AA‑ATTAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AA‑‑AAAT‑TTAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                               <  2:232710/128‑1 (MQ=255)
                                                   aaaatataaaatTATTATAATTTATATCCACGTGTTA‑TATTTTTTTTTTTTTTT‑AT‑ATT‑AAAAAA‑AAAAAAA‑AAAAAAACCCCAT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:1739898/119‑1 (MQ=255)
                                                     aattAATAAATCTTATAATTTATAACCTAGTTATT‑TATTTTTTTATTTTTTT‑AT‑TTTAAAAAAA‑AAAAAAA‑AAAAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  2:1597478/126‑1 (MQ=255)
                                                     aCTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAA‑AAAaaacaaacacaat                                                                             >  1:1768285/1‑123 (MQ=255)
                                                       ttAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACTATAtta                                                                           >  2:205763/1‑127 (MQ=255)
                                                        taataaTTTTTAAAATTAATATACTCTTTATA‑TATTTTTTTTTTTTTTT‑AT‑ATTAAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                          <  2:518838/128‑1 (MQ=255)
                                                         aaaaatTATTATAATTTATATAATCTTTATA‑AATTTTTTTATTTTTTA‑AT‑AATAAAAAAA‑AAAAAAA‑AAAAAATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                        <  2:118215/125‑1 (MQ=255)
                                                                       tttataTCCTCGTTATA‑TATTTTTTTATTTTTTT‑AT‑CTTAAAAAAT‑AAAAAAA‑AAA‑AATACCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                        <  2:1670407/123‑1 (MQ=255)
                                                                        gtacatacgagTGATA‑TAATTTTTTATTTTTTT‑AT‑CATAAAAAAA‑AAAAAAA‑AAACAATCCCC‑‑ATAAA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                        <  2:1275591/118‑1 (MQ=255)
                                                                                aatagttattttttttttattttttt‑aTAATTAAAAAAA‑AAAAAAA‑AAAAAAAACCCTTAAAAA‑‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                       <  2:1299531/117‑1 (MQ=255)
                                                                                  ttttatttatttttttattttttT‑AT‑ATTAAAAAAT‑AAAAAAA‑AAAAAATCCCATT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  2:1357327/121‑1 (MQ=255)
                                                                                    tttatatattttttATTTTTTTAAT‑ATTAAAAAAA‑AAAAAAA‑AAAAAATAACC‑‑‑TAAA‑‑AAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                               <  2:1220735/120‑1 (MQ=255)
                                                                                    ttaaatatttttttattttttT‑AT‑AAT‑AAAAAA‑AAAAAAA‑AAAAAATACCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                            <  2:386644/123‑1 (MQ=255)
                                                                                    taattattttttttATTT‑TTT‑AA‑ATAAAAAAAA‑AAAAAAA‑AAAAAAACCC‑‑‑ATAAA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  2:1884591/121‑1 (MQ=255)
                                                                                      atatATTTTTTTTTTTTTTT‑TT‑ATTTAAAAAT‑AAAAAAA‑AAAAAATACCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  1:199456/125‑1 (MQ=255)
                                                                                       c‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAATAA‑‑AAAAAAAAA‑‑ATATTTATTAAAATTACATATTAAAACACATTTTATTTTTa                                        >  2:1526049/1‑128 (MQ=255)
                                                                                        atATTTTTTTATTTGTTT‑AA‑ATTAAAAAAA‑AAAAAAA‑AAAAAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                            <  2:1659166/127‑1 (MQ=255)
                                                                                         tttttttttattttttt‑aA‑ATTCAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                         <  1:1843420/126‑1 (MQ=255)
                                                                                         tATTTTTTTTTTTTTTT‑AT‑TTTAAAAAAT‑AAAAAAA‑AAAAAAAACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  2:260855/128‑1 (MQ=255)
                                                                                          tttttttttttttttT‑AT‑TTTAAAAAAA‑AAAAAAA‑AAAAAAACCCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  1:1179874/127‑1 (MQ=255)
                                                                                           tttttttattttttt‑aT‑ATTAAAAAAA‑AAAAAAA‑AAAAAAACCAC‑ATAAAA‑‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  1:434935/128‑1 (MQ=255)
                                                                                              tttttttttttt‑AT‑ATTAACAAAT‑AAAAAAA‑AAAAAATTCACTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:1610217/128‑1 (MQ=255)
                                                                                              ttttATTTTTTT‑AT‑CTTAAAAAAA‑AAAAAAA‑AAACAATCCACTT‑‑‑AA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:1782623/128‑1 (MQ=255)
                                                                                               ttttttttttt‑tT‑CTTAAAAAAT‑TAAAAAA‑AAACAATTCACTTT‑‑‑A‑‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:1378/128‑1 (MQ=255)
                                                                                                ttATTTTTTT‑AT‑AATAAAAAAT‑AAAAAAA‑AAAAAAATCCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:1837148/128‑1 (MQ=255)
                                                                                                          ttaatttaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑TTT‑‑A‑‑AAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                         <  2:510963/118‑1 (MQ=255)
                                                                                                          ttaattaaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑TTT‑AA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                           <  2:1436132/118‑1 (MQ=255)
                                                                                                            atattaaaaaaa‑aaaaaaa‑aaaaaaaACCC‑‑TTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                          <  1:234450/120‑1 (MQ=255)
                                                                                                              ataaacaAAA‑AAAAAAA‑AAAAAAATCC‑‑ATTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                        <  2:1505660/124‑1 (MQ=255)
                                                                                                                tCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAACAAAAAAAACAAAATATATTAATAAAAATTACATATTAAACACAATTTTTTTTTTAAAAAAATATTTTgcaaaa                      >  1:1699675/1‑123 (MQ=255)
                                                                                                                  aaaaaa‑aaaaaaa‑aaaaaATCCCATT‑‑‑AA‑‑AAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATACCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                 <  2:105607/126‑1 (MQ=255)
                                                                                                                       aaaaaaaaa‑aaaCAATACCCTT‑‑‑AA‑‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata               <  2:1932995/126‑1 (MQ=255)
                                                                                                                               a‑aaaCAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAATAAATTTATTAAAATTCCAAATTTAAACACATTTTTTTTTTAAAATAATATATTTACATAatatatataatata        >  2:1894514/1‑122 (MQ=255)
                                                                                                                                  aaCAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAAATCTTTTTATTAAAATACCATTTTAAACCAAATTTTTTTTTTAAAATAAAATATTGAAATAATATATAAataataatta    >  2:1491870/1‑124 (MQ=255)
                                                                                                                                    cAATCCCC‑‑TTAAA‑‑AATTAAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAACACAATTTATTAAAATTCACTATTATACCAAATTTTTTTTTTAAAAAAAGATATTTAAATAAAATATAAATAAtatatata  >  1:1915794/1‑128 (MQ=255)
                                                                                                                                    |                                                                                                                                     
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑AT‑CTTCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAA‑‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202350‑202608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑