Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8930T.60.7% inf / inf 2260intergenic (‑142/+43)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (467/285);  new base . (673/489);  total (1149/1111)
Fisher's exact test for biased strand distribution p-value = 7.02e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.81e-02

Only 100 of 2658 total aligned reads displayed.

AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020
                                                                                                                                 |                                                                                                                                
aaTTTTTATATATTAGTTAAATTAAGGATGTATAATAAAAATTAATAATAACTTTACAAACCAAATTCCCCTTTAAATTCAAATAACATTATATAAATATAAATTTTTTAAA‑TAAAAATATTAAAAC‑t                                                                                                                                  <  2:3134120/128‑1 (MQ=255)
  tttATATATATTATTTTTCTTATTGTTGTATAAAAAAAAATAATAATAACTGTAAAAACCAAAATGCCCTTTAAATTTAAATAACATTTTAAAAATATAAATTTTTTAAA‑GAAAAATATTAAAAA‑ttt                                                                                                                                <  2:528537/128‑1 (MQ=255)
  tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑ttt                                                                                                                                >  1:3845909/1‑128 (MQ=255)
    tatatataTTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑ttttt                                                                                                                              >  1:5466493/1‑128 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑tttttttttt                                                                                                                         >  1:218558/1‑128 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑tttttttttt                                                                                                                         >  2:2258741/1‑128 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑attatttttt                                                                                                                         >  1:2558505/1‑128 (MQ=255)
           atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCATTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAA‑GAAAAATATTACAAA‑tttttattattt                                                                                                                       >  2:4572837/1‑128 (MQ=255)
               gtgtaattAATGATGTAATATACAAATTAATAATAACTTTACAACCCAAAATCCCCTTTAAATTCAAATAACATTATTAAAATTTAAATTTTTTAAA‑TAAAAATATTACAAC‑tttttttttttttgga                                                                                                                   <  2:1366314/122‑4 (MQ=255)
                tGAACTTAAGTAATTATAATACAAATTAATAATAAATGTACAAACCAAAATCACCTTTAAATTAAAATAACAATATAAAAATATAAAATTTTTAAA‑TAAAAATATTACAAC‑tttttttttttttttgg                                                                                                                  <  2:776213/128‑3 (MQ=255)
                  aaCTTAAGGATTTATAAAACAAATTAATAATAACTTTACAAACCAAATTCCCCTTTAAATTCAAATAACATTATATAAATATAAATTTTTTAAA‑GAAAAATATTACAAC‑tttttttttttttttggaa                                                                                                                <  1:1811096/128‑5 (MQ=255)
                    atttattttttataATAAAAATTAATAATAAATTTTAAAAACAAATTTCACTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAA‑TAAAAATATTAAAAA‑TTTTTTTTTTTTTTTTGGAAc                                                                                                              <  2:6277137/118‑1 (MQ=255)
                      tAAGTATTTAAAATAAAAATAAAAAAAAAATGTACAAACAAAATACCCATTTAAATTAAAATAAAATTATAAAAATATAAATTTTTTAAA‑AAAAAATATTAAAA‑‑‑ATTTTTTTTTTTTTTGGAACTAAc                                                                                                          <  1:1000203/128‑1 (MQ=255)
                      tAAGGATGTAAAATACAAATTATTAATAAATTTACAATCCAAATTACCCTTTAAATTTAAAAAACATTATATAAATATAAATTTTTTAAA‑CAAAAATATTTCAAC‑‑ATTTTTTTTTTTTTTGGAACTaa                                                                                                           <  1:2103481/128‑1 (MQ=255)
                       aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATAACAAC‑tttatttttttttttataaataaa                                                                                                           >  1:2663157/1‑119 (MQ=255)
                          gATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑ttttttttttttttttttaaaaaaaat                                                                                                        >  1:3553156/1‑117 (MQ=255)
                            tGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTGGAACTAAAataa                                                                                                      >  1:6109945/1‑127 (MQ=255)
                             ttaaaataCAAATTAAAAAAAACATTAAAAACAAAATTCACCTTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAA‑TAAAAATATTACAA‑‑AATTTTTTTTTTTTTTGGAACTAACATATaa                                                                                                    <  1:1374721/124‑1 (MQ=255)
                              tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTT‑GAACTAACATATaaa                                                                                                   >  1:736986/1‑127 (MQ=255)
                              taaaattaaaaTTAAAAAACACTATACACCGCAAATTTCCCTTTAAATTCTAATAAAAATATATAAATATTATTTTTTTAAA‑TAAAAATA‑TAAAAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                                   <  2:2848654/120‑1 (MQ=255)
                               agaataCAAATTAATAAAAACTGTACAACCCAAAATCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑TAAAAATATTACAAC‑‑ATTTTTTTTTTTTTTGGAACTAACATATAAtt                                                                                                  <  1:5101314/126‑1 (MQ=255)
                                   taaaaaTTAATAATAAATTTAAAAAACAAATTACCCTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAA‑GAAAAATATTAAAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTAc                                                                                              <  2:5661129/125‑1 (MQ=255)
                                   taCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGAAAAAAAAATATAATTTTAc                                                                                              >  2:5068230/1‑128 (MQ=255)
                                   taCAAATTAATAATAACTGTACAACACAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTATTTTTTTTTTTT‑TAATTAAAAAATAATTTTAc                                                                                              >  1:5754857/1‑128 (MQ=255)
                                    aCAAATTAATAATAACTGTACAACCCAAATACCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                             <  2:3743511/128‑1 (MQ=255)
                                     cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTT‑TAAATAAAATATAATTTTaaaa                                                                                            >  1:3154682/1‑125 (MQ=255)
                                         ttAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTATTTGTTTGTATCTAAAATATAATTTTACCAatta                                                                                        >  1:6654365/1‑128 (MQ=255)
                                          taaaaaaaaacttACAACAGAAATTCCACTTTTAATTAAAATAATATTATATAAATATAAATTTTTTATA‑TAAAAATATTAAAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattat                                                                                       <  2:6141475/116‑1 (MQ=255)
                                            ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTTTTTTAAATAAAATATAATTTTAAAAattat                                                                                       >  1:117310/1‑128 (MQ=255)
                                             taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTGTAAATAAAATATAATTTTACAAAttatta                                                                                     >  1:3997417/1‑128 (MQ=255)
                                               ataaCTGTACAACCCAAATTCCCCTTTAATTTCAAATAACATTTTATAAAGATAAATTTTTTAAA‑TAAAAATATTACAAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                                   <  2:5171170/128‑1 (MQ=255)
                                                 aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTT‑‑GAACAAAAATATAATTTTACCAATTATTAGaattt                                                                               >  2:873105/1‑128 (MQ=255)
                                                    tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATATTTTAAA‑GAAAAATATTACAAC‑TTTTATTTTTTTTTTT‑TAAATAAAATATAATTTAAAAAattataaaattttaa                                                                             >  2:4434370/1‑118 (MQ=255)
                                                      tACAACCCAAATTCACCTTTAAATTCAAAAAACATTATATAAATCTAAAATTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                                           <  1:3358935/128‑1 (MQ=255)
                                                        cAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTTGAAATAAAATATAATTTTACAAATTTATAGaatttaaatt                                                                          >  1:1304671/1‑128 (MQ=255)
                                                           cccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAAAATTTAATTTTACCAATTATTAGaatttcaatttccc                                                                      >  2:2114597/1‑126 (MQ=255)
                                                           cccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTATaatttcaatttaaaa                                                                     >  2:2406246/1‑124 (MQ=255)
                                                           aaataaTTACCCTTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAA‑GAAAAATATTAAAA‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcaca                                                                     <  1:2877362/124‑1 (MQ=255)
                                                              aaaTTACCCTTTTAATTTAATTAAAATTTTATAAAGTTAAATTTTTAAAA‑GTAAAATTTTAC‑AT‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑Ga                                                                  <  2:3379981/128‑1 (MQ=255)
                                                               aatttaaatttAAATTAAAATAAAATTATATAAATTTAAATTTTTTAAA‑TAAAAATATTAAAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GAt                                                                 <  2:2544992/120‑1 (MQ=255)
                                                               aattacaatttAAATTCAAATAAAATTATATAAATATAAATTTTTTAAA‑TAAAAATATTAAAAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑Ga                                                                  <  1:4578978/120‑1 (MQ=255)
                                                               aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTTTTAGtaattaaatttaaaatat                                                                  >  1:1490288/1‑121 (MQ=255)
                                                                 ttCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTT‑TAAATAAAATATAATTTTAACAATTTTTATAATTTAAATTTCACA‑GCTGa                                                               >  2:6722026/1‑128 (MQ=255)
                                                                    cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACAAATTTTTAAAATTTAAATTTAAAA‑TATAAAtt                                                            >  1:4062917/1‑128 (MQ=255)
                                                                     ccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTTGAAATAAAATATAATTTTACAAATTATTTGAatttcaaattcaaaattaaatt                                                             >  1:3463701/1‑118 (MQ=255)
                                                                      ttttAAAATTTAATAAAATTATATATTTTTATATTTTTTAAA‑TTAAAATAATAAAAA‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTg                                                           <  2:2710992/127‑1 (MQ=255)
                                                                        ttaaattaaaATAAAATTATATAAATATAAATTTTTTAAA‑TAAAAATATTACAAC‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATttc                                                      <  2:198109/128‑1 (MQ=255)
                                                                        ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTATTTTTTTTTT‑AAACTAAAATATAATTTTACCAATTATTATAATTTAAATTTCAAA‑TATTAAtttttt                                                        >  2:3901683/1‑124 (MQ=255)
                                                                         taaatttaaattAAATTATATAAATTTAAATTTTTTAAA‑TAAAAATATTAAAA‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATttc                                                      <  1:4312950/128‑1 (MQ=255)
                                                                         tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACAAATTATTAGAATTTCAATTTCAAA‑TATTAATTAAttt                                                       >  1:6764959/1‑128 (MQ=255)
                                                                         tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTAACAATTATTTGAATTTCAATTTAACA‑TATGAATTGAttt                                                       >  2:5920174/1‑128 (MQ=255)
                                                                         tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATTATTTTACCAATTATTATATTTTAAATTTAAAA‑GATTAATTGATttc                                                      >  2:1209494/1‑128 (MQ=255)
                                                                         tAAATTAAAATAACAATATATAAAGATATATTTTTTAAA‑GAAAAATATTAATAC‑‑TTTTTTTTTTTTTTTGGTACTAACATATAATTTTACCAATTATTAGAATTTCTATTTCACA‑GATGAATTGAttt                                                       <  1:5559999/128‑1 (MQ=255)
                                                                          aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTTTTGGAAAATACATGTAATTTATCACATTATAAAAATTTAAATTTAACACGATAAAttctt                                                         >  2:3506557/1‑125 (MQ=255)
                                                                          aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTAACA‑TATGAATTGATttct                                                     >  1:2299618/1‑128 (MQ=255)
                                                                           aaataaaattaaattATATTTATATTAATGTTTTACA‑GAAAAATATTTCAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATttct                                                     <  1:1592031/123‑1 (MQ=255)
                                                                              ttaaaTAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTtcttct                                                  <  1:6564009/126‑1 (MQ=255)
                                                                               cAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTGGAACTAACAAATAATTTTACCAATTATTAGAATTTAAATTTAACA‑GATGAATTGATTTCTTAtaa                                                >  2:3009139/1‑128 (MQ=255)
                                                                               cAAAAAAAATTATATAAATATAAATTTTTTAAA‑TAAAAATTTTA‑ATA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCta                                                 <  2:1489931/128‑1 (MQ=255)
                                                                                 aaTAAAATTTTATAAATATAATTTTTTTAAA‑TAAAAA‑ATTTAAAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCtaat                                               <  2:1814734/128‑1 (MQ=255)
                                                                                 aaTAAAAATTTATAAATATTAATTTTTTAAA‑TAAAAATATT‑TAAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCtaat                                               <  2:1694582/128‑1 (MQ=255)
                                                                                    aaCATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACAAATTTTTAGAATTTAAATTTAACA‑TATGAATTTAttttttaatattat                                            >  1:473379/1‑120 (MQ=255)
                                                                                    aaCATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTATTTTTTTGGAACTAAAATATAATTTTAACAATTATTAGAATTTAAATATAACA‑TATGAATTGATTTATTAtaataaa                                            >  1:3694186/1‑127 (MQ=255)
                                                                                    aaCATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAA‑‑‑AATTTTTTTTTTTTTGGAACAAACATATAATTTTAACAATTATTATAATTTAAATTTAACA‑AATTAATTTATTTATTCaattaatt                                           >  2:4909807/1‑128 (MQ=255)
                                                                                     aCATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTATAATTTCAATTAAACA‑TATGAAATTATTACTTCTaataat                                            >  1:4435958/1‑128 (MQ=255)
                                                                                     aCATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTAAATTTAAAA‑GATTAAATTAATTATTATAAAAAtt                                           >  1:1672748/1‑128 (MQ=255)
                                                                                          atttaAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCt                                      <  1:5998051/125‑1 (MQ=255)
                                                                                          atataAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAAAAACAAAAAATTTTACCAATTATTATAATTTCAATTAAACA‑TATAAATTAATTTATTATAATAAattttat                                      >  2:1588496/1‑124 (MQ=255)
                                                                                           tataAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAACATAAAATTTAACCAAATAATACAATTACAAATTCACA‑GATGAATTGATTTATTCTAATAATTTgaaaa                                     >  1:5855590/1‑124 (MQ=255)
                                                                                           attaAATATTAATTTTTTAAATTAAAAATTTTAAACA‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTc                                       <  1:5351119/126‑1 (MQ=255)
                                                                                            ttaAAGATTAAATTTTTAAA‑TATAAAATTTACAAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCta                                     <  1:2773128/127‑1 (MQ=255)
                                                                                            ataatcttAAATTTTTTAAA‑GAAAAATATTAAAA‑‑‑TTTTTTTTTTTTTTTGGAACTAACATAAAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCtata                                   <  2:3615347/121‑1 (MQ=255)
                                                                                            ataaatataaatTTTTTAAA‑TAAAAATTTTAAAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCtat                                    <  2:6412824/128‑1 (MQ=255)
                                                                                            ataAATTTAAATATTTTAAATTTAAAATTTTA‑AAA‑TTTTTTTTTTTTTTTTTGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCta                                     <  1:6365879/128‑1 (MQ=255)
                                                                                             taAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAAATATTAGATTTTCAATTTAACA‑TATGAATTTATTTATTCAAATAATTTTTCtata                                   >  2:3258121/1‑128 (MQ=255)
                                                                                                atttAAAATTTTTAAA‑TAAAAATATT‑TAAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAg                                <  2:5519078/125‑1 (MQ=255)
                                                                                                 gATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCACA‑TTTGAATTGATTTAATCTTATAATTTGTCTATATAGa                               >  2:4187582/1‑128 (MQ=255)
                                                                                                   tataTTTTTTATA‑GAAAAATATTATAA‑‑GTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                             <  2:6059081/125‑1 (MQ=255)
                                                                                                   tAAATTTTTTATA‑TATAAATATTTTATA‑TTTTTTTTTTTTTTTT‑GAACTAACATATAATTTTACCAATTATTAGTATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATg                             <  2:5798628/128‑1 (MQ=255)
                                                                                                     aaTTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCACA‑GATGAATTGATTTCTTCAAATAATTTTTCTATAAACATGt                            >  2:6854738/1‑128 (MQ=255)
                                                                                                      aTTTTTTAAA‑TAAAAATAATAAAAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt                         <  2:5387097/128‑1 (MQ=255)
                                                                                                      aTTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTTGAATTTAAATTTCAAA‑GATGAATTTATTTATTCTAATAATTTGTATATATATATtttt                          >  1:814452/1‑128 (MQ=255)
                                                                                                       ttttttAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑TATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttt                         >  1:2422454/1‑128 (MQ=255)
                                                                                                       ttttttAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGCAAGTTACATATTATTTTAAAATTAATTTTAATTTGAATTTCACA‑GTTGAATGGAGTTCTGCTTATAATTTGTCTATTGAGAtttttt                         >  2:4020874/1‑128 (MQ=255)
                                                                                                        tttttATA‑ATAAAATATTA‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTTCCAATTATTAGAATTTCTATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGttttt                        <  1:3258121/128‑1 (MQ=255)
                                                                                                        tttttAAA‑TAAATATATTA‑ATA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGttttt                        <  1:4194935/128‑1 (MQ=255)
                                                                                                            tAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTTTTGGAAAAAAAATAAAATTTTAACAATTTTTATAATTTAAATTTAAAA‑AAATAATTGAATTATTAAAATAATTTTTAAATAAATATTTTTTTtatt                    >  1:622164/1‑127 (MQ=255)
                                                                                                            tAAA‑GAAAAATATTACAAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTATAATAATTTTTCTATATAGATTTTTTTTatat                   >  2:1042078/1‑128 (MQ=255)
                                                                                                             ctttaaaaaaTATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTAACA‑GATGAATTGATTTCTTCTAATAATTTTTCTATATAGATGTTTTTtata                    >  1:6451691/6‑128 (MQ=255)
                                                                                                              ttttaaaaattttaaaaa‑ttttTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtata                    <  1:918761/124‑1 (MQ=255)
                                                                                                              aa‑GTAAAATATTACAAA‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTatat                   <  1:5231150/128‑1 (MQ=255)
                                                                                                                 taaaaaTATTAATAA‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTa                <  1:5005288/127‑1 (MQ=255)
                                                                                                                  aaaaaTATTACAAC‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATttc                                                      >  2:6599481/1‑89 (MQ=255)
                                                                                                                   aaaaTATTA‑AAA‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTTTATAGATGTTTTTTATATCTaaa              <  2:6490194/128‑1 (MQ=255)
                                                                                                                     aaTATTACAAC‑TTTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAATTTATTATAATTTAAATTTAACA‑TATTAATTGATTTATTATAAAAATTTTTATATATATATTTTTTTTATAACTAAAt             >  1:1963869/1‑128 (MQ=255)
                                                                                                                        atTACAAC‑‑TTTTTTTTTTTTTTTGGAAATAACATATAA‑TTTACCAATTATTAGAATTTAAATTTAAAA‑GATGAATTTATTTATTATAATAATTTGTATATATAGATTTTTTTTATATCTAAATCATTg        >  1:2989274/1‑128 (MQ=255)
                                                                                                                        atTACAAC‑‑‑TTTTTTTTTTTTTTGGAACTAACATAAAATTTAACAAATTATTAGAATTTAATTTTAAAA‑TATAAATTGATTAATTATAATAATTTTTATATATATATTTTTTTTTTATCTAAATCAGtt        >  1:562699/1‑127 (MQ=255)
                                                                                                                          ttcAAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTg        <  2:4711224/126‑1 (MQ=255)
                                                                                                                          taaaatattttttttttttttttGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAAGTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGt         <  2:4304722/121‑1 (MQ=255)
                                                                                                                                attttttttttttttttTGAACTAACATATAATTTTACAAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATctt   <  1:4889667/127‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                
AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACA‑GATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑