Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4520CA44.8% 56.6 / 32.2 58intergenic (‑196/‑11)ttdR/ttdAtranscriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base C (13/19);  new base A (26/0);  total (39/19)
Fisher's exact test for biased strand distribution p-value = 4.20e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTC  >  NC_000913/3206306‑3206599
                                                                                                                                                   |                                                                                                                                                   
gCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAACTg                                                                                                                                                   >  2:378244/1‑149 (MQ=255)
gCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGa                                                                                                                                                 <  2:248015/151‑1 (MQ=255)
  cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATAAAAAAACTGGAg                                                                                                                                                >  1:661985/1‑150 (MQ=255)
         tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGGTGGCat                                                                                                                                         >  1:523622/1‑150 (MQ=255)
         tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAATAAAAAAACTGGAGTTGcc                                                                                                                                           >  1:9256/1‑148 (MQ=255)
             ctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAAAAAAAAAAAAAATGGAGTTGGCatgat                                                                                                                                      >  2:428535/1‑149 (MQ=255)
                    aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAAACAAATAAAAAAAATGGAGTTGGCATGATGAGCg                                                                                                                                 >  1:497806/1‑147 (MQ=255)
                    aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAATACAAAAAATGGAGGTGGCATGATGAGCGgaa                                                                                                                              >  1:141657/1‑150 (MQ=255)
                        ttcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCCGACAAAAAACAAAAATGGAGGTGCCCTGATGGGCGAAAGtaa                                                                                                                          >  2:8207/1‑150 (MQ=255)
                           attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAATACAAAAAATGGAGGTTCCATGATGAGCGAAAAaaataa                                                                                                                       >  1:47447/1‑150 (MQ=255)
                           attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAg                                                                                                                      <  1:501024/151‑1 (MQ=255)
                                 aTTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACa                                                                                                                 <  2:534615/150‑1 (MQ=255)
                                   tttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAAAAAAAAAAATGGAGTTGTCATGATGAGCGAAAGTAATAAACaaaa                                                                                                                 >  2:783257/1‑146 (MQ=255)
                                     tCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATAAAAAAAATGGGGTTGCCATGATGAGCGGAAATAATAAACaaaaag                                                                                                               >  2:3139/1‑144 (MQ=255)
                                        cgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAAAAAAAAAAAAACTGGAGTTGGCATGATGAGCGAAAAGAATAAACAAAAAGCAGTg                                                                                                          >  1:898663/1‑150 (MQ=255)
                                                   gAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGCGGAAGAAATAAGCAAAAAGCAGGGAATAAGtt                                                                                                  >  1:159832/1‑147 (MQ=255)
                                                   gAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAAGCAGTGAATAAGTTGAc                                                                                               >  2:304877/1‑150 (MQ=255)
                                                       tGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATAAAAAAAATGGAGTTGGCATGATGAGCGGAAGAAATAAACAAAAAGCAGTGAATAAGGTGACa                                                                                              >  1:973623/1‑147 (MQ=255)
                                                        gTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACagag                                                                                           <  1:930924/149‑1 (MQ=255)
                                                        gTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACagag                                                                                           <  1:75588/149‑1 (MQ=255)
                                                         ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGGGTTGTCCTGATGAGCGAAAAAAATAAGCAACAGGCAGGGAATAAGTTGACAGAGAt                                                                                         >  2:8327/1‑150 (MQ=255)
                                                              tACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATACAAAAACTGGAGTTTGCATGATGAGCGAAAGTAATAAACAAAAAGCAGGGAAAAAATTGGAAGAGATTGTCg                                                                                    >  1:282101/1‑150 (MQ=255)
                                                               aCATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAAAAATACAAAAACTGGAGTTGGCATGATGAGGGAAAGTAATAAAAAAAAAGCAGAGAATAAATTGACAGAGATTGTGGCt                                                                                  >  1:726526/1‑151 (MQ=255)
                                                                 atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCACACAAATACAAAAAATGGAGTTGGCATGATGAGGGAAAAGAATAAAGAACAGGGAGGGAATAAGTTGACAAAGATTGTTGCt                                                                                  >  1:720842/1‑149 (MQ=255)
                                                                  tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGGGAAAGTAATAAACAAAAGGCAGGGAATAAGTTGACAGAGATTGTCGCTaa                                                                                >  2:834457/1‑150 (MQ=255)
                                                                   atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAATAAAAAAAATGGAGTTGGCATGGTGGGCGGAAATAATAAGCAAAAGGCAGTGAATAAAATTAAAGAGATTTTCGCTAAc                                                                               >  1:371845/1‑150 (MQ=255)
                                                                     tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACtt                                                                             <  1:549283/150‑1 (MQ=255)
                                                                     tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAAAAAAACAAAAAATGGAGTTGGCATGATGAGCGAAAGTAATAAACAACAAGCAGGGAATAAGTTGACAGAGATTTTCGCTAAAttt                                                                            >  1:226939/1‑151 (MQ=255)
                                                                      cACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTa                                                                           <  2:81306/151‑1 (MQ=255)
                                                                      cACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGTATTTTTCCCAACAAATACAAAAAATGGAGGTTCCATGATGCAGGAAAGGAAAAAGCAAAAGGGAATGAATAAATTGACAGAGATTTTCGCTaaactt                                                                            >  1:988533/1‑146 (MQ=255)
                                                                        cGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAAAACAAAAAATGGAGTTGGCATGATGAGCGGAAGGAAAAAACAAAAGGCAGGGAATAAATTGAAAGAGATTGTCGCCAACTTTTcc                                                                         >  1:24119/1‑151 (MQ=255)
                                                                            ggCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGAATTTTTCAAACAAAAACAAAAAAAGGGGGTTGCCTGATGAGCGAAAGGAAAAAACAAAAAGCAGGGAATAAAATTACAGAGAATGTTGCTAAATTTaacccc                                                                      >  1:516878/1‑145 (MQ=255)
                                                                                  aaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGCGAAAGTAATAAACAACAGGCAGTGAATAAGTTGACAGAGAATATCGCTAAATTTACCGCCATGAttt                                                               >  1:735509/1‑151 (MQ=255)
                                                                                   aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGGTGCCATGATGAGCGAAAGTAATAAGCAAAAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGAttt                                                               >  2:692938/1‑150 (MQ=255)
                                                                                   aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGTTGCCCTGATGAGCGAAAGTAATAAGCAACAAGCAGGGAATAAAGTGGAAGAGATTGTCGCTAACTTTACCGCCATGAttt                                                               >  2:380316/1‑150 (MQ=255)
                                                                                              acaTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGGCCTGATGAGCGAAAGAAAAAAACAACAGGCAGGGAATAAGTTTACAAAGAATGTCGCTAACTTTAACGCCATGATTTTTACCCGaa                                                      >  2:363384/1‑148 (MQ=255)
                                                                                                  ttttAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAAGCAGTGAATAAGTTGACAGAGATTGTCGCTCACTTTTCCCCCATGATTTTTTCCCCAATGcc                                                  >  2:305103/1‑148 (MQ=255)
                                                                                                    ttAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgat                                              <  1:830339/150‑1 (MQ=255)
                                                                                                         ggTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgtg                                        <  2:160303/151‑1 (MQ=255)
                                                                                                         ggTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATACAAAAACTGGATTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGAc                                           <  1:207948/148‑1 (MQ=255)
                                                                                                         ggTAGTTTGTGGCGGTGAAATTTTTCAGACAAATACAAAAAAAGGAGTTGGCATGATGAGCGAAAGTAATAAGCAACAGGCAGGGAATAAGTTGATAGAGATTTTAGCCAACCTTACCGCCAAGATTTCTACCCGAATGCCTGATGACggg                                        >  1:123170/1‑149 (MQ=255)
                                                                                                            aGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGGTGGCATGATGAGCGAAAGTAATAAGCAACAAGCAGTGAATAAGTTGACAGAGATTGTCGCTAAATTTACCGCCATGATTTCTACCCGAATACCTGATGACgtgggg                                     >  2:885780/1‑149 (MQ=255)
                                                                                                              tttGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGtggtgg                                    <  2:249499/150‑1 (MQ=255)
                                                                                                                 gtgGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGCGGAAGTAATAAACAAAAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTTTACCCGAATGCCTGATGACGTGGGGGGTa                                 >  1:966023/1‑150 (MQ=255)
                                                                                                                  tgGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATaa                                <  2:523666/150‑1 (MQ=255)
                                                                                                                    gCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAAATTGTCGCTATCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACt                             <  1:402938/151‑1 (MQ=255)
                                                                                                                      ggTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTa                            >  1:282849/1‑150 (MQ=255)
                                                                                                                        tGAATTTTTCCAGACAAATACAAAAACTTGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGACAGCCTGATGACGTGGAGGATAAACTaaa                          >  1:404770/1‑150 (MQ=255)
                                                                                                                        tGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaa                          >  1:811242/1‑150 (MQ=255)
                                                                                                                          aaTTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACa                       <  2:180954/151‑1 (MQ=255)
                                                                                                                             ttttCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCAAAAGAAAAAAGCAACAGGCATTGATTAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGc                     <  1:258843/150‑1 (MQ=255)
                                                                                                                                    gACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAt             >  2:484815/1‑151 (MQ=255)
                                                                                                                                     aaaaaTACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTACCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATg            <  2:715778/149‑1 (MQ=255)
                                                                                                                                     aaaaaTACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGAt             <  1:866219/148‑1 (MQ=255)
                                                                                                                                       aaaTACAAAAACTGGAGTTGCCATGATGAGCGAAAGAAAAAAGCAACAGGCAGTAAATAAGTTGACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGc           <  1:840986/150‑1 (MQ=255)
                                                                                                                                         aTACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCg         >  2:151710/1‑150 (MQ=255)
                                                                                                                                              aaaaaCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcg    >  1:562007/1‑151 (MQ=255)
                                                                                                                                               aaaaCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgt   <  2:662049/151‑1 (MQ=255)
                                                                                                                                                aaccTGGAGTTGCCATGATGAGCGAAAGTAAAAAGAAACAGGCAGTAAATAAGTTGAAAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgtc  <  1:1023010/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTC  >  NC_000913/3206306‑3206599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: