Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2510T.54.9% inf / inf 1126intergenic (+215/‑327)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (239/207);  new base . (428/116);  total (683/443)
Fisher's exact test for biased strand distribution p-value = 5.43e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1379 total aligned reads displayed.

TAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165124‑165378
                                                                                                                                |                                                                                                                               
taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtt                                                                                                                                 >  2:1527808/1‑128 (MQ=255)
  atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttt                                                                                                                               >  1:2176066/1‑128 (MQ=255)
   tatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttt                                                                                                                              >  2:3541161/1‑128 (MQ=255)
     tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAttttttt                                                                                                                            >  2:1471212/1‑128 (MQ=255)
        tttttCATTAATTTATCGCTCTTTTATTAATTATTAATAAAATAAAAATATTATCTTTTTAGATATTTTTTGTTAATGCAA‑ATTTTTTAAAAATTATTTTGTACTTGTAAAAAATAGGtttttttttt                                                                                                                         <  2:189292/126‑1 (MQ=255)
         gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                        >  1:1216960/1‑128 (MQ=255)
           ttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCttttttttttttt                                                                                                                      >  2:1186809/1‑128 (MQ=255)
            tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAGCTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                     >  2:372310/1‑128 (MQ=255)
            tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCTA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                     >  1:682744/1‑128 (MQ=255)
            tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTATAAAATAGCtttttttttttttt                                                                                                                     >  1:309603/1‑128 (MQ=255)
              aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTTTAAAAAATAGCttttttattttttttt                                                                                                                   >  1:1826004/1‑128 (MQ=255)
              aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAttattttttttttttt                                                                                                                   >  1:2640687/1‑128 (MQ=255)
               ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCtttttttttttttttta                                                                                                                  >  2:1961993/1‑127 (MQ=255)
                tAATTTATCGCACTTGTATGAATTATTAATAAAATAAAAATATTATATTTTTATATATTTTTTTTATATTCAA‑ATTTTTAAAAAATTAATTTTAAATTGTAAAAAATATCttttttttttttttttat                                                                                                                 <  2:161590/128‑3 (MQ=255)
                   tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCtttttttttttttttttaaaa                                                                                                              >  2:3137109/1‑124 (MQ=255)
                      ttattaattGTATTTATTATTTATAAACTAAAAATATTATATTTTTTTATATTTTTTTTATATGCAA‑ATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataatgg                                                                                                           <  1:408567/121‑5 (MQ=255)
                      aTCGCACTTGTTTGAATTAGTAAGAAACTAAAACTATTATCTTTTTATATATTTTTTGTAAATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataatgga                                                                                                           <  1:3604949/128‑9 (MQ=255)
                      aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataaatg                                                                                                           >  1:468427/1‑124 (MQ=255)
                             ttGTATGAATTAGTAGGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAAAtata                                                                                                  >  1:3722412/1‑128 (MQ=255)
                                ttttaaTTATTAAGAAAAAAAAAATATTATCTTTTTATATAATTTTTTTATATGCAA‑ATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAAt                                                                                               <  2:3055160/124‑1 (MQ=255)
                                 aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTTAAATATAAAtt                                                                                              >  2:937588/1‑128 (MQ=255)
                                   taaTTATTAATAAAATAAAACTATTATATTTTTAGATATTTTTTGTATTTTCAA‑ATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAAtttt                                                                                            <  1:3235369/127‑1 (MQ=255)
                                   gAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAAAATGTAAATATAAAttt                                                                                             >  1:2694665/1‑128 (MQ=255)
                                       tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTattt                                                                                        >  2:2062262/1‑125 (MQ=255)
                                         gTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑T‑ATTGAAATATAAATTTTTGTTAt                                                                                      >  2:1085818/1‑128 (MQ=255)
                                           gaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAG‑‑ATTTTTTTTTTTTTTTTTATAATTTAAATTTAAATTTTatttattt                                                                                    >  2:3636885/2‑128 (MQ=255)
                                           aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATATT‑‑AAATATAAAtttttatttattt                                                                                   >  2:2802730/1‑119 (MQ=255)
                                              aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATtttttt                                                                                >  2:2864805/1‑128 (MQ=255)
                                                actaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATTAAAATTTTattattttttttg                                                                               >  1:1995204/1‑116 (MQ=255)
                                                 ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTGGTATtttttttt                                                                              >  2:3192550/1‑126 (MQ=255)
                                                  taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTATA‑AAT‑TAAATATAAATTTTAGTTATTttgtttta                                                                             >  2:131718/1‑125 (MQ=255)
                                                   taaaataTTAATTTTTTACTTTTTTTTTGTTTATTCAATATTTTAAAA‑AAAAAAATTCAAATTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                           <  1:1145545/127‑1 (MQ=255)
                                                   aaaactaTTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAA‑AAAAAATTTAAGTATtttttttttat                                                                           >  1:3797339/1‑123 (MQ=255)
                                                     aattattattatTTTTTATTTTTTTTTTATATTCAA‑ATTTTTAAAAAAATAAATTTAACATTTTAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                          <  1:3440122/125‑1 (MQ=255)
                                                      actaTTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATTTATttttttttaaaat                                                                         >  1:1751412/1‑121 (MQ=255)
                                                      aatattttttttttttatttttttttttTTTTCAA‑ATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                         <  2:2608134/126‑1 (MQ=255)
                                                      aatattatTTTTTTATTTATTTTTTTTATATTAAA‑ATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                         <  1:812554/126‑1 (MQ=255)
                                                       ctaTTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATATTGTAAATATAAATTTTAGTTTTTTTTTTGTATaatat                                                                       >  2:3880421/1‑125 (MQ=255)
                                                        tattatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAAAAT‑AAAATTAAAATTTTAAGTATtttttttttaatat                                                                        >  2:460371/1‑120 (MQ=255)
                                                        tattatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTA‑AATGAAAATAAATTTTTTATTTATttttttttaaaatt                                                                        >  2:2130982/1‑120 (MQ=255)
                                                        tattatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTGTTTTCTAATTAt                                                                      >  1:1391883/1‑128 (MQ=255)
                                                        tattatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTATTAAAATGGAATTATAAATTTTAGTTATTTTTTTTAATAAGTAt                                                                      >  1:532851/1‑128 (MQ=255)
                                                          ttatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTGTATAATTAta                                                                     >  1:2796225/1‑127 (MQ=255)
                                                          ttatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTTTTTTATAATTAtat                                                                    >  1:1433037/1‑126 (MQ=255)
                                                          ttatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAAATGTAAATATAAATTTTAGTTATTTTGTTGTATATTTATCt                                                                    >  2:3935287/1‑128 (MQ=255)
                                                           tatCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGttttaa                                                                   >  1:1283993/1‑123 (MQ=255)
                                                               tttttAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTGTCTAAGTATATaaaaaa                                                              >  2:3473156/1‑128 (MQ=255)
                                                                 ttttatttatttttGTATATGCAA‑ATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                             <  2:3795528/119‑1 (MQ=255)
                                                                 tttAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTTTTTTATAAGTTAATAAAAAAAt                                                            >  1:3384515/1‑128 (MQ=255)
                                                                  tttgATATTTTTTTTTTATTTAA‑ATTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                             <  1:1044887/125‑1 (MQ=255)
                                                                  ttAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTAAT‑ATTGAAATTAAAATTTTATAT‑TTTTTTTGTATAA‑TATATaaaaaaaaa                                                           >  2:1823679/1‑126 (MQ=255)
                                                                  ttAGATATTTTTTGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTTTTTTGTTGTATAAGTATCTaaaaaaa                                                             >  2:609198/1‑128 (MQ=255)
                                                                    atatatTTTTTGTATATGAAA‑ATTTTTAAAAAATTAATTTGTAATTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  2:3252822/126‑1 (MQ=255)
                                                                    agttatTTTTTTTATTTGTAA‑ATTTTTAATAATTTAATTTGAATATGTTAAAAATA‑‑‑TGTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  1:244935/125‑1 (MQ=255)
                                                                      atatTTTTTGTATATGTAA‑ATTTTTAAAATATTAATTTGAATTTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                         <  1:1893910/128‑1 (MQ=255)
                                                                       ttttttttttttATTCTA‑TTTTTTTAATAATTAATTTTTATTTTTTAAAAATTG‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                         <  1:3659761/126‑1 (MQ=255)
                                                                       gtatttagatataTTCAA‑ATTTTTAAAAAATTAATTTTTAATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaa                                                        <  1:3850715/119‑1 (MQ=255)
                                                                       atttttttttATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTTTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  1:872348/126‑1 (MQ=255)
                                                                          tttttGTTTATTCAA‑ATTTTTAAAAAATTAATTTTAACTTTTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAg                                                      <  1:2051440/128‑1 (MQ=255)
                                                                           ttttttttattaaa‑aTTTTTTAAAAATTAATTTTAAATTTTATAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                    <  1:1009766/116‑1 (MQ=255)
                                                                           ttttGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATTTTGTTGTATAATTATCTAAAAAAATATAAAGTaa                                                   >  2:2222182/1‑128 (MQ=255)
                                                                            ttttattataaaa‑aTTTTAAAA‑AATTAATTTTAAATTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:3985687/117‑1 (MQ=255)
                                                                             ttGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAT‑‑TGTAATTAAAATTTTTAGTTTTTTTTTTTAATAATTTTATAAAAAAATA‑AAAGTaaaa                                                 >  1:3311861/1‑128 (MQ=255)
                                                                             ttGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATTTAAATATAAATTTTATTTATTTTTTTTTATAATTTAAAAAAAAAATAaaaataaa                                                   >  1:2389828/1‑124 (MQ=255)
                                                                             ttGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTT‑TAATGTAAAAATAAATTTTATTTATTTTTTTTTATAATTATATAaaaaaaaaaaaaataa                                                   >  2:1253457/1‑124 (MQ=255)
                                                                              tGTATATTTAA‑TTTTTTAAAAAATTAATTTTAAATTTTATAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                 <  1:3915845/128‑1 (MQ=255)
                                                                              tGTATATGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTGTTTTATAATTTTATAAAAAAATATAAATTaaaaa                                                >  1:1517476/1‑128 (MQ=255)
                                                                                 attttaaa‑aTTTTTAAAAAAATAATTTTTAATTTTTAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                              <  1:1349855/122‑1 (MQ=255)
                                                                                 atatGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTATGTATTTTTTTTTATAAGTATATAAAAAAATAAAAAGTAAAAAat                                              >  2:3343672/1‑128 (MQ=255)
                                                                                   tttttataTTTTTTAAAAATTAAATTTAAATTTTAAAAAATA‑TGTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                              <  2:705470/121‑1 (MQ=255)
                                                                                   atGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAAAATAAATTTTATGTTTTTTGTTGTAAAATTATATAAAAAAAAAAAATGAAAAAAatat                                            >  2:787633/1‑128 (MQ=255)
                                                                                   atGCAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTTGTATTTTTTTGTCTAATTATCTAAAAAAATATAAAGTAAAAAATAtt                                           >  2:3404863/1‑128 (MQ=255)
                                                                                      cAA‑ATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGTTATTTTGTTGTATAATTATATAAAAAAATATAAAGTAAAAAATAtttt                                         >  1:3201769/1‑126 (MQ=255)
                                                                                          aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTTTATAAGTATAAAAAAAAATATAATATAAAAAATATTGTTaaa                                     >  1:2868594/1‑128 (MQ=255)
                                                                                           ttttTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTaaa                                     <  2:239317/128‑1 (MQ=255)
                                                                                           ttttTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTA‑AATGGAAAAATAATTATTATTTATTTTTTTTTATAATTATATAAAAAAATAGAAATGAAAAAATATTTTTata                                     >  1:636163/1‑126 (MQ=255)
                                                                                              ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATTATGGAAATATTAATTTTAGGTATTTTTTTTTATAATTATAAAAAAAAATATAAAAGAAAAAATATTTTTAAAAATa                                 >  1:2256513/3‑128 (MQ=255)
                                                                                               taaaaaaTTTATTTGAATTTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTaa                                <  1:2311359/127‑1 (MQ=255)
                                                                                               taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTATTTATTTTTTTGTATAATATTAAAAAAAAATATAAAGTAAAAAATATT‑TTaaaattta                                >  2:539010/2‑124 (MQ=255)
                                                                                                 aaaaattaattTTTAATTGTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAAt                               <  2:1017201/125‑1 (MQ=255)
                                                                                                 aaaaattaattTTAACTTGTAAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                             <  1:296919/125‑1 (MQ=255)
                                                                                                  aaaattaattTTTAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                              <  1:2121555/126‑1 (MQ=255)
                                                                                                  aaaattaattTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATATTTGAAAAATAAATTTTATTTTTTTTTTTTTCTAATTTTATAAAAAATTATAAAATAAAAAATATTTTTAAAATTataaata                           >  1:1652359/3‑122 (MQ=255)
                                                                                                  aaaattaattTGAAATTTTAAAAAA‑‑‑‑‑TTTCTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTa                           <  2:2719988/126‑1 (MQ=255)
                                                                                                   aaattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAATTTTTAGGTATTTTGTTGTGTATTTTTATAAAAAAATTAAAAGTAAAAAATATTGTTAAATTTAATa                              >  1:3475049/2‑128 (MQ=255)
                                                                                                    aattatttTTTAATTTTAAAAAATAG‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                             <  2:855572/128‑1 (MQ=255)
                                                                                                     attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGGAATTATAAATTTTTGTTTTTTTTTTTTATAAGTATATAAAAAAATATAAAGTAAAAAAATTTGTTAAAATTAataata                           >  1:3539336/1‑128 (MQ=255)
                                                                                                      ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTAATTTTTTTTTCAAATTATCTAAAAAAATAAAAAGAAAAAAATATTTTTAAAAGTAAAAATaaa                         >  2:1409624/1‑128 (MQ=255)
                                                                                                        aattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTTTTTTTTTTTATAATTATAAAAAAAAAAAAAAAGGAAAAAATATTTTTAAAATTAATAATaaaa                        >  2:4032632/1‑128 (MQ=255)
                                                                                                         attTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTAATAATTTAAATATTAATTTTATGAATTTTTTTGTATAAGTAAAAAAAAAAAAATAAAAAAAAAAATATTTTAAAAAATAAAAAAAAAat                       >  2:2501020/1‑128 (MQ=255)
                                                                                                         aattttaattttAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTATTTTGTTGTCTAATTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAat                       <  1:937588/117‑1 (MQ=255)
                                                                                                           ttGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTGTCTAATTTTATAAAAAAATAGAAAGTAAAAAAATTTGTTAAAATTAAAAATAAAtttt                     >  1:3047089/1‑127 (MQ=255)
                                                                                                               aCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAATTGTAAATAAAAATTTAAGTTATTTTGTTGTCTAATTATAATAAAAAATAAAAAGGAAAAAATTTTGTTAAATTTAATAATAAAATAATTTa                 >  1:2570674/1‑128 (MQ=255)
                                                                                                                taattttaaaaTATTTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                  <  1:597234/121‑1 (MQ=255)
                                                                                                                 ttGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTA‑AATGAAAATAAAAAATTTAGTTATTTTTTTTTAAAATAAAATAAAAAAAAAAAAATAAAAAAATATTTTTAaaaaaaataaaaaaataaataaa                >  2:2955577/1‑121 (MQ=255)
                                                                                                                 ttGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTGTAAAATTATAAAAAAAAATAAAAAGTAAAAAATAATTTTAAAAGTAATAATAAAATTATTTaa                >  1:3147764/1‑128 (MQ=255)
                                                                                                                       tattattttttttttttttttttttttATAATTTATATATTAATTTTATGTATTTTGTTGTCTTAGTATCTAAAATAATAGAAAGGATAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGtta           <  1:1585377/120‑1 (MQ=255)
                                                                                                                          aattttttttttttttttttttttATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatt        <  2:2308588/123‑1 (MQ=255)
                                                                                                                           attttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGttaatta       <  2:1736081/124‑1 (MQ=255)
                                                                                                                               cttttttttttttttttttAAAATGGAAATATAAATTTTAGGTATTTTTTTGTCTAAGTATATAAAAAAATAGAAAGTAAAAAATATTTTTAAAAGTAATACTAAAATTATTTAATTTTAATTAAAAc   >  1:741813/2‑128 (MQ=255)
                                                                                                                                |                                                                                                                               
TAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAA‑ATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAACT  >  CP016816/165124‑165378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑