mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 245 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 226,299 | 0 | A | C | 79.9% | 144.2 / 171.1 | 299 | noncoding (541/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,817 | 0 | G | A | 79.1% | 4.1 / 21.7 | 43 | noncoding (1299/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,805 | 0 | G | A | 75.6% | 12.3 / 28.9 | 45 | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,807 | 0 | C | A | 75.6% | 13.9 / 34.1 | 45 | noncoding (1289/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,809 | 0 | G | C | 75.6% | 14.3 / 34.4 | 45 | noncoding (1291/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,811 | 0 | T | A | 75.6% | 13.9 / 32.3 | 45 | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 226,354 | 0 | T | A | 74.5% | ‑1.5 / 122.3 | 153 | noncoding (596/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,781 | 0 | A | G | 73.2% | 23.6 / 50.5 | 71 | noncoding (1263/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,797 | 0 | G | T | 72.0% | 21.5 / 43.0 | 50 | noncoding (1279/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,795 | 0 | C | G | 70.6% | 26.9 / 48.0 | 51 | noncoding (1277/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 226,357 | 0 | A | G | 70.5% | 21.7 / 107.8 | 129 | noncoding (599/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,790 | 0 | T | C | 70.2% | 28.0 / 46.0 | 57 | noncoding (1272/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,744 | 0 | G | A | 70.0% | 48.9 / 78.9 | 90 | noncoding (1226/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,038,747 | 0 | A | T | 70.0% | 55.2 / 86.9 | 90 | noncoding (1229/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 226,371 | 0 | A | T | 69.9% | 33.6 / 97.1 | 103 | noncoding (613/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,392 | 0 | C | G | 69.9% | 37.7 / 75.5 | 73 | noncoding (634/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,793 | 0 | A | T | 69.2% | 27.8 / 46.0 | 52 | noncoding (1275/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 226,381 | 0 | C | G | 69.2% | 39.0 / 92.5 | 94 | noncoding (623/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,741 | 0 | T | A | 68.9% | 62.2 / 94.5 | 91 | noncoding (1223/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 226,378 | 0 | G | T | 68.8% | 40.5 / 101.4 | 96 | noncoding (620/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 61 (1.220) | 3 (0.060) | 3/280 | 9.3 | 4.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 59 (1.260) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||