BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP016816	= 437880	748 (0.380)	572 (0.230) +ATAT	104/188	13.5	36.7%	intergenic (‑184/+238)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
*	?	CP016816	437881 =	1076 (0.420)	572 (0.230) +ATAT	104/188	13.5	36.7%	intergenic (‑185/+237)	JCVSYN2_01985/JCVSYN2_01990	glycosyl transferase/ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1660 total aligned reads displayed.

ATGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437752‑438007

 tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑g                                                                                                                                     >  2:4595103/1‑128 (MQ=255)

 tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑g                                                                                                                                     >  2:159670/1‑128 (MQ=255)

 tGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑g                                                                                                                                     >  2:1449471/1‑128 (MQ=255)

   aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑at                                                                                                                               >  2:750463/1‑128 (MQ=255)

   aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑at                                                                                                                               >  2:700319/1‑128 (MQ=255)

   aaaCTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACATATAGAGTT‑AAT‑‑G‑‑‑‑at                                                                                                                               >  1:3807644/1‑128 (MQ=255)

    aaCTTATTTTTGTAGTTGTAAGTTTCATTTATAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAAGAAAAGCAAAAACCTCCATATTACCTATATAGTT‑AAT‑‑G‑‑‑‑ata                                                                                                                              >  1:1654782/1‑128 (MQ=255)

       ttATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATTAATCAAAGCAAAATCCTCCATATTACCGATAGAGTT‑AAT‑‑G‑‑‑‑atatat                                                                                                                           >  1:3869572/1‑128 (MQ=255)

        tATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAATCCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatata                                                                                                                          >  2:3910256/1‑128 (MQ=255)

         aTTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGAT‑AAT‑‑G‑‑‑‑atatatat                                                                                                                         >  1:4935971/1‑128 (MQ=255)

          tttttGTAGTTGTAAGTTTCATTTTTAATAGAGAGTAGATATAAAAATTGTATTGTTAAAATAAATATTTTAGTCAATTCAGCTAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatata                                                                                                                        >  1:2872123/1‑128 (MQ=255)

          tttttGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTACATATTACATATAGAGTT‑AAT‑‑G‑‑‑‑atatatata                                                                                                                        >  1:3184425/1‑128 (MQ=255)

             ctacaaaaatAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatat                                                                                                                     >  2:2979204/10‑128 (MQ=255)

               gTATTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAAGCAAAAAACTCCATATAACCTATAGAGAT‑AAT‑‑G‑‑‑‑atatatatatatat                                                                                                                   <  1:4626753/128‑1 (MQ=255)

               gTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatat                                                                                                                   <  2:2870294/128‑1 (MQ=255)

                 aGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatat                                                                                                                 >  2:207586/1‑128 (MQ=255)

                  gTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGCAAATCAAAAACCTCCATATTACATATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatata                                                                                                                <  2:3709849/128‑1 (MQ=255)

                     gTAAGTTTCATTTTTAATAATTATTAGATATAAAAATTGTATTTTTAAAATATATATTTTATTTAATGAATCAAATCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatat                                                                                                             <  1:1812191/128‑1 (MQ=255)

                     gTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTATAAAATAAAAATTTTAGTAAATGAAGCAAATCAAAAACCTCCATATTACATATAGATTT‑AAT‑‑A‑‑‑‑atatatatatatatatatat                                                                                                             >  1:4315821/1‑128 (MQ=255)

                      tAAGTTTCATTTATAATAAATATTAGAAATAATAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCAATATTACCTATACAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatata                                                                                                            >  1:4863130/1‑128 (MQ=255)

                        aGTTTCATTTTTAATAAATATTAGAAATAAAAATTTTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑TAT‑‑G‑‑‑‑atatatatatatatatatatata                                                                                                          <  2:1680785/128‑1 (MQ=255)

                         gTTTCATTTTTAATAAATATTAGATATAAAAATTTTATTTTTAAAATATATATTTTAGTAAAAGAATAAAACAAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatat                                                                                                         <  2:2209587/128‑1 (MQ=255)

                          tttAATTTTTTATAAATATTATAAATAAAAAATTTTTTTTTAAAATAAATATTTTATGAAATTAATAACATCAAAAACCTCCATATTACATATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatata                                                                                                        <  2:1389730/128‑1 (MQ=255)

                          tttAATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAATCAAATCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatata                                                                                                        <  2:4131377/128‑1 (MQ=255)

                            tCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATGAATCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatatata                                                                                                      <  1:1722536/128‑1 (MQ=255)

                            tCATTTTTAATAAATATTAGAAATAAAAAATGTATTTTTAAAATAAATATTTTAGTAAATGAATAAAAGCAAAAACATCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatatata                                                                                                      <  1:5381622/128‑1 (MQ=255)

                             tttttttAATATATATTATATATAAAAATTTTTTTTTTAAAATATATATTTTTTTAATTTTATCAAAGAAAAAAACTATATATTAAATATAGAGTT‑AAT‑‑T‑‑‑‑atatatatatatatatatatatatatat                                                                                                     <  2:1810308/126‑1 (MQ=255)

                             cATTTTTAAAAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGCAAATGAATCAAAGCAAAAACCTCAATATTACCTATAGAGAT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatatatat                                                                                                     <  1:1464519/128‑1 (MQ=255)

                              aTTTTTAATAAATATTAGAAATATAAATTTTATTTTTTAAATAAATATTTTATTAAATTAATCAAATAAAAAACATTAATATTATATATAGAGAT‑TAT‑‑T‑‑‑‑agatatatatatatatatatatatatata                                                                                                    <  2:1981888/128‑2 (MQ=255)

                              aTTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatatatata                                                                                                    >  1:352388/1‑127 (MQ=255)

                               tttttATTATATATTTTATATAAAAAATTTATATTTATAAAAAATATATTTTTATATAATTACAAACAAAAAAATCTATATTAAATATATAGTT‑ATT‑‑T‑‑‑‑atatatatatatatatatatatatatgcaa                                                                                                   <  2:3470814/128‑5 (MQ=255)

                                 tttAATATATATTAGATATAAAAATTGTATTTTTAAAATATATATTTTATGAAATTAAGCAAATAAAAAACCTCCATATTAACTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatatcattaact                                                                                                 <  2:883495/128‑9 (MQ=37)

                                   taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTATGAAATTAAGAAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGa                                                                                             <  1:5244676/128‑1 (MQ=255)

                                   taataaATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatataataaacagaaa                                                                                               >  2:2422300/1‑117 (MQ=255)

                                      taaataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCa                                                                                          >  2:2347429/1‑128 (MQ=255)

                                        aataTTATAAAAAAAAATTTTATTTTTATAAAAAATATATTATTTAATGAATCAAATAAAAAAACTCTATATTAACTATAGAGTT‑AAT‑‑T‑‑‑‑atatatatatatatatatatatatatatatatgcaagcg                                                                                          <  2:1278414/128‑12 (MQ=255)

                                        aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCa                                                                                          >  1:951044/1‑128 (MQ=255)

                                        aataTTAGAAATAAAAATTGTATTTTTAAAATAAATATTATAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatatatatatatatattcaagagat                                                                                          >  2:1917280/1‑117 (MQ=255)

                                          tatTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑‑‑GTATATATATATATATATATATATGCAAGCGATCAGCATaa                                                                                    >  2:27054/1‑128 (MQ=255)

                                           atTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                   <  1:1891326/128‑1 (MQ=255)

                                            ttAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAATAGAtcatcaa                                                                                      >  1:245640/1‑127 (MQ=255)

                                             tatataTAAAAATTGTTTTTTTAAAATAAATATTTTAGGTAATGACGATAANATAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATa                                                                                     <  2:4919450/123‑1 (MQ=255)

                                             tAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATaaa                                                                                   >  2:3200879/1‑128 (MQ=255)

                                               taaaTAAAAATTGTATTTTAAAAAAAAATATTTTATGAAATGAAGCAAAGCAAAAAACTCCATATTAAATATAGAGTT‑AAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTg                                                                             <  2:1154441/127‑1 (MQ=255)

                                               gAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGATAGAGATCATAATaaa                                                                                   >  2:512213/1‑128 (MQ=255)

                                               gAAATAAAAATATTATTTTTAAAATAAATATTTTATGAAAATAAGAAAATAAAAAAACTCTATATTACATATAGAGTTAAATA‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATa                                                                                     <  1:1552771/128‑1 (MQ=255)

                                                aaaTAAAAATTGTATTTTTAAAATAAATATTTTAGTAAATGAAGAAAATCAAAAACCTCCATATTACCTATATAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATaaaa                                                                                  <  1:1098058/128‑1 (MQ=255)

                                                   tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑GAT‑‑ATATATATATATATATATATATATATATACAAGCGATCAGCATAAAAt                                                                                 >  2:4695026/1‑128 (MQ=255)

                                                   tAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑atatatatatatatatataaatata                                                                                                        <  1:4195131/103‑1 (MQ=255)

                                                     aaaaTTGTATTTTTAAAATAAATATTTTATGAATTTAACCAAAGAAAAAATCTACATATTATCTATAGAGTT‑AAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTg                                                                             <  2:4800343/128‑1 (MQ=255)

                                                     aaaaTTGTATTTTTAAAATAAATATTTTAGTAAATGAACAAAAGAAAAAAAATCAATATTAACTATAGAGTT‑AAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTg                                                                             <  1:3471034/128‑1 (MQ=255)

                                                          tGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCg                                                                                              <  2:3304000/106‑1 (MQ=255)

                                                            tttttttAAAATAAATATTTTATTAAATGAATAAAATAAAAAAACTATATATTAAATATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTa                                                                      <  1:2188777/126‑1 (MQ=255)

                                                              tttttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATATAGTT‑AAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGAAAGCGATCAGCATAATATGGAGAATTTTATATATGat                                                              >  2:2774588/1‑127 (MQ=255)

                                                               ttttAAAATAAATATTTTAGTATATGAATCAAATCAAAAAACTCAATATTACCTATAGAGTT‑AAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGAt                                                                   <  1:1172946/128‑1 (MQ=255)

                                                                tttAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATTGTGAAATTTAGATCTg                                                                >  1:3095932/1‑128 (MQ=255)

                                                                  tAAAATATTTATTTTAAGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATTCAAGCTATCTGCATATATTTGTCATATATAGATCTg                                                                >  1:1370820/1‑128 (MQ=255)

                                                                    taattaataTTTTATTAAATGAAGCTAAGCAAAAAAATCCATATTTCCTATAGAGTT‑AAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                              <  1:576919/127‑1 (MQ=255)

                                                                    aaataaatATTTTATGAAATTAAGATAAGCAAAAAACTCCATATTAACTATAGAGTT‑AAT‑‑‑‑‑‑‑‑TATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGtt                                                            <  2:3093414/128‑1 (MQ=255)

                                                                    aaataaatATTTTAGTATATGATTAAAAGAAAAAACCTACATTTTTTATATAGAGTT‑TAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAg                                                              <  1:5137853/128‑1 (MQ=255)

                                                                           tatTTTAGGAAATGAAGCAAAGCAAAAACCTCTATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑‑‑ATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaaa                                                   <  2:3403563/128‑1 (MQ=255)

                                                                            atTTTATGAAATTAATAAAATAAAAAACATCAATATTAAATATAGAGTT‑ATT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                    <  1:699842/128‑1 (MQ=255)

                                                                             ttttAGGAAATTAAGCAAAGCAAAAAAATCCATATTATCTATAGAGTT‑TAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTa                                                     <  2:4520519/128‑1 (MQ=255)

                                                                             ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGAAATGAGtttttgt                                                       >  1:3705931/1‑123 (MQ=255)

                                                                             ttttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAATCGATCACCATAAAATGGTTAAATATATATCTGAGTTTGtataa                                                     >  2:3533496/1‑124 (MQ=255)

                                                                              tttAGTAAATGAATCAAATAAAAAACCTCAATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                    <  2:402093/128‑1 (MQ=255)

                                                                              tttAGAAAATGAATCAAAGCAAAAAAATAAATATTAACTATATAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTaa                                                    <  2:4998590/128‑1 (MQ=255)

                                                                               ttAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCACCATAAAATTGTTAAATTTATATCTGATTTGGTAATAAAtt                                                 >  2:1079213/1‑128 (MQ=255)

                                                                                  gtaaaTGAAGAAAAGAAAAAATCTCAATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAAttt                                                <  1:2613344/126‑1 (MQ=255)

                                                                                  ggAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGt                                              <  1:5038000/128‑1 (MQ=255)

                                                                                   gAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGAATAAAATTGTGAAATTTAGATCTGAGTTTGTCTTAAATTTg                                               >  1:336699/1‑128 (MQ=255)

                                                                                     aaTGATTCAAAGCAAAAACCTAGATATAACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑‑‑‑‑ATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGttttt                                       <  1:1971050/128‑1 (MQ=255)

                                                                                      aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCATCATAAAATGGTGAAATTTAGATCTGATTTGTTCTTAAAttttt                                              >  2:4214855/1‑126 (MQ=255)

                                                                                      aTGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGAATAAAATGTTGATATTTAGATCTGAGTTGTTCTAAAATTTGTAg                                            >  1:4765195/1‑128 (MQ=255)

                                                                                       tGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTCTCTTAAATTTGTAGttt                                         >  1:814216/1‑128 (MQ=255)

                                                                                         aagcaaagcaAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAATTTTAGATCTTAGTTGGTCTTAAATTTGTAGttt                                         >  1:2511231/1‑128 (MQ=255)

                                                                                            caaaccaaaAACCTCCATATTACCTATAGAGTT‑AAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGtttt                                        <  2:4429311/128‑1 (MQ=255)

                                                                                            aaaataaaaaaGCACCATATTATATATATAGAT‑AAT‑‑A‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                      <  1:2936631/122‑1 (MQ=255)

                                                                                             aaagcaaaAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCTATCATAAAAAAATTGTGAAATTTATATCTGAGTTTGTCTTAAATTTATAGTTtttat                                     >  1:4463049/1‑128 (MQ=255)

                                                                                              aagcaaaAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTATATTTGTAGtttttttt                                    >  1:3280259/1‑128 (MQ=255)

                                                                                              aagaaaaAAACTCTATATTAAATATATAGTT‑ATTTAT‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTttta                                      <  2:2537450/128‑1 (MQ=255)

                                                                                               agcaaaAACCTCCATATTACCTATAGAGTT‑AAT‑‑GAC‑‑ATATATATATATATATATATATATATATTCAAGCGATCAACATAAAATGGTTAAATTTAGATCTGAGTTGGTATTAAATTTATAGTTtttat                                     >  2:5349306/1‑128 (MQ=255)

                                                                                                 caaaAACCTCCATATTAACTATAGAGTT‑AAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttat                                     <  2:5233426/128‑1 (MQ=255)

                                                                                                 aaaaaaaCTACTTATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAg                               <  1:1262560/127‑1 (MQ=255)

                                                                                                  aaaaaTATCTATATTACCTATAGAGTT‑ACT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttattta                                  <  1:2074116/128‑1 (MQ=255)

                                                                                                  aaaaaCCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTtttatt                                    >  2:432525/1‑124 (MQ=255)

                                                                                                  aaaaaCCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑AT‑T‑TATATATATATATATATATATATGCAAGCGATCATCATAAAATTGTGAAATTTATCTCTGAGTTGGTCTTATATTTGTAGTTTTTATTtatatt                              >  2:263417/1‑126 (MQ=255)

                                                                                                   cttccgatcttatTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAg                               <  1:1013660/118‑1 (MQ=255)

                                                                                                         tCCATATTACCTATAGAGTT‑AAT‑‑GAT‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGATATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTta                           >  1:4543861/1‑128 (MQ=255)

                                                                                                          ccATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATACACGCGCACCGCATAAAATGGTGAAATTTATATCTGAGTTGGTCTTAAATTTTTAGTTTTTTTTTATAGtatatat                        >  2:3785355/1‑127 (MQ=255)

                                                                                                          ccATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTTGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                      >  1:2706835/1‑128 (MQ=255)

                                                                                                            atcttAACTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                      <  2:5427615/125‑1 (MQ=255)

                                                                                                            atatTACCTATAGAGTT‑AAT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGtt                    >  1:3949837/1‑128 (MQ=255)

                                                                                                                taacTATAGAGTT‑AAT‑‑GATATATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAg                      <  1:229929/125‑1 (MQ=255)

                                                                                                                tACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCAGCATAAAATAGTGAAATTTATATCTGAGTTTATCTTAAATTTGTAGTTTTTATATTTAGTTTATAAAGTtaa                  >  1:5467542/1‑128 (MQ=255)

                                                                                                                     ataGAGTT‑ATT‑‑G‑‑‑‑‑‑ATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa           <  1:4375376/128‑1 (MQ=255)

                                                                                                                       atagTT‑TAT‑‑T‑‑‑‑ATATATATTTAAATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa           <  2:559134/126‑1 (MQ=255)

                                                                                                                       agagTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTa           <  1:4078849/128‑1 (MQ=255)

                                                                                                                         agTT‑AAT‑‑T‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGa         <  1:238036/128‑1 (MQ=255)

                                                                                                                              aaT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGAAAGCGATCATAATAAAATTTTGAAATAAATATCTGATTTTTTATTAAATTTGTAGTTTTTATATATATTTTATAAAGTAAATTATTTAGAtttt     >  1:3618107/1‑128 (MQ=255)

ATGAAACTTATTTTTGTAGTTGTAAGTTTCATTTTTAATAAATATTAGAAATAAAAATTGTATTTTTAAAATAAATATTTTAGGAAATGAAGCAAAGCAAAAACCTCCATATTACCTATAGAGTT‑AAT‑‑G‑‑‑‑ATATATATATATATATATATATATATATGCAAGCGATCAGCATAAAATGGTGAAATTTAGATCTGAGTTGGTCTTAAATTTGTAGTTTTTATTTATAGTTTATAAAGTTAATAATTTAGATTTTTAA  >  CP016816/437752‑438007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.