Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4940AT51.9% 26.7 / inf 464intergenic (+272/‑403)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (66/157);  new base T (86/155);  total (152/312)
Fisher's exact test for biased strand distribution p-value = 1.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.51e-02

Only 100 of 557 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621
                                                                                                                                 |                                                                                                                                
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAATACC‑‑ATTAAA‑‑AATT‑aaaaataa                                                                                                                        >  2:4250496/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAAAAAAAAAAAAAAATCCCC‑‑‑TAAA‑‑AAAT‑taaaaaaaa                                                                                                                       >  2:2498196/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTAATATAATATA‑TATCATCTAAATCAATTTTATTATTAGTTAATATTA‑AAAAATAAAAAAAAAAAAATCACATT‑‑‑AA‑‑AAAT‑aaaaaaaaa                                                                                                                       >  2:2011878/1‑128 (MQ=255)
        agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTAATTTTTTAATATAC‑AAAAATAAAAAAAAAA‑AAACCCC‑‑‑TAAA‑‑AAAT‑taaaaaaaaaaaa                                                                                                                   >  2:1691028/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAAAAACCC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaa                                                                                                                    >  2:5507411/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCTTTATATATTTTTTTATTTTTTAATCTAC‑ACAAATAAAAAAAAAACAATAACC‑‑TTAAA‑‑AAAT‑aaaaaaaaaaaaa                                                                                                                   >  1:2287227/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAATAAAAAAAAAACAATCACC‑‑ATAAA‑‑AATT‑aaaaaaaaaaaaa                                                                                                                   >  2:1544763/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAATCCCC‑‑ATAAA‑‑AATT‑aaaaaaaaaaaaa                                                                                                                   >  2:5251497/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTATTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAAAACCC‑‑ATAAA‑‑AATT‑aaaaaaaaaaaaa                                                                                                                   >  2:4661901/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTAGTGATCTATTTTTTTATTTTTTTATATTC‑ACAAATAAAAAAAAAACAAT‑‑AAAATTAAA‑‑AATT‑aaaaaaaaaaaaa                                                                                                                   >  1:710507/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑TATCCTAGTGATCTATTTTTTTATTTTTTTATATTA‑AAAAATAAAAAAAAAAAAATAAAATTAaaaa‑‑aaaa‑aaaaaaaaaaaa                                                                                                                    >  1:2832237/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAAAAAAACC‑‑ATAAA‑‑AAAT‑aaaaaaaaaaaaaaa                                                                                                                 >  1:2879955/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATA‑GATCCTCGTTATCTATTTATTAATTTAATTATATTC‑AAAAATAAAAAAAAAACAAAACAC‑‑TAAAA‑‑AAAT‑aaaaaaaaaaaaaaa                                                                                                                 >  2:291104/1‑128 (MQ=255)
            aaGGTTAATTAAAAAACCATAAACTTAATAAATCTTATAATGTA‑GATCCTCGTGATCTATTATTTTATTTGTTTATCTAC‑ACAAATAAAAAAAAAACAATCAAC‑‑TTAAA‑‑AATT‑aaaacaaaaaaaaaa                                                                                                                 >  2:576089/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAATAAAC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaa                                                                                                                >  1:2018722/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATACTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaa                                                                                                                >  2:2316913/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑TATACTCTTTAACTATATTATTATTTTATTATCTAC‑ACAAATAAAAAAAAAAAAAACACC‑‑AAAAA‑‑AAAT‑aaaaaaaaaaaaaaaaa                                                                                                               >  2:3493432/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATATGTTTATCTTC‑ACAAATAAAAAAAAAACAATCCCC‑‑ATAAA‑‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                               >  1:4400487/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTA‑TATCCTCGTGATCTATTTTTTTATTTTTTTATATTC‑AAAAATAAAAAAAAAACAAAACAATT‑‑‑AA‑‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:147591/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAAAATACC‑‑AATAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                            >  1:4472848/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTAGTTTATCTTA‑ACAAATAAAAAAAAAAAAAAAACCATAaaaa‑‑aaaa‑aaaaaaaaaaaaaaaaaa                                                                                                              >  2:1209751/1‑128 (MQ=255)
                 taattaaAAAAACAAAAAATTAATAAATATTATAATTTATAATCCCTGTTA‑ATATTTTTTTTATTTTTTAAAATA‑AAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                            <  1:4655357/128‑1 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAATAAAAAAAAAACAATAAC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:2700402/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAATCCCATTAAAAA‑‑Taaa‑aaaaaaaaaaaaaaaaaaa                                                                                                             >  1:5509461/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATACTTATAATGTA‑GATCCTCGTGATCTATTTATTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAAAAACAACTTaaaaa‑‑aaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                             >  2:1144124/1‑128 (MQ=255)
                  aattaaAATAAAAAAAAATAAATAATTATTATAATTTA‑TAACATCTTTATTTATTTTTTTATTTTTTTATTTTC‑AAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                           <  1:391541/128‑1 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTACAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAAAATCCC‑‑ATTAAA‑‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:5061399/1‑127 (MQ=255)
                     taaAATACAATAAACTTAAAAATTAATATAATTTA‑TAACCTAGTGATCTATTTTTTTATTTTTTTATATTA‑ACAAATAAAAAAAAAA‑AAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTaa                                                                                                       <  1:1377479/128‑1 (MQ=255)
                      aaaaaaaactAAAATTAATAAATCTAATAAATTA‑CATCCAAGTGAAATATTTTTTTATTTTTTTATCTTC‑ACAAATAAAAAAAAAAAAAACCCC‑ATAAAA‑‑AAAA‑AAAAAAAAAAAAAAAAAAAAACTa                                                                                                        <  2:2814316/119‑1 (MQ=255)
                      aaaaTAACTTAAAATTAATAATTATTTAAATTTA‑GAACCTTATTTTCTATTTTTTTATTTTTTTATAATC‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTaaa                                                                                                      <  1:3429097/128‑1 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAAACaaaa                                                                                                     >  2:707964/1‑128 (MQ=255)
                         aaaaaaTAAAATTAAAAATTATTAAAATTTA‑AATAATATTTATTTATTTTTTTATTTTTTTATATTA‑AAAAAAAAAAAAAAAAAAAACCCCATAAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTaaa                                                                                                      <  1:1316406/123‑1 (MQ=255)
                          tacataaaaaataataaTTTTAATAATATA‑CAAACTCCTGAACTTTTTTTTTATTTTTTTATATTA‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                  <  1:1076287/117‑1 (MQ=255)
                          taaaaTAAACTTAATAATTTTTATAATTTT‑TATCCTCGTTATCATTTTTTTTATTTTTTTAAAATC‑AAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                  <  1:1922006/124‑1 (MQ=255)
                           aCCAAAAACATAATAATACATATAATTTA‑CATACACGTTTTATTTTTTTTTAATTTTTTAAATAA‑ACAAAAAAAAAAAAAACAAACCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                                   <  1:3849542/128‑1 (MQ=255)
                             caaaaaaTTAATAATTATTATAATGTA‑TCACCTCTTTTAATATTTTTTTATTTGTTTAAATT‑‑AAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                                <  2:1880004/125‑1 (MQ=255)
                                  aattAATAATACTAATAATTTA‑GATTCTCTTTATAAATTTTTTTATTTTTTTATATTA‑ACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:471763/126‑1 (MQ=255)
                                  aCTTAAAAATACTTATAATGTA‑TATACTCCTGTTCTATTTTTTTATTTTTTTATCTTC‑AAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:4229219/128‑1 (MQ=255)
                                   attAAAAATTATTAAAATTTA‑TATACTAGTTATCAATTTTTTTATTTTTTTAAATAA‑AAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:5319665/127‑1 (MQ=255)
                                        taattaatAAAATTTA‑TATCCTCTTTATTTTTTTTTTTTTTTTTTTTTAATA‑AAAAAAAAAAAAAAAAAGATCCCCTTAAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                       <  1:602947/128‑1 (MQ=255)
                                        taaaTCTTATAATTTA‑TATACTCGTGATCTATTTTTTTATTTTTTTATCTTA‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                   <  1:4303522/128‑1 (MQ=255)
                                        taaaTCTTATAATGTT‑TATACTCGTTATCTTATTTTTTATTTTTTTATCTTA‑ACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                   <  1:4951351/128‑1 (MQ=255)
                                         tattattATAAATTA‑TATCCTCGGTATCTTTTTTTTTTTTTTTTTAAAATA‑ACAAAAAAAAAAAAAACAATCCCC‑TTAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                     <  1:2446205/127‑1 (MQ=255)
                                                  taatttttatcatcTTGATTTATTTTTTTATTTGTTTAATTTT‑AAAAAAAAAAAAAAAAAAAACCCCAT‑‑‑AA‑‑AAAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                                         <  2:1434618/120‑1 (MQ=255)
                                                         tataattttGATTTATTTTTTTTTTTTTTTTACTAC‑AAAAAAAAAAAAAAAAAAAAACACATT‑‑AA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                    <  1:4781232/120‑1 (MQ=255)
                                                         ataacTCGTTATATATATTTTTAATTTTTAAAATAA‑AAAAATAAAAAAAAAAAAATCCCC‑ATAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                      <  2:1795945/124‑1 (MQ=255)
                                                           tcaacttgttCTAATTTTTTATTTTTTTTTTTTA‑AAAAAAAAAAAAAAAAAAATACCCTTT‑‑AA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  1:3635568/119‑1 (MQ=255)
                                                           aaattttGATCTATTTTTTTATTTTTTTATATTA‑ACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  1:811472/122‑1 (MQ=255)
                                                             ctctttatatATTTTTTTATTTGTTTATAATA‑AAAAATAAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  1:1946531/119‑1 (MQ=255)
                                                              ctcgcttatATTTTTTTAATT‑TTTTTAATA‑AAAAAAAAAAAAAAAAAAAAACCCCTTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  2:4758260/120‑1 (MQ=255)
                                                               cttgttatATTTTTTTAATTTTTTATCTACAAAAAAAAAAAAAAAAACAATCCCC‑TTAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  1:3812429/121‑1 (MQ=255)
                                                                tttttatatttttttattttttTAAATAA‑AAAAAAAAAAAAAAAAAAATCCC‑‑ATTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  1:3738302/122‑1 (MQ=255)
                                                                ttttaaattttttttatttttttaAAATA‑AAAAAAAAAAAAAAAAAAAAACCCTTAAAAAT‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                 <  1:3190585/120‑1 (MQ=255)
                                                                tttatattttttttttttttttTAATTTA‑AAAAAAAAAAAAAAAAAAAACC‑‑‑ATAAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATACCACattt                                                             <  2:4472848/120‑1 (MQ=255)
                                                                  ttaaatattttttattttttaATATAA‑AAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                           <  1:1009549/121‑1 (MQ=255)
                                                                     atatttttttattttttTATATTA‑TAAAATTAAAAAAAAAAAAAACAATT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCATATTATACCACattttatttt                                                       <  2:4348882/127‑1 (MQ=255)
                                                                     atatttttttattttttTAT‑ATA‑AAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                        <  1:3034319/127‑1 (MQ=255)
                                                                      ttattttttATTTTTTTAAATTA‑AAAAAAAAAAAAAAAAAAAAAAC‑‑ATTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                        <  1:4094042/125‑1 (MQ=255)
                                                                       atttttttatttttttTAGATA‑AAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  2:5011827/128‑1 (MQ=255)
                                                                        ttttttttttttttTATAATA‑AAAAAAAAAAAAAAAAAAAAACCCAT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:5430633/128‑1 (MQ=255)
                                                                        tttttttatttttttaTATTA‑AAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:113506/128‑1 (MQ=255)
                                                                         ttttttttttttttATATT‑‑AAAAAAAAAAAAAAAAAAATAAACTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                   <  2:4793384/128‑1 (MQ=255)
                                                                         ttttttattttttaAAATTA‑AAAAAAAAAAAAAAAAAAATACCC‑TTAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:1862012/128‑1 (MQ=255)
                                                                         ttttttATTAGTTTATATTA‑AAAAATAAAAAAAAAAAAATACAC‑TTAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:1265012/128‑1 (MQ=255)
                                                                          ttttttttttttttTATTA‑AAAAAAAAAAAAAAAAAAATACCCTTAAAAA‑‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  2:4174502/128‑1 (MQ=255)
                                                                          ttttttttttttTATTTTA‑AAAAATAAAAAAAAAA‑AATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                                  <  1:4177424/128‑1 (MQ=255)
                                                                          tttttaatttttaaTATTA‑AAAAAAAAAAAAAAAAAAATACCC‑TAAAAA‑‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  1:5014241/128‑1 (MQ=255)
                                                                          tttttATTTTTTTTTATTC‑A‑AAAAAAAAAAAAAAAAAAACACATTAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                     <  2:5098867/128‑1 (MQ=255)
                                                                           ttttATTTTTTTAAATAA‑AAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATTTTATTTTTaaaa                                                  <  2:5394764/128‑1 (MQ=255)
                                                                            ttttttttttTATATTA‑AAAAAAAAAAAAAAAAAAAAACCATTAAAAATTAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                      <  1:2129063/128‑1 (MQ=255)
                                                                             tttttttttTATTTTT‑AAAAATAAAAAAAAAAAAATAACCTT‑‑‑AA‑‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  2:2685580/125‑1 (MQ=255)
                                                                               aTTTTTTTATATTC‑AAAAATAAAAAAAAAAAAATCCCCTTT‑‑AA‑‑AAAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:5156458/128‑1 (MQ=255)
                                                                                 ttttttATATTA‑AAAAATAAAAAAAAAAAAAAACCCTTTAAAA‑‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:1221630/125‑1 (MQ=255)
                                                                                    tttATCTTC‑ACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAAAAAAAAAAAAAA‑‑‑AAAAACAAAAAAAATTTATAAAAAATCCCTATTAAACAAAATTTTATTTTTAAAATaaaaaatataa                                      >  2:3137384/1‑119 (MQ=255)
                                                                                      ttaaaattaaaaaaaaaaaaaaaaaaATAACATTAAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                           <  1:2761770/118‑1 (MQ=255)
                                                                                        ttatttaaaaaTAAAAAAAAAAAAATAACATT‑‑‑AA‑‑AAAT‑T‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:4250496/120‑1 (MQ=255)
                                                                                        taatataaaaaTAAAAAAAAAAAAATACCC‑‑AAAAA‑‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                       <  2:4010623/120‑1 (MQ=255)
                                                                                         aaaaaaaaaaaaaaaaaaaaaaaATCCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  2:5177988/121‑1 (MQ=255)
                                                                                             caaaaaaaaaaaaaaaaaaATACCC‑‑ATAAA‑‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                  <  2:619309/125‑1 (MQ=255)
                                                                                             aaaaaaaaaaaaaaaaaaaATCCCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                  <  2:453852/125‑1 (MQ=255)
                                                                                               acaaTAAAAAAAAAAAAATCCAC‑‑TTAAA‑‑AATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                                <  2:4850009/126‑1 (MQ=255)
                                                                                                  aaaaaaaaaaaaaaaaACCC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                             <  1:4521882/126‑1 (MQ=255)
                                                                                                  aaaaaaaaaaaaaaATAACC‑‑TTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                             <  1:1647796/126‑1 (MQ=255)
                                                                                                    aaaaaaaaaaaaaaACCCATTAAAA‑‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                             <  1:4550311/128‑1 (MQ=255)
                                                                                                         aaaaaCAATCACCTT‑‑‑AA‑‑AAAT‑T‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatat                    <  1:1710258/128‑1 (MQ=255)
                                                                                                                aaaaaccattaaa‑‑aattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATTAGatatat                  <  1:5228606/120‑1 (MQ=255)
                                                                                                                 taccaataaaaa‑‑ataa‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  2:2171270/119‑1 (MQ=255)
                                                                                                                 aataaaattaaa‑‑aattaaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatata                 <  1:65090/121‑1 (MQ=255)
                                                                                                                  aacaaatataa‑‑aaat‑‑aaaaaaAAAAAAAAAATAAACTAAAAACAAAATCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  1:2371873/119‑1 (MQ=255)
                                                                                                                   tacaataaaa‑‑aatt‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa              <  2:4406882/121‑1 (MQ=255)
                                                                                                                     tcattAAA‑‑AAAT‑‑ATAAAAAAATAAAAAATAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:2551194/125‑1 (MQ=255)
                                                                                                                     taattAAA‑‑AATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataata            <  1:2113354/125‑1 (MQ=255)
                                                                                                                      ccataaa‑‑aatt‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:4933054/125‑1 (MQ=255)
                                                                                                                      atataaa‑‑aaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  2:2055385/125‑1 (MQ=255)
                                                                                                                      acattaa‑‑atat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:91082/123‑1 (MQ=255)
                                                                                                                      aatttaa‑‑aaat‑aaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:183781/123‑1 (MQ=255)
                                                                                                                        ctaaa‑‑aaaa‑taaaaaaaAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta         <  2:4701946/127‑1 (MQ=255)
                                                                                                                         taaa‑‑aattaaaaaaAAAAAAAAAAAAAAAAATAAAAAAAAACTATTTTTATTAAAATTAAATATTAAACAAAATTTAATTTTTAAAAAAATATATTGAAATAATTTATATTTAAATTATttaatatat         >  1:1771527/1‑125 (MQ=255)
                                                                                                                           aa‑‑aatt‑aaaaatAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTatat      <  2:3621226/128‑1 (MQ=255)
                                                                                                                           aa‑‑aaat‑taaaaaAAAAAAAAAAAAAAAAAAAAAACAAACTAAATTTATTAAAATAACAAATAATAAAACATTTTAATTTTAAAAAAATATATTTACATAATATAAATAAAAAATATATAATAatatat      >  1:4885270/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                                
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTA‑GATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202369‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑