Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,927,5010TG44.6% 92.3 / 14.1 56G398G (GGT→GGGygdHUPF0717 family protein
Reads supporting (aligned to +/- strand):  ref base T (4/27);  new base G (25/0);  total (29/27)
Fisher's exact test for biased strand distribution p-value = 4.32e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGTCAATGCGCATTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCT  >  NC_000913/2927359‑2927651
                                                                                                                                              |                                                                                                                                                         
ggTCAATGCGCATTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTaaa                                                                                                                                                   <  2:908358/151‑1 (MQ=255)
ggTCAATGCGCATTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTaa                                                                                                                                                    <  2:279992/150‑1 (MQ=255)
 gTCAATGCGCATTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTaaaa                                                                                                                                                  <  2:389624/151‑1 (MQ=255)
       gcgcATTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTc                                                                                                                                            <  2:373093/151‑1 (MQ=255)
         gcATTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGAAGTAAAAAAAGACgg                                                                                                                                          >  2:468873/1‑151 (MQ=255)
           aTTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGACGGAaaaaaaaacgg                                                                                                                                          >  2:288229/1‑144 (MQ=255)
             tGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGAAaaaaagaagg                                                                                                                                          >  2:742218/1‑143 (MQ=255)
                   aGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGcc                                                                                                                                <  2:953232/151‑1 (MQ=255)
                    gATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCa                                                                                                                               <  2:644291/151‑1 (MQ=255)
                    gATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCa                                                                                                                               <  1:757935/151‑1 (MQ=255)
                      tttGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTTACGGCAAAAAAGACGGGCCTCGCGcc                                                                                                                                >  1:986718/1‑148 (MQ=255)
                       ttGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCAtt                                                                                                                             <  1:221743/150‑1 (MQ=255)
                       ttGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCAtt                                                                                                                             <  1:787568/150‑1 (MQ=255)
                           aaaTGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGTAAAAAAAAACGGGGTTTGCGCCCtt                                                                                                                             >  1:900127/1‑146 (MQ=255)
                              tGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGAAGTAAAAAAAAACGGGATTTGCGcccct                                                                                                                             >  2:375078/1‑140 (MQ=255)
                                 cGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGACGGAAAAAAAAGCGGGGATTTCGCCCTTGAagagg                                                                                                                     >  2:864783/1‑146 (MQ=255)
                                  gTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGAAAAAAAAGCGGGATTTTGGCCCTTGGAGAGgtt                                                                                                                  >  1:532388/1‑148 (MQ=255)
                                    ttGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGAAAAAAAAAAGGGGTTCGCGCCCTTTTAGAGgtt                                                                                                                  >  1:128563/1‑146 (MQ=255)
                                       aGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTa                                                                                                          <  2:295018/151‑1 (MQ=255)
                                        gCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTAc                                                                                                         <  1:984841/151‑1 (MQ=255)
                                          cGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGACGGAAAAAAAATCgggaatttcccccct                                                                                                                             >  2:926433/1‑118 (MQ=255)
                                           gTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACaaa                                                                                                      <  1:111018/151‑1 (MQ=255)
                                             ctcACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGAAAAAAAGGCGGGATTTGCGCCCTTTTAGAGGTTTGTTCTTTTaaaa                                                                                                     >  2:51411/1‑150 (MQ=255)
                                               cACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATc                                                                                                   <  2:308525/150‑1 (MQ=255)
                                               cACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGACGGAAAAAAAAAGGGGGTTTGCGCCCTTGAAGGGTTTTGGTCCtttataa                                                                                                      >  2:627547/1‑143 (MQ=255)
                                                   agaATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGAAAAAAAAGAGGGGTTTGCGCCCCTTAAGAGTTTGGTGCTTTTaaaaaaaa                                                                                                 >  1:565674/1‑144 (MQ=255)
                                                     aaTATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCg                                                                                            <  1:43463/151‑1 (MQ=255)
                                                              aaTCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAagag                                                                                    <  1:724863/150‑1 (MQ=255)
                                                              aaTCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGTAAAAAAAATCGGGATTTGCGCCCTTGTAGAGGTTTGTGCTTTCAAAATAAAAAGGGATaaa                                                                                       >  1:447569/1‑147 (MQ=255)
                                                                tCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAACGGAAAAGAAGACGGGATTTTCGCCCTTTGAGAGTGTGGGCCTTTCAAAAAAAAAAGCGCTAAaga                                                                                     >  2:338154/1‑147 (MQ=255)
                                                                   gAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGAt                                                                                  <  1:261983/147‑1 (MQ=255)
                                                                   gAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTa                                                                                <  1:964875/149‑1 (MQ=255)
                                                                    aaGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAACGGAAAAAAAAAGGGTATTTGCGGCCTTGAAGAGGTTGGGCCTTTCAAAAACAAAAGCGGTaaaaa                                                                                     >  1:543077/1‑141 (MQ=255)
                                                                       cTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGAAAAAAAGGAGGTATTTGCGCCCTTTTAGAGGTTGGTTCTTACAAAAAAAAAAGCGGTAAAGAGAATaatggt                                                                           >  1:792112/1‑145 (MQ=255)
                                                                       cTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGCAAAAGAAGGAGGGATTTGCGCCCTTGGAGAGGTTGGGGCTTCCAAAAACAAAAGCGGTAAAAAGATTATgt                                                                             >  1:305185/1‑147 (MQ=255)
                                                                             ccGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGACAGAAAAAAAAGCGGGATTTGCGCCATTTTAGGGGTTGGTTCTTTCAAAAACAACAGCGGGAAAaaga                                                                                   >  2:404738/1‑136 (MQ=255)
                                                                             ccGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGGAAAGAAAACGGGATTTTCGCCCTTTTAGAGGTTTGGTCTTATAAAAACAAAACCGGTAAAGAGAttttttg                                                                            >  2:506611/1‑138 (MQ=255)
                                                                                gATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGgacg                                                                 <  2:528055/151‑1 (MQ=255)
                                                                                    aaCCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAACGGAAAAGAAAACGGGATTTGCGCCCCTGTAGAGGTTTGTTCTTACAAAAAAAACAGCGGGAAAAAGAATATGggtcgctttgacg                                                                 >  2:483424/1‑139 (MQ=255)
                                                                                           tGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACa                                                       <  2:710438/150‑1 (MQ=255)
                                                                                            gAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAg                                                     <  2:421145/150‑1 (MQ=255)
                                                                                             aaGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAggg                                                   <  1:236031/151‑1 (MQ=255)
                                                                                               gTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGtt                                                 <  2:138122/151‑1 (MQ=255)
                                                                                                tGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGAAAGGAAAAAAAAGCGGGATTTGCGCCCTTGAAGAGGTTTGGTCTTTTAAAAAAAAAAGCGGTAAAAAGAATATTCGTCGGATGGGCGACCCGCTACAaggggt                                                >  1:191843/1‑148 (MQ=255)
                                                                                                 gctggctgCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGACGTAAAAAAAGACGGGGTTTGCGCCCTTTAAGAGGTTTGTTCTTTCAAAAAAAAACGCGGTAAAAAGATTATTTGTCGTATGGTGGACCCGCTCCAGGGgttt                                               >  1:388071/1‑151 (MQ=255)
                                                                                                    ggctgCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTttgtt                                            <  2:552733/151‑1 (MQ=255)
                                                                                                    ggctgCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGACGGAAAAAAAAAAGGGGTTTTCGGCCTTGTAGAGGTTTGTGCTTTCAAAAACAAAAGCGGAAAAGAGATTATTCGTCGTATGGGCGACCTGCCACAGGGGtttttt                                            >  2:920039/1‑151 (MQ=255)
                                                                                                         ccGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCa                                       <  1:502861/151‑1 (MQ=255)
                                                                                                          cGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAg                                      <  1:751602/151‑1 (MQ=255)
                                                                                                           gACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGc                                     <  2:612858/151‑1 (MQ=255)
                                                                                                            aCCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGGGAAGTAAAAGAAGGCGGGGTTCGCGGCCTTTAAGAGGTTGGGGCTTTCAAAAAAAAAAGCGAGAAAAAGAATATTGGTCGGATGGGGGACCTGCCACAGGGGTTTTTTTTCCCac                                      >  2:883085/1‑149 (MQ=255)
                                                                                                              cTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTGACATAAAAAAAGGCGGGATTTTCGCCCTTTAAGAGGTTTGGGCTTTTAAAAAAAAAGGCGATAAAGAGAATATTGGTCGTATGGGGGACCCGCTACACGGGTTttgtgtccagc                                      >  2:661982/1‑141 (MQ=255)
                                                                                                                  gcCGTGCGTTCTCCGGTATTGTGGCGGGGAACGTAAAAAAAAGCGGGGTTTGCGCCCCTGTAGAGTTTGGGGCTTTCAAAAACAAAAAGGATAAAAAAAAAATTCATCGTATGGGGGAACCGCCACAGGGGGTTGTTGTCCCGCATCg                                 >  2:245603/1‑148 (MQ=255)
                                                                                                                              ccGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCa                    <  1:793951/149‑1 (MQ=255)
                                                                                                                                             gTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATccc   >  1:524806/1‑151 (MQ=255)
                                                                                                                                             gTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCt  >  1:817013/1‑151 (MQ=255)
                                                                                                                                              |                                                                                                                                                         
GGTCAATGCGCATTGCGCCAGATTTGCAAATGCCGTTTGAGCCGTCTCACGAGAATATGGCTAATCTGAAGCTTTACCCGGATCAACCTGTTGAAGTGCTGGCTGCCGACCTGCGCCGTGCGTTCTCCGGTATTGTGGCGGGTAACGTAAAAGAAGTCGGTATTCGCGCCATTGAAGAGTTTGGTCCTTACAAAATCAACGGCGATAAAGAGATTATGCGTCGTATGGACGACCTGCTACAGGGTTTTGTTGCCCAGCATCGTATGAAGTTGCCAGGCTCAGCCTACATCCCT  >  NC_000913/2927359‑2927651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: