BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,485	0	T	.	73.3%	347.1 / inf	289	intergenic (+263/‑412)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (20/48); new base . (84/103); total (117/172)
Fisher's exact test for biased strand distribution p-value = 3.06e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01

Only 100 of 315 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATA  >  CP016816/202358‑202602

aaGTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCCCt                                                                                                                        <  1:2967280/128‑1 (MQ=255)

 aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCACCtt                                                                                                                       >  1:3116950/1‑128 (MQ=255)

  tttATTGTAAATAATATATTTAATGTTAATTAAAATACCATAAACTTAAAAATTATTATAATGTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCCCtta                                                                                                                      <  2:2344479/127‑2 (MQ=255)

   ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCCCttaa                                                                                                                     >  2:3307103/1‑126 (MQ=255)

      gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAAAAAACCCCttaaaaa                                                                                                                  >  2:3525027/1‑123 (MQ=255)

      gtgtAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAA‑AAAAAAAAATAACCttaaaaa                                                                                                                  >  2:1477802/1‑123 (MQ=255)

          aaaTAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAAACCCC‑‑Ttaaa‑aaataa                                                                                                           >  1:3400059/1‑128 (MQ=255)

           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCCCtaaaaaattaaa                                                                                                             >  2:2995693/1‑117 (MQ=255)

            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAA‑AAAAAAAAATACC‑‑aataaa‑aaataaaa                                                                                                         >  1:3163539/1‑128 (MQ=255)

             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCAC‑‑Attaaa‑aattaaaaa                                                                                                        >  1:3317224/1‑128 (MQ=255)

             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAAACCACtt‑‑‑aa‑aaataaaaaa                                                                                                       >  2:3632105/1‑128 (MQ=255)

             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAA‑AAAAAACAATCCCC‑‑Ataaa‑aattaaaaaa                                                                                                       >  2:3451362/1‑128 (MQ=255)

              aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCAAC‑‑Ttaaa‑aattaaaaaa                                                                                                       >  2:3915634/1‑128 (MQ=255)

              aataGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCATATAATTTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCAC‑‑‑TAAA‑AAATtaaaaaa                                                                                                      >  2:1227820/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaa                                                                                                     >  2:3830344/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTAATCTTCACAAAT‑AAAA‑AAAAAACATACCCC‑‑TTAAA‑AATTaaaaaaaa                                                                                                     >  2:2108062/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATATAATATAAAATTAAAATAACAAAA‑AAAA‑AAAAAAAAAACAAC‑‑ATAAA‑AAATaaaaaaaa                                                                                                     >  2:2745358/1‑128 (MQ=255)

                 agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATATGTTTAACTTAACAAAT‑AAAA‑AAAAAAAAATCC‑‑‑AAAAAA‑AAATaaaaaaaaaa                                                                                                   >  1:3138227/1‑128 (MQ=255)

                   agTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaa                                                                                                  >  2:2283558/1‑128 (MQ=255)

                    gtaaaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAAAAATCCCC‑‑‑TAAA‑AAATaaaaaaaaaaaaa                                                                                                >  2:380703/4‑128 (MQ=255)

                     ttaattttaattaaAAAACAATAAACTAAATAATTAATATAAATTAACTCCTACTTATATATTTTTTTATTTGTTTAAATTCAAAAAA‑AAAA‑AAAAAAAAAACCCC‑‑TTAAA‑AAATaaaaaaaaaaaaa                                                                                                <  1:2173541/122‑1 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCCAATaaaaa‑aaaaaaaaaaaaaaa                                                                                                  >  2:320945/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAA‑AAAAAAAAAACACCTaaaaaa‑aaaaaaaaaaaaaaaa                                                                                                 >  2:2612683/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAA‑AAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                              >  2:3690617/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAA‑AAAAAACAA‑‑AAAAAATAAA‑AAATaaaaaaaaaaaaaa                                                                                               >  2:1396057/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCGTGATCTATTTATATATTTATTTATATTAACAAAT‑AAAA‑AAAAAAAAAT‑‑AAAATTAAA‑AATTaaaaaaaaaaaaaaa                                                                                              >  2:5655/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCATAACAAAT‑AAAA‑AAAAAACAA‑‑‑ACAAAAAAA‑AAATaaaaaaaaaaaaaaaa                                                                                             >  2:2499439/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCACCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaaa                                                                                             >  2:3965543/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                              >  2:3145997/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAAT‑AAAA‑AAAAAAAAAACCC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaa                                                                                             >  2:857957/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAA‑AAAA‑AAAAAAAAAAAAC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaa                                                                                             >  2:2701093/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTAAATCTTAACAAAA‑AAAA‑AAAAAACAAACCAC‑‑TAAAA‑AAATaaaaaaaaaaaaaaa                                                                                              >  1:3094170/1‑128 (MQ=255)

                        attttaattaaAAAAAAATAAAATTAAAAATTTTTATAATTTTTATCCTCGTTTTATATTTTTTTTTTTTTTTTTATTAAAAAAA‑AAAA‑AAAAAAAAATACCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                             <  2:3364419/125‑1 (MQ=255)

                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                             >  1:3481191/1‑128 (MQ=255)

                        aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAA‑AAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                            >  1:3041044/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCATCACAAAT‑AAAA‑AAAAAAAAAACACCTAaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                              >  2:2041705/1‑128 (MQ=255)

                          tttaattaaAATAAAATAAATTTAATAATTATTAAAAATTATTACAAAGTTATCTATTTTTTTATTTTTTTAAATTAAAAAAT‑AAAA‑AAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                           <  1:159141/127‑1 (MQ=255)

                          tttaattaaAATAAAAAAAAATTAATAATTATTAAAATTTATAAAATCTTTATATATTTTTTTTTTTTTTTATATTCAAAAAA‑AAAA‑AAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaa                                                                                           <  1:3671455/127‑1 (MQ=255)

                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTATATATTTGTTTATCTTCACAAATAAAAA‑AAAAAACAATCCC‑‑‑ATAAA‑AAATaaaaaaaaaaaaaaaaaa                                                                                           >  1:3577102/1‑128 (MQ=255)

                          gTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGAAGATCCTCGTGAACTAATATATAAATTAATAAACAACACAAAT‑AAAA‑AAAAAAAAAAAACATT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaa                                                                                          >  1:1920593/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAA‑AAAAAAAAATCACCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:799074/1‑128 (MQ=255)

                             aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTATTTGATTATCTACACAAAT‑AAAA‑AAAAAAAAATACC‑‑AAAAAA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:2033543/1‑128 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:3896157/1‑127 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAA‑AAAAAACAAAACCC‑‑ATAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:3273736/1‑126 (MQ=255)

                                taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAAAAATACCC‑‑TAAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:3241315/1‑125 (MQ=255)

                                 aaaaTAAAAAAAAATTAAAAATTTTTATAATTTATATACACGTTATATATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAA‑AAAAAAAAAACCCC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaaaaactaaaa                                                                                    <  1:3463352/128‑7 (MQ=255)

                                  aaaTACCATAAACTTAATAATTCTTATAATGTCGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAAACCCCTTAAAAA‑Taaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  2:3747175/1‑125 (MQ=255)

                                   aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAAAACAC‑‑TAAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaac                                                                                  >  2:3541626/1‑122 (MQ=255)

                                    aTACCATAAAATTAAAAATTCTTTTAAATTTCTTCCTCGTTTTCTATTTTTTTATTTTTTTTTATTAAAAAAA‑AAAA‑AAAAAAAAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                  <  2:3055489/128‑1 (MQ=255)

                                     taaaaTAAAATTAATAATTATTAAAATTTATAAAAACGTTTTATTTTTTTTTTTTTTTTTATAATAACAAAA‑AAAA‑AAAAAAAAAAACCC‑‑TTAAA‑AATTTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                <  1:957416/124‑1 (MQ=255)

                                       ccAAAAACTTTATTATTATAATAAATTATATACTCTTACTCTAATTTTTTTTTTTTTTATAAAAAAAAAA‑AAAA‑AAAAAACAAT‑CCCATTTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                               <  1:2273966/128‑1 (MQ=255)

                                         aTAAACATAAAAATACATAAAATTTACACCCCCCTGATCAATTTTTTTATTTGTTTATCTTCACAAAA‑AAAA‑AAAAAACAATCCCCTTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                              <  1:1568215/128‑1 (MQ=255)

                                           taatatataaatTATTATAATTTATATTCTGTTTATATTTATTTTTTTTTTTTTATAATCACAAAA‑AAAA‑AAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                        <  2:952887/119‑1 (MQ=255)

                                           aaaaataataaTTCTTATAATGTATATACTCGTTATATATTTTTTTATTTTTTTATCTTCACAAAA‑AAAA‑AAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                         <  1:3596006/123‑1 (MQ=255)

                                           aaaaTTAATAATTATAATAATTTTTATACTCTTGTTTTATTTTTTTATTTTTTTAATATAAAAAAT‑AAAA‑AAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                          <  1:3379997/128‑1 (MQ=255)

                                            aaattAAAAATTATTTTAATTTTTAACCTCGTTTTATTTTTTTTTATTTTTTTATTATAAAAAAT‑AAAA‑AAAAAAAAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                          <  2:2197073/125‑1 (MQ=255)

                                            aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAACAAAAAAAaaccaatatta                                                                         >  2:412318/1‑123 (MQ=255)

                                                 aataatTTTTATAATTTATATATTTTTTTTTTATTTTTTTATTTTTTTATATTTAAAAAA‑AAAA‑AAAAAAAAAATCCCTTT‑‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                    <  2:488783/128‑1 (MQ=255)

                                                  aaaatTTTTATAATTTATATAATCTTTTTATATTTTTTTATTTTTTTAATATAAAAAAA‑AAAA‑AAAAAAAAAACCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                   <  2:3266767/126‑1 (MQ=255)

                                                    aatTTTTATAATTTTAATACTTGTTATATATTTTTTTTATTTTTTAAATTAAAAAAA‑AAAA‑AAAAAAAAATCCCC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                <  1:404717/128‑1 (MQ=255)

                                                      ttaatataATTTATATACAAGTTATATATTTTTTTATTTTTTTAAATTAAAAAAA‑AAAA‑AAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                               <  1:3634091/124‑1 (MQ=255)

                                                       taatataATGTATATACTCGTTATCTATTTTTTTATTTGTTTATATTAAAAAAA‑AAAA‑AAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                             <  1:2008620/125‑1 (MQ=255)

                                                                  atatactggttttCTTTTTTTTTTTTTTTTATTCTTAACAATT‑AAAA‑AAAAATCTTTCCGC‑‑TTAAA‑AATTAAAAAAAAAAATAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                   <  1:2330864/116‑1 (MQ=255)

                                                                     taatagttatatatttttttattttttTATATAAAAAAAA‑AAAA‑AAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                <  1:320945/117‑1 (MQ=255)

                                                                      tcttttttttttttttttttttttttTATATTAAAAAAA‑AAAA‑AAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                               <  2:3864658/116‑1 (MQ=255)

                                                                       tattttttttttttttttATTTTTTAATATT‑AAAAAT‑AAAA‑AAAAAAAAATACCC‑TTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                              <  2:4008534/117‑1 (MQ=255)

                                                                       atagttattatttttttttttttttTAAATTAAAAAAA‑AAAA‑AAAAAAAAATCCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                               <  1:3776981/117‑1 (MQ=255)

                                                                        tatttttatatttttttattttttTAATATAAAAAAA‑AAAA‑AAAAAAAAATCCCCATAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                               <  1:3868555/120‑1 (MQ=255)

                                                                         atgtttatATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAA‑AAAAAACAAAACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                             <  1:1699292/121‑1 (MQ=255)

                                                                         agttttattttttttttttttttAAAATTAAAAAAA‑AAAA‑AAAAAAAAAACCCC‑‑TTAAA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                           <  2:310200/119‑1 (MQ=255)

                                                                           ttatttttttttttatttttttaTAAT‑AAAAAT‑ATAA‑AAAAAAAAAAATTCATTT‑AA‑AATTAAAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                          <  2:1921120/121‑1 (MQ=255)

                                                                           ttatatatttttttattttttTATAATAAAAAAA‑AAAA‑AAAAAAAAAAACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                         <  1:3960216/123‑1 (MQ=255)

                                                                           ttataaaattttttttttttttATTTTAAAAAAA‑AAAA‑AAAAAACAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                         <  1:850859/120‑1 (MQ=255)

                                                                            ttattatatttttatattttTATTTTAAAAAAA‑AAAA‑AAAAAAAAATAACC‑AATAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                          <  1:2816294/124‑1 (MQ=255)

                                                                             atatatttttttattttttTTAATTAAAAAAA‑AAAA‑AAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                        <  1:3528406/125‑1 (MQ=255)

                                                                                tATTTTTATATTTTTTTTTATAAAAAAAA‑AAAA‑AAAAAAAAAACCC‑‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:2702999/128‑1 (MQ=255)

                                                                                  attttttaattttttaaAATCAAAAAA‑AAAA‑AAAAAAAAATACAC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:1177988/127‑1 (MQ=255)

                                                                                    ttttttttTGTTTATATTCAAAAAA‑AAAA‑AAAAAAAAATAACC‑TTTAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                  <  1:2641752/128‑1 (MQ=255)

                                                                                    tttttattt‑tttatATTAAAAAAA‑AAAA‑AAAAAAAAAACCCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                <  2:3481191/128‑1 (MQ=255)

                                                                                    tttttATTTTTTTATATTAAAAAAA‑AAAA‑AAAAAAAAATTCCCTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:1058733/128‑1 (MQ=255)

                                                                                     ttttttttttttttttTAAAAAAT‑TAAA‑AAAAAAAAATTCCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                 <  1:5655/128‑1 (MQ=255)

                                                                                     ttttATTTTTTTATTAACAAAAAT‑AAAA‑AAAAAACAATCCC‑‑ATAAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                <  2:1292498/128‑1 (MQ=255)

                                                                                      tttATTTTTTTTTATTAAAAAAA‑AAAA‑AAAAAAAAATACCC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                <  2:3464418/128‑1 (MQ=255)

                                                                                       tttattGTTTATATT‑ACAAAA‑AAAATAAAAAAAAATCCCC‑‑TTAAA‑AAATATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                              <  1:2053931/124‑1 (MQ=255)

                                                                                       ttATTTTTTTATATTAAAAAAA‑AAAA‑AAAAAAAAATCACATT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                             <  1:2366462/128‑1 (MQ=255)

                                                                                         aattttttATATTAAAAAAA‑AAAA‑AAAAAAAAAAACCC‑ATAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                             <  1:787850/123‑1 (MQ=255)

                                                                                           ttttttATATTAAAAAAT‑AAAA‑AAAAAAAAAAACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                          <  1:2199216/125‑1 (MQ=255)

                                                                                             ttttATATTTAAAAAA‑AAAA‑AAAAATAAATACCC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                        <  2:3070025/127‑1 (MQ=255)

                                                                                               tttaatttaaaaaa‑aaaa‑aaaaaaaaATACCAA‑‑TAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                      <  1:3909282/118‑1 (MQ=255)

                                                                                               ttATATTAAAAAAT‑AAAA‑AAAAAAAAATACCCTTAAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                        <  1:634973/128‑1 (MQ=255)

                                                                                                 attaaaaaaaaa‑aaaa‑aaaaaaaaATACACTTAAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                      <  1:2606957/120‑1 (MQ=255)

                                                                                                 atattaaaaaaT‑AAAA‑AAAAAAAAAT‑TACATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                     <  1:1420625/120‑1 (MQ=255)

                                                                                                 aTCTTCACAAAT‑AAAA‑AAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATATATTTATTAAAATTCAATATTATACCAAATTTTATTTTTAAAATAATATATTGaa                   >  1:463013/1‑127 (MQ=255)

                                                                                                   ttttaaaaaT‑AAAA‑AAAAAAAAAATACCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                 <  2:1033496/122‑1 (MQ=255)

                                                                                                   attaaaaaaa‑aaaa‑aaaaaaaaaaACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                  <  1:1339680/122‑1 (MQ=255)

                                                                                                     attaaaaa‑aaaa‑aaaaaaaaaaaaCCCATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                  <  1:2528471/124‑1 (MQ=255)

                                                                                                            t‑AAAA‑AAAAAAAAATCACAA‑‑TAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata         <  1:1811652/128‑1 (MQ=255)

                                                                                                              aaaa‑aaaaaaaaAT‑ACCTTTT‑‑A‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc       <  1:1026002/128‑1 (MQ=255)

                                                                                                                aa‑aaaaaaaaATACCC‑TTTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc       <  1:1383230/128‑1 (MQ=255)

                                                                                                                     aaaaCAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAGACAATTTAATAAAATTACAAATTATACACCATTTTATTTTTAAAATAAGATAATTACATAatatattatttatt  >  1:1490791/1‑120 (MQ=255)

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAA‑AAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATA  >  CP016816/202358‑202602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`