BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	311,149	0	T	.	68.3%	1769.5 / inf	1285	intergenic (‑72/‑242)	JCVSYN2_01300/JCVSYN2_01305	hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand): ref base T (264/142); new base . (474/402); total (739/546)
Fisher's exact test for biased strand distribution p-value = 2.63e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.46e-02

Only 100 of 1805 total aligned reads displayed.

GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276

gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACCCCCCATATTAAAAAATAAAATTCTTGTTGCATACGATTCAAAACATATATACCATAcattcat‑‑t                                                                                                                                 >  2:3595866/1‑128 (MQ=255)

gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATAAAACATAcattcat‑‑t                                                                                                                                 >  1:2699969/1‑128 (MQ=255)

  aCCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tat                                                                                                                               >  1:6421220/1‑128 (MQ=255)

       ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑tatatata                                                                                                                          >  1:1001654/1‑128 (MQ=255)

        tGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatat                                                                                                                         >  1:3231964/1‑128 (MQ=255)

        tGTAATAACTAATCAAAATCAAATTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATAAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatat                                                                                                                         <  1:531740/128‑1 (MQ=255)

           aataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatata                                                                                                                      >  2:5600066/1‑128 (MQ=255)

           aataaCTAATAAAAATTAACTTAAAATTGTAATTAAATTTTTAATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑tatatatatata                                                                                                                      <  2:6091203/128‑1 (MQ=255)

             tatcTAATCAAAATGAACTTATAATTGTAATAAACTTTTTCATTTTACACACCCATTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                    <  1:1246715/125‑1 (MQ=255)

             tatcTAATAGAAATTAACTTAAAATTGTAATTAACTTTTTAATTTTACAAACCACTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                    <  1:933018/125‑1 (MQ=255)

             taaataaaCTAAATTAAATAAAAATATTAATAAAATATTTCATTTTAAACACACCTTATTAAAAAAAAAAATAATTTTTAAATAATATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                    <  1:5865661/128‑1 (MQ=255)

             taaCTAAGCCAAATTAACTTAAAATTGTAATTAACTTTTTCATTTTACAAACACCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                    <  1:1955157/128‑1 (MQ=255)

             taaCTAAAAAAAATTAACATAAAATTATATTTAACATTATCATATTACACACCCCTTATAAAAAAAAAAAAAACTTTTTACATACTATTCAAAACATATATAACATACATTCAA‑‑aatatatatatata                                                                                                                    <  1:2099422/128‑1 (MQ=255)

              aaCTAATAAAAATGAAATTAAAATTTTAATTAAATTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTAAATACGATTAAAAACATATATAACATACATTCAT‑‑tatatatatatatat                                                                                                                   <  2:494950/128‑1 (MQ=255)

               aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatata                                                                                                                  >  2:1946003/1‑128 (MQ=255)

               aCTAATACAAATTAAATAAAAATAGAAATTAAATTATTCAATTAACACACACCTTATTAAAAAAAAAAAAACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑tatatatatatatata                                                                                                                  <  1:4310194/128‑1 (MQ=255)

                cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTATAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatat                                                                                                                 <  1:6816678/128‑1 (MQ=255)

                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatgtatata                                                                                                                >  1:4107722/1‑128 (MQ=255)

                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatata                                                                                                                >  1:2573959/1‑128 (MQ=255)

                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatataat                                                                                                                <  2:6383439/128‑3 (MQ=255)

                 tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATATAATACTTGTTACATACGATTCAAAACATATATAACATACATTCTT‑‑tatatatatatatatata                                                                                                                >  2:2057338/1‑128 (MQ=255)

                  aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatat                                                                                                               <  1:3844912/128‑1 (MQ=255)

                  aaTACAAATTAAATTAAAATTGTAATTAAATATTTTATTTTACACACACCTTATTAAAAAATATAATAATTGTTACATACGATTCAAAACATATATAACATACATTCTT‑‑tatatatatatatatatat                                                                                                               <  2:1491178/128‑1 (MQ=255)

                    tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                             >  1:3098613/1‑128 (MQ=255)

                        aaTTAACTTATAATTTTTATTAACTTTTTCATTATAAACTCCAATTATTAAAAAAAATAATAATTGTTAAATACGATTCAAAAAATTTATAACATACATTTAT‑‑tatatatatatatatatatatataa                                                                                                         <  2:2945154/128‑2 (MQ=255)

                        aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAATACATATATAACATACATTCAT‑‑tatatatatatatatatatatataa                                                                                                         >  1:1825974/1‑127 (MQ=255)

                        aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatat                                                                                                         >  2:3867272/1‑128 (MQ=255)

                         aTGATCATAATAGTGTAAATATCTTTTTTATTTTAGACACCCCTAATTAAAAAATAAAATACTTGTTACAAACGATTGAAAACATATATAAAATACATTCAT‑‑taaatatatatatatatatataatgc                                                                                                        <  2:4297856/128‑5 (MQ=255)

                         aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatttt                                                                                                        >  2:5131978/1‑125 (MQ=255)

                         aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataat                                                                                                        >  1:1170816/1‑126 (MQ=255)

                         aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTAACATACGATTCAAAACATATAAAACAGACATTCAT‑‑tatatatatatatatatatatatata                                                                                                        >  2:3717925/1‑128 (MQ=255)

                          tGAAATTAAAATTTTAATTAACTTTTTAATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatg                                                                                                       <  2:3192231/128‑4 (MQ=255)

                            aaCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgca                                                                                                     >  2:4173609/1‑123 (MQ=255)

                              cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatacagaaag                                                                                                   >  1:3417320/1‑121 (MQ=255)

                                 ataaTTTTTATTATCATTTTTATTTTAAACACACATTATTAAAAAATAAAATAATTTTTAAATAATATTCTAAAAATATATAAAATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATg                                                                                              <  1:796655/126‑1 (MQ=255)

                                  aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATA‑‑GCAATATGt                                                                                             >  2:2687745/1‑128 (MQ=255)

                                   aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTa                                                                                            >  2:5433234/1‑128 (MQ=255)

                                      tGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATAAATAAAGCAATATATaa                                                                                           >  2:3330177/1‑128 (MQ=255)

                                        tAATTATATTTTTAATTATACACACAAAATATTAAAAAATAAAAAAATTTATAAATAATATTAAAAAAATATATAAAATA‑A‑‑‑AT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGaaa                                                                                     <  1:3681635/128‑1 (MQ=12)

                                        tAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGa                                                                                       >  2:3047058/1‑128 (MQ=255)

                                             aaCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                    >  1:6260205/1‑96 (MQ=255)

                                             aaCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAATCATATATAACATACATTCAT‑‑TATATATATATATATATATATAAATAA‑‑CAATATATAAATCaaaaaa                                                                                  >  2:1378893/1‑126 (MQ=255)

                                             aaCTTTTTCATATAACACACACAATATAATAAAATAAAATAATTGTTAAATAATATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATg                                                                                <  1:2812864/128‑1 (MQ=255)

                                              aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AAT‑CAATATTTAAATGAAAatat                                                                                 >  2:2232615/1‑128 (MQ=255)

                                              aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCTATATGTAAATGAAAatat                                                                                 >  2:5922908/1‑128 (MQ=255)

                                                     taatttATACACACCTTATTAAAAAATATAATATTTTTGATATAATATTTAAAACATATATAACATATATTC‑T‑‑T‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataa                                                                          <  1:6103901/125‑1 (MQ=255)

                                                     aaTTTTACACACAAATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataata                                                                        <  2:2559991/127‑1 (MQ=255)

                                                      aTTTTACACACAGCTTATTAAAAAATAAAATACTTTTTAAATACTATTCAAAACATATATAACATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                         <  1:4412203/128‑1 (MQ=255)

                                                        tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATTTAAAATAAAATATGGTATAATAg                                                                       >  1:2209524/1‑128 (MQ=255)

                                                        tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTATATGAATATATGGTATAATAg                                                                       >  2:4405403/1‑128 (MQ=255)

                                                        tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAACATATGTTATAATAg                                                                       >  2:1834812/1‑128 (MQ=255)

                                                         ttACACCCCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCTATATCTAAAATAAAATATGTTATAATAGc                                                                      >  2:4544611/1‑128 (MQ=255)

                                                          tACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTAAATATGTAAATGAAAATATGGTATAATAGCa                                                                     >  2:4831476/1‑128 (MQ=255)

                                                           acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATA‑‑GAAATATATAAAAGAAAATATTTAataatataaa                                                                    >  1:1400277/1‑124 (MQ=255)

                                                            tacaaaccTTATTTAAAAATAAAATAATTTTTTCATACTATTCAAAAAATATATATCATAAATTAAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCa                                                                     <  2:671161/122‑1 (MQ=37)

                                                            cacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATAAAATATTTAAATTAAAATATCTTATAATAgat                                                                     >  2:6587012/1‑126 (MQ=38)

                                                              cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataa                                                                                                         >  1:3975593/1‑89 (MQ=255)

                                                              cacCCCTTATTAAAAAATAAAATACATGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑TATATATATATATATATATA‑A‑ATAAAGCAATATAAAAATGAATATATGCTATAATAACAcccc                                                                 >  2:5664918/1‑127 (MQ=255)

                                                                ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGtt                                                               >  1:5197910/1‑128 (MQ=255)

                                                                ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGAAACCGtt                                                               >  2:5230347/1‑128 (MQ=255)

                                                                caacTTATTAAAAAATAAAATAATTGTTAAATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGtt                                                               <  2:4690220/125‑1 (MQ=255)

                                                                   cTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                          >  2:6206521/1‑128 (MQ=255)

                                                                     tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATATAAATAAATATTTAAAAGAAAATATTTTATAATATCAAACAttt                                                              >  2:90940/1‑128 (MQ=255)

                                                                     tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAg                                                        <  1:2445238/128‑1 (MQ=255)

                                                                     tattaAAAAATAAAATAATTGTTATATAATATTCAAAAAATATATAAAATATATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                          <  2:2780479/128‑1 (MQ=255)

                                                                      attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                       <  2:5309451/128‑1 (MQ=255)

                                                                        taAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑ATAA‑‑‑AATATATATAATAAAATATTTTATATTAGAAACATTTTATAAAATaa                                                     >  1:2987274/1‑128 (MQ=255)

                                                                         aaaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAAGTAAATTAAAATATTCTATAATAGCAAACGTGAATAAAgaa                                                      >  2:5040354/1‑126 (MQ=255)

                                                                          aaaaaTAAAATATTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                   <  2:81197/128‑1 (MQ=255)

                                                                           aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATTTAAATGAAAATATGGTATAATAGCAACCTTTTATAAAGTaaa                                                    >  1:4531291/1‑128 (MQ=255)

                                                                           aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                    <  1:6704027/128‑1 (MQ=255)

                                                                             ataaaaataCTTGTTATATACTATTCAATACATATATAAAATACAGTCAT‑‑T‑T‑TTTATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                  <  2:1287308/125‑1 (MQ=255)

                                                                              ataaaataATTTTTAAATAATATTAAAAACATATATAACATACATTAAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                   <  2:2419986/128‑1 (MQ=38)

                                                                               taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTATATGAATATATGATATAAAAGCAACCGATTATTATATaaaaaaa                                                >  2:6844764/1‑128 (MQ=255)

                                                                                aatatatTTTTTAAATAAGATTATAAAAATATATAACATAAATTAAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaa                                                 <  2:3443179/125‑1 (MQ=37)

                                                                                aaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATACAATATGTAAATGAAAATATGGTATAATAGCAACCGTATAGAAAGTaaaaca                                                 >  1:5725227/1‑126 (MQ=255)

                                                                                      cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATTCAATATTTAAATGAAAATATGTTATAATATAAACAGTTTATAAAATAAAAAAATAGTAAata                                       >  1:4204974/1‑128 (MQ=255)

                                                                                      cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATCCAATATGTAAATGAATATATTGTATAATAGACACCGTTTATAAAGTAATAAAATAGTAAata                                       >  1:4929535/1‑128 (MQ=255)

                                                                                       ttGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AA‑GAAATATTTAAATGAAAATATGTTATAATATAAACATTTTATAAATTAAAAAAATATTatat                                        >  2:1742411/1‑128 (MQ=255)

                                                                                        ttttaaattagATTAAAAAAAAATATAAAATAAATTCAT‑‑TATATATAT‑TAT‑TATAAATATATAATTCAATATGTAAATGAAAATATGGTATAAAAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       <  2:5504043/118‑1 (MQ=255)

                                                                                        tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAATTGAATATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                       >  2:5796349/1‑128 (MQ=255)

                                                                                        tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAAAATGTAAATGAAAATATGTTATAATAGAAACCAGTTATATAGTAAAAAAATAGtatata                                       >  1:4666600/1‑128 (MQ=255)

                                                                                          ttACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                   >  1:6548224/1‑128 (MQ=255)

                                                                                             tatatGATTCAAAACATATATATCATACAATCAT‑‑TCTAAATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtac                                    <  1:6620812/127‑1 (MQ=255)

                                                                                             cATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAAACTTTTATAAAGTAAAAAAATATTATATAtacta                                  >  1:2313618/1‑128 (MQ=255)

                                                                                              ataataTTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATATCAACCGTTTATAAAGTAAAAAAATAGTAAATAtactac                                 <  1:4825990/123‑1 (MQ=255)

                                                                                                  gATTCAAAACGTATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAATTAAAAAAATAGTAAATATACTACTTAt                             >  1:5616993/1‑128 (MQ=255)

                                                                                                  gATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATATCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTAattatta                           >  1:1477244/1‑127 (MQ=255)

                                                                                                  gATTCAAAACATATATAACATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAt                             <  2:1609274/128‑1 (MQ=255)

                                                                                                   aTTAAAAAAAAATATAAAATAAAATAAA‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTa                              <  1:5067103/128‑1 (MQ=255)

                                                                                                        aaaCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTAAATATGTAAATTAAAATATGGTATAATAAAAAACGTTTATAAATTAAAAAAATAGAAAATATACTACTTATTTAAta                       >  2:4027607/1‑128 (MQ=255)

                                                                                                        aaaCATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATGTATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                     >  1:5966420/1‑128 (MQ=255)

                                                                                                           cATATATAAAATACATTC‑T‑‑T‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaata                    <  2:1183822/128‑1 (MQ=255)

                                                                                                             tatataACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                  >  1:1704927/1‑128 (MQ=255)

                                                                                                                    catacatTCATTATATATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACATTTTATAAATTAAAAAAATAATAAATATACTAATTATTTAATAATAAAATc               >  1:1593160/1‑128 (MQ=255)

                                                                                                                     atacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGAAACAGTTTATAAAGTAAAAAAATATTAAATATACTACTTATTTACTAATAAAATCTAttt          >  1:3534943/1‑128 (MQ=255)

                                                                                                                      tacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTATATATACTACTTTTTTACTAATAAAATCTAtttt         >  2:6498740/1‑128 (MQ=255)

                                                                                                                      tacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATATCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAATATATAtttt         >  1:2911696/1‑128 (MQ=255)

                                                                                                                           tcat‑‑tATATATATATATATATATATATATAATGAAATATTTAAATGAAAATATGTTATAATAGCAACCGTTTATAAATTAAAAAAATAGTAAATATACTAGTTATTTACTAAAAAAATCTAattttta      >  2:1064032/1‑126 (MQ=38)

                                                                                                                             at‑‑tATATATATATATATATATATATATAATGCAATATGTAAAAGAAAATATTGTATAATAGCAACAGTATATATAGTAAAAAAATATTAAATATACTAATAATTTAATAATAAAATATATTtttatat    >  1:5422625/1‑126 (MQ=37)

GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAA  >  CP016816/311022‑311276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`