Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA41.2% 2072.0 / inf 2350intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (431/901);  new base A (792/143);  total (1246/1104)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2415 total aligned reads displayed.

AGAAAACTACTAGCACTTTTTT‑AAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420126‑420380
                                                                                                                                   |                                                                                                                                 
aGAAAACTACTAGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑Ac                                                                                                                                   >  2:5606844/1‑128 (MQ=255)
  aaaaCTACTAGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑aaaa                                                                                                                                 >  1:940123/1‑128 (MQ=255)
   aaaCTACTAGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑Aaaaa                                                                                                                                >  2:6772962/1‑128 (MQ=255)
     actactAGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTa‑aaaaaaa                                                                                                                              >  1:4685484/1‑128 (MQ=255)
       tactaGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAata                                                                                                                            >  2:6226172/1‑128 (MQ=255)
        actaGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTA‑ACAAAAatat                                                                                                                           >  2:5247873/1‑128 (MQ=255)
         ctaGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAAaata                                                                                                                          >  1:1921417/1‑128 (MQ=255)
          tttcacaTTTTT‑ATAAAATTTTTAATTTTTATAACTTTATTATTTTTTAAATTGTTAATTATTTTTCAAATAATTATTTATTTATTAATTTTATGTA‑AT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                                                                                                                         <  2:4921609/125‑1 (MQ=255)
          tttaaatttttt‑AAAAAATTTTTAATTTTTATAAATTTATTTTTTTTTAAATTTTTAAATTTTTTTTAAATAATTATATATTAAAAAATTTTTTTGT‑AT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                                                                                                                         <  1:3787766/122‑1 (MQ=255)
          tataaatttttt‑AAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTATTCT‑CT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATaa                                                                                                                         <  1:4980967/122‑1 (MQ=255)
           aGCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CGTTTTTTTTTTTTTTTTTT‑AAAAAAATATaa                                                                                                                         >  1:143953/1‑128 (MQ=255)
            gCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑TTaaaaaaaaaaaa                                                                                                                       >  2:3555267/1‑121 (MQ=255)
            gCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAatt                                                                                                                       >  1:4487441/1‑128 (MQ=255)
            gCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAatt                                                                                                                       >  2:845917/1‑128 (MQ=255)
            gCACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAAAAAAatt                                                                                                                       >  1:5563230/1‑128 (MQ=255)
             cACTTTTTTAAAAAAATTTTAAATTTAAA‑AAATTTATTATTTTTTAAATTGTTAAAATATTTTAAAATTATTATCTATTAATAAAATTTATTCT‑‑G‑GTTTTTTTTTTTTTTTT‑ACAAAAATATAattta                                                                                                                     <  1:5125584/128‑1 (MQ=255)
             cACTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAattt                                                                                                                      >  1:1000714/1‑128 (MQ=255)
              aCTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CT‑TTTTTTTTTTTTTTTTT‑TAAAAAAAATAattta                                                                                                                     >  1:84452/1‑128 (MQ=255)
              aCTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CGTTTTTTTTTTTTTTTTTT‑AAAAAAATATAattt                                                                                                                      >  2:3691322/1‑128 (MQ=255)
               cTTTTTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑ATTTTTTTTTTTTTTTT‑AAAAAAATAAAatttat                                                                                                                    >  1:2037302/1‑128 (MQ=255)
                ttttat‑AAAAAATATTTAATTTTAATAACTGAATTATTTTTCAAATAGTTAAAATATATTCAAATCATTATCTATTAATCAATATTATGCT‑CG‑TTTTTTTTTTTTTTATT‑AAAAAAAAAAAattaaat                                                                                                                   >  1:5905227/1‑124 (MQ=255)
                   ttt‑ATAAATTTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTCAAATCATTATATATTAATAAATTTTATTCT‑CG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGAt                                                                                                               <  2:5747433/128‑1 (MQ=255)
                        aaaaaTTTTTAATTTTAATAAATTTATTATTTTTTATATTTTTTAATTTTTTTAAAATAATTTTATTTTAATTAATTTTTTTCT‑CG‑‑‑TTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAc                                                                                                          <  1:2708343/128‑1 (MQ=255)
                         aaaaTTTTTAATTTTAATAAATTAATTTTTTTTAAAATTGTTAATTTATTTTAAAATCATTTTATATTAATAAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTaaa                                                                                                           <  1:5218110/128‑1 (MQ=255)
                         aaaaTTTTTAATTTTAAAAACTGTAATTTTTTTCAAATTTTTAAATTTTTTTAAAATAATAATTTATTAATTAATTTTATGCT‑CG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAc                                                                                                          <  2:3053342/128‑1 (MQ=255)
                           aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAct                                                                                                         >  1:2284114/1‑127 (MQ=255)
                           aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑‑‑‑TTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGtat                                                                                                      >  2:3831869/1‑128 (MQ=255)
                            atttttaattttaatAACTTAATTATTTTTAAAATTTTTAAATTATTTTTAAATAATTATATATTAATAAATTTTATGCT‑TG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGt                                                                                                        <  1:6617934/116‑1 (MQ=255)
                             tttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGta                                                                                                       >  1:765901/12‑128 (MQ=255)
                                ttaattttaatAACTTTATTATTTTTAAAATTGTTAAATTATTTTTAAATAATTATCTTTTAATAAATTTTATGCT‑CG‑‑‑‑TTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTa                                                                                                <  2:4698956/120‑1 (MQ=255)
                                    ttttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAAAGTATA‑TTTAt                                                                                               >  1:5380718/5‑128 (MQ=255)
                                     tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACGTATA‑tttttt                                                                                              >  1:406480/4‑125 (MQ=255)
                                      ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTTATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTAT‑AAAAAAAAATAATTTATTTTATTAAACTTATA‑TTTAttt                                                                                             >  1:3418131/3‑126 (MQ=255)
                                      ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CGTTTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATA‑TTTAtt                                                                                              >  1:180566/3‑127 (MQ=255)
                                       taataatTTAATTTTTTTTTAAAATGTTAAATTTTTTTTAAATAATTATATTTTAATAAATTTTATGTT‑CT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGtt                                                                                            <  2:2883533/127‑1 (MQ=255)
                                       taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAATAATAATTTTTTTGATTAAACGTATA‑TTTTTGtt                                                                                            >  2:1646454/2‑128 (MQ=255)
                                       taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAAGTATA‑TTTATtttt                                                                                           >  1:248787/2‑128 (MQ=255)
                                       taatAAATGAATTTTTTTTTAAATTTTTAAATTATTTTAAAATAATTATATATTAATAAATTTTTTGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGtt                                                                                            <  2:6666534/127‑1 (MQ=255)
                                         ataaatttatttttTTTAAAATTTTTTATTTATTTTTAAATAATTATTTATTAATATTTTTTTTTAT‑AT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTta                                                                                          <  1:3667793/120‑1 (MQ=255)
                                             cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTTAACAAAAATAAAATTAATTTTATAAACCTTATA‑TTTATTTTtaata                                                                                       >  1:4241384/1‑128 (MQ=255)
                                              ttaaTTTTTTTTTAAATTTTTAAATTATTTTAAAATAATTATATTTTAATTAATTTTATTATATT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTtaataa                                                                                      <  1:2385077/126‑1 (MQ=255)
                                              tGAATTATTTTTTAAATTGTTAAATTATTTTAAAATCATTATATATTTATAAATTTTATGTT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATaaa                                                                                     <  2:509084/128‑1 (MQ=255)
                                                  ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACGTATA‑TTTATTTTTAATAAAAAtt                                                                                 >  1:6383491/1‑127 (MQ=255)
                                                    attTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAATTTATTTTATTAAAAATATA‑TTTATTTTTAATAAAAAttta                                                                               >  1:4548885/1‑125 (MQ=255)
                                                      ttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATA‑TTTATTTTTAATAAAAAttaaaa                                                                             >  1:120896/1‑123 (MQ=255)
                                                        ttaaattttttATATTTTTTTAAAATTATTATTTATTATTATATTTTATTCT‑TT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAaaag                                                                           <  1:6750701/119‑1 (MQ=255)
                                                              ttGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CGTTTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAACTTATA‑TTTATTTTTAAAAAAAATTGAAAATAAAGt                                                                      >  1:5292615/1‑128 (MQ=255)
                                                               tGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATA‑TTTATGTTTAATAAAAATGAAaaagaaattta                                                                    >  1:1585572/1‑124 (MQ=255)
                                                                gTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CGTTTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAAGTATA‑TTTATTTTTAATAAAAATGTAAAAGAAAGtta                                                                    >  1:2160049/1‑126 (MQ=255)
                                                                  tAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTA‑AAAAAAATATAATTTATTTTATTAAAATTATA‑TTTATTTTTAAAAAAAATTTAAAAAAAATTT‑AAtt                                                                >  1:3528104/1‑128 (MQ=255)
                                                                   aaaTTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAATAATAATTTATTTAATTAAAC‑TATATTTTATTTTAAATAAAAATTAAaaataaatttatttt                                                                >  1:4392542/1‑120 (MQ=255)
                                                                    aaTTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATAAAATTTATTTAATTAAACGTATA‑TTTATTTTTAATAAAAATGTAAAAGAAAGTT‑AAttct                                                              >  1:547959/1‑126 (MQ=255)
                                                                    aaTTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTTATAAAATAATA‑TTAATTTTTAATAAAATTTTAAAAAAAAGTT‑TATTGt                                                              >  1:3004352/1‑128 (MQ=255)
                                                                     attattTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAAAATAATTTATTTTATTAAAGGTTTT‑TTTATTTTTAATAAAAATTAAAAATAAATTT‑AAtttta                                                             >  1:1354460/1‑125 (MQ=255)
                                                                          tttCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATTGAAAATAAATTG‑ATTTTTaataat                                                        >  1:1107640/1‑128 (MQ=255)
                                                                          tttCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATAAATTATTTGATTAAAATTATA‑TTTATTTTTAATAAAAATTTAAAAGAAATTT‑AAttttatttata                                                       >  1:4819154/1‑119 (MQ=255)
                                                                           tttaaaTTATTTTTTAATAATAAATTTTTTTTT‑TT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCataata                                                       <  2:6526518/125‑1 (MQ=255)
                                                                              aaaTCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATTTAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAATTGGAAAAGAAAGTG‑AATTGTCATAAtaatt                                                    >  1:2824310/1‑128 (MQ=255)
                                                                                  cATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATATTTTTTTTTATTAAACTTATT‑TTTTTTTTTAAAAAAAATTAAAAAAAAAGTA‑AATTTTAATAAtaatttaat                                                >  2:5192826/1‑128 (MQ=255)
                                                                                  cATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAAATTATA‑TTTATTTTTAATAAAAATGTAAAAGAAATTA‑AATTTTCATAAtaatttaat                                                >  2:5809457/1‑128 (MQ=255)
                                                                                    ttATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTTATTAAAAGTATA‑TTTATGTTTAATAAAAATGTAAAAGAAATTT‑AATTTTAATATTATTttaatta                                              >  1:5991352/1‑128 (MQ=255)
                                                                                      aTCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATATTTTTTTTTATAAAACTTATA‑TTTATGTTTAATAAAATTGAAAAAAAAATTT‑AATTTTAATAAATATTTATATaaa                                            >  1:690688/1‑128 (MQ=255)
                                                                                         tATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATTGAAAAGAAAGTT‑AATTTTAATAATAATTTAATTAAatat                                         >  1:6186715/1‑128 (MQ=255)
                                                                                          aTTAATCAATTTTATGCT‑CG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATTTTTAATAAAAATGGAAAATAAAGTT‑AATTGTCATAATAATTTAATTAAatatat                                       >  1:5658964/1‑128 (MQ=255)
                                                                                           ttaattaaTTTTTTTTT‑TT‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAatatat                                       <  2:2284114/128‑1 (MQ=255)
                                                                                           ttAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTA‑ACAAAAATATAATTTATTTTATTAAACTTATA‑TTTATTTTTAATAAAAATGAAAAATAAATTT‑AATTGTAAAAATAATTTAATAAAatatat                                       >  1:5819795/1‑128 (MQ=255)
                                                                                             aaTCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATAAAAATTATTTTAAAAAAAGTATA‑TTTATGTTTAAAAAAAATTTAAAAAAAAGAT‑AATTAAAATAAAAAATTAATTAAATATaaaa                                     >  1:6258426/1‑128 (MQ=255)
                                                                                                    tttATGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATTTAATTTTTTTTTTTAAACGTATT‑TTTATTTTTAATAAAAATGGAAAAGAATGTT‑AATTGTAATAATAATTTATTTAAATTTAAAACAATGTa                              >  2:4210111/1‑128 (MQ=255)
                                                                                                     tttattgttgtttttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGt                               <  2:5453846/117‑1 (MQ=255)
                                                                                                      ttttttgtttgtttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTa                              <  2:6429627/117‑1 (MQ=255)
                                                                                                       aTGCT‑CG‑‑TTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGTAAAACAAAGTT‑AATTTACTTAAAATTTTAATTAAATATAAAACAATTTAAGta                          >  2:6144731/1‑127 (MQ=255)
                                                                                                       aTGCT‑CG‑‑TTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACTTATA‑TTTATGTTTAATAAAAATTTAAAATAAAGTT‑AATTGTAATAATAATTTAATTAAATATATAaaaaattaatta                          >  1:1705190/1‑120 (MQ=255)
                                                                                                        tGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTAATTAAAAGTAAA‑TTTATTTTTATTAAAAATGTAATAAAAATTT‑ATTTGAAATAATATATTAATTAAATAAATAaaaaattaattt                          >  2:776085/1‑120 (MQ=255)
                                                                                                        tGCT‑CG‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTTATTAAACGTATA‑TTTTTTTTTAATAAAAATTGAAAATAAATTT‑AATTTTAATAATAATTTAATTAAATATATAAAaatttaattt                          >  1:3136919/1‑128 (MQ=255)
                                                                                                         gCT‑CG‑TTTTTTTTTTTTTTTTA‑AAAAAAATATAATTTTTTTGATTAAACGTATT‑TTTTTTTTTAATAAAAATGGAAAAAAAAGTA‑AATTTAAATAATAATTTAATAAAATATAAAACAATTTAAGttt                         >  1:258479/1‑128 (MQ=255)
                                                                                                            ttgtttttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGtttt                        <  2:2453994/124‑1 (MQ=255)
                                                                                                            ttg‑TTTTTTTTTTTTTTTTT‑AGAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:1336321/126‑1 (MQ=255)
                                                                                                            ttg‑TTTTTTTTTTTTTTTTT‑ACAAATATTTAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:4513142/126‑1 (MQ=255)
                                                                                                             tttttttttttttttttttt‑ATAATATTTTTATTTTTTTGATTTATTTTATA‑TTTTTGTTTATTAAAAATGGAAAATAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  2:259574/125‑1 (MQ=255)
                                                                                                             tttttttttttttttttttt‑ACATAAATATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTa                       <  1:6469252/125‑1 (MQ=255)
                                                                                                             cgtttttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAACTTATA‑TTTTTTTTTAATAAAAATGAAAAATAAATTT‑AATTTTAATAATAATTTAATTAAATATATAAAAATTTAATTTTTa                       >  1:3938420/4‑128 (MQ=255)
                                                                                                              g‑TTTTTTTTTTTTTTTTT‑ACAAAAATTTAATTTATTTGATTTAACGTATT‑TTTATTTTTAATAAAAATGGAAAAGAAAGTT‑AATTTTAATAATAATTAAATTAAATATATACATATGTAATTTTTaaa                     >  2:1489502/1‑128 (MQ=255)
                                                                                                              g‑TTTTTTTTTTTTTTTTT‑AAAAAAATATAATTTATTTGATTAAACGTATA‑TTTATTTTTAATAAAAATGTAAAATAAAGTA‑AATTTTCATAATAATTTATTTAAAAATATAAAAATTTAATTTTTaaa                     >  1:6080288/1‑128 (MQ=255)
                                                                                                                gtttttttttttttttt‑AAAAAAATATAATTTTTTTTTTTAAAAGTATA‑TTAATTTTTAATAAAAATGAAAAAAAATGTT‑ATTTTTAAAAATTATTTAATTTAATATATAAC‑ATATAAATTTTaaaaa                   >  2:4382821/2‑127 (MQ=255)
                                                                                                                 tttttttttttttttt‑ATAAAAATATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑ATTTGTCATTATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                   <  2:5325651/128‑1 (MQ=255)
                                                                                                                 tttttttttttttttt‑AAATAAATATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                   <  2:1755682/128‑1 (MQ=255)
                                                                                                                 gttttttttttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAac                   <  2:5923142/127‑1 (MQ=255)
                                                                                                                   tttttttttttttt‑ACATAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                 <  2:3422930/128‑1 (MQ=255)
                                                                                                                   tttttttttttttt‑AATAAATTATAATTTTTTTGATTAAATGTATA‑TTTATGTTTAATAAATATTGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                 <  2:1136732/128‑1 (MQ=255)
                                                                                                                    ttttttttttttt‑ACAAAAATATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta                <  2:1994366/128‑1 (MQ=255)
                                                                                                                    ttttttttttttt‑ACAAAAATATAATTTATCTGATTAATCGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactta                <  2:6862013/128‑1 (MQ=255)
                                                                                                                    ttttttttttttt‑AAAAAAAAATAATTTTTTTTATTAAAC‑TTTT‑TTTTTTTTTAAAAAAAAATTAAAAAAAATTGAAATTTTAAAAATAATTTAATTAAATATATAAAAATTTAATTTTAAAAaatta                >  2:1908195/1‑128 (MQ=255)
                                                                                                                     tttttttttttt‑ATAAAATTATAATTTATTTGATTAAAAGTATA‑TTTATGTTTAATAAAAATGGAAAAGTAAGTT‑AATTTTAATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttac               <  2:3988451/128‑1 (MQ=255)
                                                                                                                       tttttttttt‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttactt             <  2:601561/128‑1 (MQ=255)
                                                                                                                         tttttttt‑AAAAAAATATAATTTATTTGATTAAACGTATA‑TTTTTGTTTAATAAAAATGGAAAAGAAATTG‑AATTTTAATAATATTTTAATTAAATTTATAACAATTTAATTTTTAAAACTTACtttt           >  1:326091/1‑128 (MQ=255)
                                                                                                                         tttttatt‑ACATAAATATAATTTATTTGATTAAACGTATA‑TTTTTGTTTAATAAAAATGGATAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt           <  2:3233745/128‑1 (MQ=255)
                                                                                                                          ttttttt‑AGAATAATATAATTTATTTGATTAAACTTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTT‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttttt          <  2:555263/128‑1 (MQ=255)
                                                                                                                              ttt‑ACAATATTATATTTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTTTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtt      <  2:2153218/128‑1 (MQ=255)
                                                                                                                               tt‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGttt     <  1:5751963/128‑1 (MQ=255)
                                                                                                                                t‑ACATAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGtttt    <  2:6334194/128‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                 
AGAAAACTACTAGCACTTTTTT‑AAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCT‑CG‑TTTTTTTTTTTTTTTTT‑ACAAAAATATAATTTATTTGATTAAACGTATA‑TTTATGTTTAATAAAAATGGAAAAGAAAGTG‑AATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420126‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑