BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,485	0	T	.	65.8%	110.6 / 271.0	175	intergenic (+263/‑412)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (10/44); new base . (52/52); total (69/106)
Fisher's exact test for biased strand distribution p-value = 1.34e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01

Only 100 of 190 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAAAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608

 aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCtt                                                                                                                             <  2:516434/128‑1 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAAAAAACCCCtta                                                                                                                            >  1:1837542/1‑127 (MQ=255)

   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTTTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATAACCttaa                                                                                                                           >  1:690365/1‑126 (MQ=255)

    tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATA‑TATTTTTTTATTTGTTT‑ATCT‑TAAAAAAT‑AAAAAAA‑AAACAATCCCCttaaa                                                                                                                          <  1:872262/128‑4 (MQ=255)

     aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATACCAttaaaa                                                                                                                         >  1:1797177/1‑124 (MQ=255)

     aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATAACCttaaaa                                                                                                                         >  2:1868076/1‑124 (MQ=255)

               ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATC‑TATTTATTTATTTCTTT‑ATAT‑TCACAAAT‑AAAAAAA‑AAAAAAAACAC‑‑taaaaaaataaaaaaa                                                                                                             >  1:350486/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑‑TAAAAAATaaaaaaaa‑a                                                                                                          >  2:1587451/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCAAC‑‑TTAAAAATTaaaaaaaa                                                                                                            >  2:1680811/1‑128 (MQ=255)

                     ttatagTTATTTAAATTAACATAAAATTAAAAATTCATAAAATTTACTACCTCCTGTTA‑TATATTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaa                                                                                                      <  2:1014160/123‑1 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑ACACAAAT‑‑AAAAAA‑AAACAATCCAC‑‑TTAAAAATTaaaaaaaa‑aaaaaa                                                                                                     >  1:386644/1‑128 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTATTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAACAAC‑‑‑TAAAAAATaaaaaaaa‑aaaaaa                                                                                                     >  2:1947672/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaa                                                                                                     >  2:234450/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑‑AAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaa                                                                                                    >  2:1586800/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTGATC‑TATTTTTTTATTATTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAAAAAAACCATT‑‑‑AAAAATaaaaaaaa‑aaaaaaa                                                                                                    >  1:830069/1‑128 (MQ=255)

                       aatgTTAATTAAAATACAATAAATTTAATAATTCTTATAATGTATATCCTCGTTTTT‑TATTTTTTTATTTTTTT‑ATAT‑TAAAAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaa                                                                                                    <  1:1685004/125‑1 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATATATTTATTTGTTA‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAACCCC‑‑‑AAAAAAATaaaaaaaa‑aaaaaaaa                                                                                                   >  2:1491770/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AAAAATaaaaaaaa‑aaaaaaaa                                                                                                   >  2:1520025/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaa                                                                                                    >  1:1574618/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAAACCAAT‑‑‑AAAAATaaaaaaaa‑aaaaaaaa                                                                                                   >  1:430000/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTAGATCATCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAACACC‑‑TAAAAAAATaaaaaaaa‑aaaaaaa                                                                                                    >  1:1516303/1‑128 (MQ=255)

                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCAC‑‑AATAAAAATTaaaaaaaa‑aaaaaaaa                                                                                                   >  1:227837/1‑128 (MQ=255)

                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAACCCCTT‑‑‑AAAAATaaaaaaaa‑aaaaaaaaa                                                                                                  >  1:986532/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAATAAACAATCCCC‑‑ATAAAAATTaaaaaaaa‑aaaaaaaa                                                                                                   >  1:224989/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaaaa                                                                                                  >  1:1659166/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaaaa                                                                                                  >  1:650679/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATACAATT‑‑‑AAAAATaaaaaaaa‑aaaaaaaaaa                                                                                                 >  2:174031/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGTGATC‑TATTTTTTTATTTGTTA‑ATCT‑TCACAAAT‑AAAAAAA‑AAAAAAAACCC‑‑ATAAAAAATaaaaaaaa‑aaaaaaaaa                                                                                                  >  1:1299531/1‑128 (MQ=255)

                         atttaattaaAATAACAAATAATTTATAATTAATATAATTTAAATACTCGTTTTA‑TATTTTTTTTTTTTTTT‑ATAT‑TAACAAAA‑AAAAAAA‑AAACAAACCCC‑‑ATAAAAATTaaaaaaaa‑aaaaaaaaa                                                                                                  <  2:364313/126‑1 (MQ=255)

                          ttactataaAATACCAAAAAATTTATAAATGTTATTATCTCTCTCCCCG‑GTTCTTATTTTTTTTATTTTTT‑TTCT‑TAAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaaaaa                                                                                                 <  1:1011096/122‑1 (MQ=255)

                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaaaaa                                                                                                 >  1:247072/1‑128 (MQ=255)

                           ttttataaAATAACATAAATTTATAAATTCTTATAAAGTATATCCTTGTGATT‑TATTTTTTTTTTTTTTT‑TAAT‑TTACAAAA‑AAAAAAA‑AAAAAATCCCCTTT‑‑AAAATTaaaaaaaa‑aaaaaaaaact                                                                                                <  1:1374934/123‑3 (MQ=255)

                           ttaattaaAAAAAAATAAAATAAATAAATTTTATAAATTATATACACGTGTTT‑TATTTTTTTTTTTTTTT‑AAAT‑TAACAAAA‑AAAAAAA‑AAAAAAATCCC‑CTTAAAAATTaaaaaaaa‑aaaaaaaaaa                                                                                                 <  2:1645825/128‑1 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAACACCTT‑‑‑AAAAATaaaaaaaa‑aaaaaaaaaaaaa                                                                                              >  1:610438/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAAAAATCAC‑‑ATTAAAAATTaaaaaaaa‑aaaaaaaaaaaa                                                                                               >  2:1561882/1‑128 (MQ=255)

                            taattaaAATACCAAAAACTTAATAATTATTATAATGTAGATCCTCTTGATC‑TATTTTATTATATTATT‑ATCT‑TAAAAAAT‑AAAAAAA‑AAAAAATAAAC‑‑TTAAAAAATaaaaaaaa‑aaaaaaaaaaaa                                                                                               >  2:438691/1‑128 (MQ=255)

                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTTATA‑TATTTTTTAATATTTTT‑ATCT‑TAACAAAT‑AAAAAAA‑AAACAAACACAATaaaaaaaaaaaaaaaaa‑aaaaaaaaaaa                                                                                                >  2:117230/1‑128 (MQ=255)

                             aattaaAATACCATAAACTTAATAATTATTATAAAGTAGATCCTCGTGATC‑TATTTTTTTATATTTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATACAC‑‑TAAAAAATTaaaaaaaa‑aaaaaaaaaaaaa                                                                                              >  1:929606/1‑128 (MQ=255)

                             aattaaAATACCATAAACTTAAAAATTCTTAAAATGTAGATCCTCGTTATC‑TATTTAATTATATGAAT‑AACT‑TCACAAAA‑AAAAAAA‑AAACAAAACC‑‑AAAAAAAATTaaaaaaaa‑aaaaaaaaaacaa                                                                                              >  1:1403072/1‑128 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTTTTT‑ATCT‑TAACAAAT‑AAAAAAA‑AAACAATACC‑‑ATAAAAAAATaaaaaaaa‑aaaaaaaaaaaaaa                                                                                             >  1:559386/1‑127 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAT‑‑AAAATTAAAAATTaaaaaaaa‑aaaaaaaaaaaaaa                                                                                             >  2:5102/1‑127 (MQ=255)

                                taaAATACCATAAAAATAATAATTATTATAATTTATATACTCGTTATC‑TATTTTTTTATTTTTTT‑ATAT‑TCAAAAAT‑AAAAAAA‑AAACAAAACCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaaaaactaaaa                                                                                           <  2:1837542/128‑7 (MQ=255)

                                 aaaaaaACATAAAAATTATAATTATTATAATTTATATACTTTTGTTA‑TATTTTTTTATTTTTTT‑ATCT‑TAACAAAT‑AAAAAAA‑AAAAAATCCCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAACTaa                                                                                          <  2:1797177/128‑1 (MQ=255)

                                 aaaaTACAAAAAACTTATAATTTATTATTAAGAATATCCTCTTGATA‑TATTTTTTTATTTGTTT‑ATAA‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTaaaaaaaa‑aaaaaaaaactaaaaac                                                                                          <  2:631363/128‑9 (MQ=255)

                                  aattACCATAAAATATATAATTATTATAATGTATATCATCTTTATT‑TATTTTTTTATTTTTTA‑TTTT‑TAAAAAATAAAAAAAA‑AAACAATCCCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAACTaa                                                                                          <  2:1624467/125‑1 (MQ=255)

                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAAAAAT‑‑CCAAATAAAAATTaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                         >  2:219543/1‑123 (MQ=255)

                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAAAAAACCAC‑‑TTAAAAATTaaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                         >  1:1522230/1‑123 (MQ=255)

                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTAaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                        >  1:1865492/1‑128 (MQ=255)

                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAAACCCC‑‑TTAAAAATTAaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                        >  1:1052230/1‑128 (MQ=255)

                                       aaaTAAACTTAATAATTATTAAAATTTATAAAATTGTTATA‑TATTTTTTTATTTTTTT‑AAAA‑TAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAaaacaaac                                                                                  <  2:1347007/126‑1 (MQ=255)

                                          taaaaataataataaTTATAAATTATATAGTAGTTATA‑TATTTTTTTAATTTTTT‑ATAT‑TAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AAAAAT‑TTAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                               <  2:1953282/122‑1 (MQ=255)

                                          tAAAATTAATAATTCTTATAATTTTTATAAAAGTTATA‑TTTTTTTTTTTTTTTTT‑AAAT‑TAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AAAAAT‑TTAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                               <  2:232710/128‑1 (MQ=255)

                                           aaaatataaaatTATTATAATTTATATCCACGTGTTA‑TATTTTTTTTTTTTTTT‑ATAT‑T‑AAAAAA‑AAAAAAA‑AAAAAAACCCCAT‑‑‑AAAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  1:1739898/119‑1 (MQ=255)

                                             aattAATAAATCTTATAATTTATAACCTAGTTATT‑TATTTTTTTATTTTTTT‑ATTT‑TAAAAAAA‑AAAAAAA‑AAAAAATACCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                              <  2:1597478/126‑1 (MQ=255)

                                             aCTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAA‑AAAaaacaaacacaat                                                                             >  1:1768285/1‑123 (MQ=255)

                                                taataaTTTATATAATTTATATTCTTGTTTTT‑TATTTTTTTATTTGTTT‑ATTT‑TAATAAAA‑TAAAAAA‑AAAAAATCCCCTTT‑‑‑AAAAT‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                        <  1:179432/128‑1 (MQ=255)

                                                 aataaattataaaaTTTATATCCACGTTTTA‑TATTTTTTTATTTTTTT‑AACT‑ACAAAAAA‑AAAAAAA‑AAACAAACCCC‑‑TTAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                        <  2:1666529/116‑1 (MQ=255)

                                                 aaaaatTATTATAATTTATATAATCTTTATA‑AATTTTTTTATTTTTTA‑ATAA‑TAAAAAAA‑AAAAAAA‑AAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                        <  2:118215/125‑1 (MQ=255)

                                                         ttATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑‑AAAAAA‑AAACAATCCCC‑‑TTAAAAATTAAAAATAA‑AAAAAAAAAAAAA‑‑AAAAACAAAAACTATTTCTAAAAATTacc                                                               >  1:1839321/1‑128 (MQ=255)

                                                             aaTTTATATACTCGTTATA‑TATTTTTTTATTTTTTT‑ATAT‑TAAAAAAT‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                           <  2:686040/128‑1 (MQ=255)

                                                               tttataTCCTCGTTATA‑TATTTTTTTATTTTTTT‑ATCT‑TAAAAAAT‑AAAAAAA‑AAA‑AATACCCTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                        <  2:1670407/123‑1 (MQ=255)

                                                                  atatacTCGTTATA‑TATTTTTTTATTTTTTT‑ATAT‑TTAAAAAA‑AAAAAAA‑AAAAAAACCCC‑‑ATAAAAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                         <  2:523266/123‑1 (MQ=255)

                                                                     aaaatttttttatatttttttattttttT‑ATAT‑TAAAAAAA‑AAAAAAA‑AAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                     <  2:707827/116‑1 (MQ=255)

                                                                         tttGATT‑TATTTTTTTTTTTTTTT‑TTTT‑TCACAAAT‑AAAAAAA‑AAAAAAACCACTT‑‑‑AAAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:117230/126‑1 (MQ=255)

                                                                         cGTTATA‑TATTTTTTT‑TTTTTTT‑ATTTATAACAAAA‑AAAAAAA‑AAAAAATACCC‑‑ATAAAAAAT‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                 <  2:439344/128‑1 (MQ=255)

                                                                         cGTGTTC‑TTTTTTTTTAATTTTTT‑ATCT‑TAAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AAAAAT‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  1:123354/128‑1 (MQ=255)

                                                                           ttatttatttttttttttttttt‑tTAT‑TAAAAAAT‑AAAAAAA‑AAA‑AATACCCATT‑‑AAAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                <  2:956414/120‑1 (MQ=255)

                                                                            ttttatATTTTTTTTTTTTTTT‑ATAT‑TTAAAAAT‑AAAAAAA‑AAAAAAAACACTT‑‑‑AAAAAT‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  2:1503473/123‑1 (MQ=255)

                                                                            tttatatattttttATTTTTTTAATAT‑TAAAAAAA‑AAAAAAA‑AAAAAATAACC‑‑‑TAAAAAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                               <  2:1220735/120‑1 (MQ=255)

                                                                            taattattttttttATTT‑TTT‑AAAT‑AAAAAAAA‑AAAAAAA‑AAAAAAACCC‑‑‑ATAAAAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  2:1884591/121‑1 (MQ=255)

                                                                            attaatatttttttattttttT‑TTAT‑TAAAAAAA‑AAAAAAA‑AAAAAAACCAC‑‑ATAAAAAAT‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  2:919537/123‑1 (MQ=255)

                                                                              atatATTTTTTTTTTTTTTT‑TTAT‑TTAAAAAT‑AAAAAAA‑AAAAAATACCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                              <  1:199456/125‑1 (MQ=255)

                                                                               c‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAATAA‑‑AAAAAAAAA‑‑ATATTTATTAAAATTACATATTAAAACACATTTTATTTTTa                                        >  2:1526049/1‑128 (MQ=255)

                                                                                tttttttttttttttttT‑AACT‑TAAAAAAA‑AAAAAAA‑AAAAAATACCC‑TTAAAAATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                             <  2:1328869/125‑1 (MQ=255)

                                                                                 tATTTTTTTTTTTTTTT‑ATTT‑TAAAAAAT‑AAAAAAA‑AAAAAAAACCCTT‑‑‑AAAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                          <  2:260855/128‑1 (MQ=255)

                                                                                  ttttttttattttttt‑aTTT‑TCA‑AAAA‑AAAAAAA‑AAAAAATACCC‑‑ATAAAAAAT‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                        <  1:1505827/127‑1 (MQ=255)

                                                                                   tttttttATTTTTTA‑ATAT‑AAAAAAAA‑AAAAAAA‑AAAAAAAACC‑‑TTT‑AAAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                        <  2:1656391/128‑1 (MQ=255)

                                                                                    ttttttATT‑‑TTT‑ATTA‑TTACAAAA‑AAAAATA‑AAAAAAAACCC‑TTTAAAATATAAAAAAAATAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTa                                        <  2:1299179/128‑1 (MQ=255)

                                                                                      tttttttttttt‑ATAT‑TAACAAAT‑AAAAAAA‑AAAAAATTCACTT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  1:1610217/128‑1 (MQ=255)

                                                                                      ttttATTTTTTT‑ATCT‑TAAAAAAA‑AAAAAAA‑AAACAATCCACTT‑‑‑AAAAAT‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:1782623/128‑1 (MQ=255)

                                                                                      ttttATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAA‑‑AAAAACAAAATATATTAAATAAAATTCAATATAAAAAAAAATTTTATTTTTAAAAt                                    >  2:1280637/1‑128 (MQ=255)

                                                                                       ttttttttttt‑tTCT‑TAAAAAAT‑TAAAAAA‑AAACAATTCACTTT‑‑‑AAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:1378/128‑1 (MQ=255)

                                                                                       tttATTTTTTT‑AAAT‑AAAAAAAT‑AAAAAAA‑AAACAATACCCTT‑‑‑AAAAAT‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                   <  2:1371173/128‑1 (MQ=255)

                                                                                       tttATTTTGTT‑TTAT‑TCAAAAAT‑AAAAAAA‑AAAAAAT‑‑ACATTT‑AAAATTTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                    <  1:1705168/128‑1 (MQ=255)

                                                                                       tttATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AACCAATCCCC‑‑‑TAAAAAATTAAAAAAA‑AAAAAAAAAAAA‑‑TAAAAAAAAAAACAATTTCATAAAAATCACAATAAAACCCCAATTAATTTTTAAAATaa                                  >  2:415279/1‑128 (MQ=255)

                                                                                       tttATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTT‑‑‑AAAAATTAAAAAAA‑AAAAAAAAAAAA‑‑TAAAAAAAAAATATTTTTATTAAAAATAAATATTATAAAAAATTTTATTTTTAaaaaaa                                  >  2:111847/1‑128 (MQ=255)

                                                                                        ttATTTTTTT‑AACT‑TAAAAAAT‑AAAAAAA‑AAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                  <  1:1484980/128‑1 (MQ=255)

                                                                                         tATTTTTTT‑AAAT‑TAAAAAAA‑AAAAAAA‑AAAAAAAACCCTT‑‑‑AAAAAT‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                 <  2:1834357/128‑1 (MQ=255)

                                                                                          tttttttT‑ATTT‑TAAAAAAT‑AAAAAAA‑AAAAAATTCAATT‑‑‑AAAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATACCACATTTTATTTTTAAAATAAg                                 <  1:1667920/127‑1 (MQ=255)

                                                                                            ttttttattCT‑TCA‑AAAT‑AAAAAAA‑AAATAAATACC‑CTTAAAAAAT‑‑‑AAAAA‑AAAAAAAAAAAAACTATAAACAAACTCTATTTCATAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                              <  2:1037822/120‑1 (MQ=255)

                                                                                                ttttttaaaaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑‑TT‑AAAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                            <  1:1022345/116‑1 (MQ=255)

                                                                                                  ttaattaaaaaaaa‑aaaaaaa‑aaaaaATCCC‑‑TTT‑AAAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                           <  2:1436132/118‑1 (MQ=255)

                                                                                                    tCT‑TCAAAAAT‑AAAAAAA‑AAAAAAAACCCTTT‑‑‑AAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                        <  2:213901/128‑1 (MQ=255)

                                                                                                    atattaaaaaaa‑aaaaaaa‑aaaaaaaACCC‑‑TTAAAAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                          <  1:234450/120‑1 (MQ=255)

                                                                                                     ttataaaaaaT‑AAAAAAA‑AAAAAAAACCC‑‑ATAAAAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                         <  2:1763014/121‑1 (MQ=255)

                                                                                                      aataaaaaaa‑aaaaaaa‑aaaaaATCCCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                        <  2:170357/122‑1 (MQ=255)

                                                                                                          aaaaaa‑aaaaaaa‑aaaaaATCCCATT‑‑‑AAAAATT‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATACCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                 <  2:105607/126‑1 (MQ=255)

                                                                                                           aaaaT‑AAAAAAA‑AAACAATCCCCAT‑‑‑AAAAAT‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                <  2:1806078/127‑1 (MQ=255)

                                                                                                               aaaaaaaaa‑aaaCAATACCCTT‑‑‑AAAAATTAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata               <  2:1932995/126‑1 (MQ=255)

                                                                                                                       a‑aaaCAATCCCC‑‑TTAAAAATTAAAAAAAA‑AAAAAAAAAAAAAATAAAAACAAAATAAATTTATTAAAATTCCAAATTTAAACACATTTTTTTTTTAAAATAATATATTTACATAatatatataatata        >  2:1894514/1‑122 (MQ=255)

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAA‑AAACAATCCCCTTTTAAAAAATAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATA  >  CP016816/202358‑202608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`