Predicted mutation
evidence seq id position mutation annotation gene description
RA CP016816 484,793 A→T intergenic (‑102/+69) JCVSYN2_02220 ← / ← JCVSYN2_02225 hypothetical protein/50S ribosomal protein L7/L12

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816484,7930AT97.3% 2341.1 / 15.4 805intergenic (‑102/+69)JCVSYN2_02220/JCVSYN2_02225hypothetical protein/50S ribosomal protein L7/L12
Reads supporting (aligned to +/- strand):  ref base A (13/9);  new base T (399/383);  total (413/392)
Fisher's exact test for biased strand distribution p-value = 5.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 825 total aligned reads displayed.

ATTATTTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCT  >  CP016816/484665‑484913
                                                                                                                                |                                                                                                                         
        aaaaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaa                                                                                                                   >  2:1920173/1‑128 (MQ=255)
        aaaaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaa                                                                                                                   >  1:459155/1‑128 (MQ=255)
          aaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAat‑ataaaaagc                                                                                                                 <  2:875980/128‑3 (MQ=255)
          aaaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTAGTTAATTATATTTTTTTTTTaa‑tataaaaag                                                                                                                 >  1:117794/1‑127 (MQ=255)
           aaTAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATATCAGAAGCTCTTAACAACTAAACTACACTCGATTATATAATTATAATTTTTTTTAAA‑ATAAAAAGCa                                                                                                                >  2:1459562/1‑128 (MQ=255)
             tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAAt                                                                                                              <  1:1816020/128‑1 (MQ=255)
             tAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGAATATATAATTAAATTTAATTTTAAT‑ATAAAAAGCAAt                                                                                                              >  2:1821309/1‑128 (MQ=255)
               gTCAAAACTCATAGATATAATCATTTTATAGTTGACCAAAAAATAAGATATAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTa                                                                                                            <  1:1785539/128‑1 (MQ=255)
               ctCAAAACTAATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTa                                                                                                            <  1:1355571/127‑1 (MQ=255)
                 cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                          >  2:1122133/1‑128 (MQ=255)
                 cAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTaaa                                                                                                          <  2:1298867/128‑1 (MQ=255)
                  aaaaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAac                                                                                                         <  1:308459/128‑1 (MQ=255)
                   aaaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAaca                                                                                                        >  1:1618448/1‑128 (MQ=255)
                    aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                       >  1:1250658/1‑128 (MQ=255)
                    aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                       >  2:299938/1‑128 (MQ=255)
                    aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                       >  2:1867714/1‑128 (MQ=255)
                    aaCTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAacac                                                                                                       >  1:234208/1‑128 (MQ=255)
                      cTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAcaacac                                                                                                     >  1:196659/1‑128 (MQ=255)
                         aTAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACT‑AACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACaaaa                                                                                                 <  1:1454206/128‑1 (MQ=255)
                                tAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                           <  2:1787084/128‑1 (MQ=255)
                                tAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                           >  1:1748662/1‑128 (MQ=255)
                                    cattatataTTTGAACATAAAATTAGATAGAGCATAGAAGAATCTCTTAACAACTAAACTAAACTATATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccata                                                                                       <  1:1330213/123‑4 (MQ=255)
                                      ttttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccataat                                                                                     <  1:1580855/128‑6 (MQ=255)
                                        ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGTAATTAAACACACAAAAACTCACCCATTATg                                                                                   >  2:594293/1‑128 (MQ=255)
                                        ttATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATg                                                                                   >  2:659740/1‑128 (MQ=255)
                                          ataGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGt                                                                                 <  1:806653/128‑1 (MQ=255)
                                           taGTTGATATAAAAATAAGATAGATCATAGCATAAGTTGTTAACAACTATAATAAACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTg                                                                                <  1:886971/128‑1 (MQ=255)
                                           taGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTg                                                                                >  1:432478/1‑128 (MQ=255)
                                            aGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGa                                                                               >  1:1690467/1‑128 (MQ=255)
                                             gTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACACGATTATTTAATTATATTTATTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACACATTATGGTGAg                                                                              >  2:834132/1‑128 (MQ=255)
                                                gACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGGGAGttt                                                                           >  1:1723181/1‑128 (MQ=255)
                                                    aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaa                                                                       <  2:241925/128‑1 (MQ=255)
                                                    aaaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAC‑ATAAAAAGCAATTAAACACACAAAAACTCACACATTATGGTGAGTTTaaaa                                                                       >  2:1334948/1‑128 (MQ=255)
                                                     aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                      <  1:1554927/128‑1 (MQ=255)
                                                     aaaaaTAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                      <  2:114614/128‑1 (MQ=255)
                                                          tAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTaaaaa                                                                      <  1:521864/123‑1 (MQ=255)
                                                          tAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAattatt                                                                 >  2:43822/1‑128 (MQ=255)
                                                           aaGATAGAGCATAGCAGAATCTCTTAACAACTAAACTACACTCTATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTc                                                                <  2:95229/128‑1 (MQ=255)
                                                           aaGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTAATGTGAGTTTAAAAATTATTc                                                                >  2:275227/1‑128 (MQ=255)
                                                            aGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTc                                                                >  2:207753/1‑127 (MQ=255)
                                                            aGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAATATAAAAAGAAATAAAAAACACAAAAACTCACAAATAATGTTGAGTTTAAAAattatta                                                                >  2:522658/1‑127 (MQ=255)
                                                              aTAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaa                                                             <  2:1186780/128‑1 (MQ=255)
                                                               tAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaaa                                                            >  1:115346/1‑128 (MQ=255)
                                                                tgagCATATCAGAAGCTCTTAACAACTAAACTAAAGTCGATTTTTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCaaaaa                                                           <  1:1112595/127‑1 (MQ=255)
                                                                 gagCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACACATTATGGTGAGTTTAAAAATTATTCatatat                                                          >  2:1543614/1‑123 (MQ=255)
                                                                  agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAccata                                                                                       <  1:981288/98‑4 (MQ=255)
                                                                  agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCa                                                               >  2:567399/1‑122 (MQ=255)
                                                                  agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAtt                                                         >  1:631989/1‑128 (MQ=255)
                                                                  agCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTATAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGATAGTTTAAAAATTATAAAAAAAtt                                                         >  2:488109/1‑128 (MQ=255)
                                                                  agCATAGCAGAAGATCTTAACAACTAAACTAAAATCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGAAATTAAAAACACAAAAAATAAACAATTATGGTTACTTTAAAAATTATTAAAAAAtt                                                         >  1:1530411/1‑128 (MQ=255)
                                                                   gCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGACTTTAAAAATTATTCAAAAAttt                                                        >  1:770986/1‑128 (MQ=255)
                                                                      tAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                     <  2:1086361/128‑1 (MQ=255)
                                                                      tAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                     <  1:679145/128‑1 (MQ=255)
                                                                       aGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAATTGatt                                                    <  2:801023/128‑1 (MQ=255)
                                                                        gCAGAAGATCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGatta                                                   <  1:1292179/128‑1 (MQ=255)
                                                                         cAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGattat                                                  >  1:858668/1‑128 (MQ=255)
                                                                          aGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAACAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGatttat                                                 >  1:1500100/1‑125 (MQ=255)
                                                                            aaGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAATATGGTGAGTTTAAAAATTATTCAAAAATTTGATTAtttt                                               >  1:393676/1‑128 (MQ=255)
                                                                               ctctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGATTTTAAAAATAATTCAAAAATTTGATTATTTTaaa                                            >  1:1398988/1‑128 (MQ=255)
                                                                               atctTAAAAACTAAACTACACTAGATTAATTAATTATATTATTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTaaa                                            <  2:347030/127‑1 (MQ=255)
                                                                                tctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAAt                                           >  1:260896/1‑128 (MQ=255)
                                                                                 ctTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATc                                          <  2:1505848/128‑1 (MQ=255)
                                                                                  ttAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAAt                                                          >  1:1871369/1‑111 (MQ=255)
                                                                                    aacaacTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAAt                                       <  1:1201712/128‑1 (MQ=255)
                                                                                    aacaacTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATAATTCAAAAATTTGATTATTTTAAATCAAt                                       >  2:1267805/1‑128 (MQ=255)
                                                                                     acaacTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCAc                                                                                           >  1:339331/1‑75 (MQ=255)
                                                                                      caacTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGTTGAGTTTAAAAATTATTCAAAAATTTGAGTATTTTAAATCAAttt                                     >  1:1010390/1‑127 (MQ=255)
                                                                                      caacTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTg                                     >  1:563883/1‑128 (MQ=255)
                                                                                      caacTAAACTACACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATAATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTg                                     >  1:826704/1‑128 (MQ=255)
                                                                                       aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                    >  1:1076975/1‑128 (MQ=255)
                                                                                       aactaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGa                                    <  2:1013638/128‑1 (MQ=255)
                                                                                        actaaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCTATTGac                                   >  2:162050/1‑127 (MQ=255)
                                                                                           aaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCt                                <  2:920375/128‑1 (MQ=255)
                                                                                           aaactaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCt                                <  2:698933/128‑1 (MQ=255)
                                                                                              ctaCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCa                             <  2:464335/128‑1 (MQ=255)
                                                                                               taaacTCGATTATTTAATTATATTTTTTTTTAAT‑AAAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAg                            <  1:945049/125‑1 (MQ=255)
                                                                                               taCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAg                            >  2:1058672/1‑128 (MQ=255)
                                                                                               taCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAg                            >  2:743306/1‑128 (MQ=255)
                                                                                               taCACTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGATCCAg                            >  2:400210/1‑128 (MQ=255)
                                                                                                acacTCTATTAATTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGc                           <  2:1698830/128‑1 (MQ=255)
                                                                                                 cacTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGat                                                     <  2:333947/101‑1 (MQ=255)
                                                                                                  acTCGATTATTTAATTATATTTTTTTTTTAATATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCt                          >  1:1896836/1‑128 (MQ=255)
                                                                                                  acTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCAtt                                                                                      >  2:1656252/1‑67 (MQ=255)
                                                                                                  acTAGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCtt                         <  1:711509/128‑1 (MQ=255)
                                                                                                   cTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCACAAATTTTATTATTTTAAATCAATTGATGATCCAGCTTc                        >  1:1134502/1‑128 (MQ=255)
                                                                                                   cTCGATTATTTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTc                        >  1:1646145/1‑128 (MQ=255)
                                                                                                       attattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTTAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACt                    >  1:592025/1‑128 (MQ=255)
                                                                                                       attattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACt                    <  2:1395922/128‑1 (MQ=255)
                                                                                                       attattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTATATTATATTAAATCAATTCAAGCTACATCTTCAAca                    >  1:737253/1‑127 (MQ=255)
                                                                                                        ttattTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTTAAGCTCCAGCTTCAACTa                   >  2:1740854/1‑128 (MQ=255)
                                                                                                          attTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAt                 >  2:122918/1‑128 (MQ=255)
                                                                                                          attTAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAt                 <  1:492382/128‑1 (MQ=255)
                                                                                                            ttAATTTTATTTTTTTTTAAT‑ATAAAAAGCAAATAAACACACAAAATCTCACCCATTATGGTGAGTTTAAAATTTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt               <  2:1372082/128‑1 (MQ=255)
                                                                                                            ttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAAttt               <  1:1039797/128‑1 (MQ=255)
                                                                                                            ttAATTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTCATTATTTTAAATCAATTGAACCTCAAGCTTCAACTAAtta               >  2:1887695/1‑127 (MQ=255)
                                                                                                              aaTTATATTTTTTTATAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTGGAGCTTCAATTGATTTaa             <  2:196659/128‑2 (MQ=255)
                                                                                                               aTTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGc            <  1:1843302/128‑1 (MQ=255)
                                                                                                               aTTATATTTTTTTTTAAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGc            <  2:897935/128‑1 (MQ=255)
                                                                                                                     tttttttttaAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAt      <  2:1589011/128‑1 (MQ=255)
                                                                                                                       tttttttaAT‑ATAAAAAGCAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCAttt    <  2:631989/128‑1 (MQ=255)
                                                                                                                                |                                                                                                                         
ATTATTTAAAAAATAGTCAAAACTCATAGATTTAATCCTTTTATAGTTGACCAAAAAATAAGATAGAGCATAGCAGAAGCTCTTAACAACTAAACTACACTCGATTATTTAATTATATTTTTTTTTTAA‑AAAAAAAACAATTAAACACACAAAAACTCACCCATTATGGTGAGTTTAAAAATTATTCAAAAATTTGATTATTTTAAATCAATTGAAGCTCCAGCTTCAACTAATTTAGCTTTCATTTCT  >  CP016816/484665‑484913

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑