| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,606,886 | Δ11,558 bp | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1606886 | 1618443 | 11558 | 55 [0] | [0] 52 | [lsrF]–[marC] | [lsrF], lsrG, tam, yneE, uxaB, yneF, yneG, glsB, sad, yneJ, yneK, ydeA, [marC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1606885 | 0 (0.000) | 51 (0.990) | 46/296 | 0.3 | 100% | coding (786/876 nt) | lsrF | putative autoinducer‑2 (AI‑2) aldolase |
| ? | NC_000913 | 1618444 = | 0 (0.000) | coding (465/666 nt) | marC | UPF0056 family inner membrane protein | |||||
CCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGCT > NC_000913/1618296‑1618593 | gattgttgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTAc > 2:697212‑M2/149‑151 (MQ=255) tgttgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTAccc > 1:508150‑M2/146‑150 (MQ=255) tgttgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTAccc < 2:154561‑M2/5‑1 (MQ=255) tgccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATc > 2:614777‑M2/143‑151 (MQ=255) gccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATc > 1:44012‑M2/142‑150 (MQ=255) gccggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATc < 1:576925‑M2/9‑1 (MQ=255) cggatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGc > 2:500681‑M2/140‑151 (MQ=255) gatgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGa < 1:437934‑M2/14‑1 (MQ=255) atgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGaa < 1:443362‑M2/15‑1 (MQ=255) atgtccggtacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGa > 2:567726‑M2/137‑150 (MQ=255) tacccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAAc > 2:560776‑M2/129‑151 (MQ=255) acccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAAc < 2:601125‑M2/23‑1 (MQ=255) cccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAActc < 2:103557‑M2/25‑1 (MQ=255) cccattgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAActc > 2:642716‑M2/127‑151 (MQ=255) attgttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGa < 1:39385‑M2/28‑1 (MQ=255) gttattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACg < 2:139591‑M2/30‑1 (MQ=255) tattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCa < 1:261709‑M2/32‑1 (MQ=255) tattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCAc > 2:327057‑M2/119‑151 (MQ=255) tattgctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCAc > 1:220574‑M2/119‑151 (MQ=255) gctggcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACtgt < 1:252439‑M2/36‑1 (MQ=255) gcggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACg < 1:618603‑M2/41‑1 (MQ=255) cggtaaaaaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGc < 1:759284‑M2/42‑1 (MQ=255) aaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCta < 2:304479‑M2/49‑1 (MQ=255) aaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCta < 2:195218‑M2/49‑1 (MQ=255) aaattaccggagcgcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCt > 2:82806‑M2/103‑150 (MQ=255) gcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTa < 1:503656‑M2/62‑1 (MQ=255) gcgaggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTa < 1:663788‑M2/62‑1 (MQ=255) aggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATgg > 2:572392‑M2/87‑151 (MQ=255) ggcgctggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGt < 2:462204‑M2/66‑1 (MQ=255) tggaaatgtgctggcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCg > 1:78174‑M2/81‑151 (MQ=255) gcaggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACt < 2:241470‑M2/84‑1 (MQ=255) aggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTg > 1:707380‑M2/66‑151 (MQ=255) aggctatcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTg < 1:217202‑M2/86‑1 (MQ=255) atcgatcagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCa < 1:83978‑M2/89‑1 (MQ=255) cagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAg < 2:806385‑M2/96‑1 (MQ=255) cagggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAg < 1:167111‑M2/96‑1 (MQ=255) agggcgcttctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCg > 1:737090‑M2/54‑151 (MQ=255) ctggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAgg > 1:603525‑M2/45‑151 (MQ=255) tggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGc > 2:597254‑M2/44‑151 (MQ=255) ggtgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCa < 1:711606‑M2/109‑1 (MQ=255) tgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAat > 1:734989‑M2/41‑151 (MQ=255) tgtggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAat > 1:571773‑M2/41‑151 (MQ=255) ggatatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATAtt > 2:286597‑M2/38‑151 (MQ=255) atatggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTgg > 1:108940‑M2/36‑151 (MQ=255) atggggcgtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCa < 2:66162‑M2/118‑1 (MQ=255) gtaatattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGtt < 2:516023‑M2/125‑1 (MQ=255) tattttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATc > 2:20141‑M2/23‑151 (MQ=255) ttttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCtt > 2:63330‑M2/21‑151 (MQ=255) ttccagtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTcc > 2:779671‑M2/19‑151 (MQ=255) gtctgaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGctc < 1:697281‑M2/138‑1 (MQ=255) gaccatccgTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCtt < 1:32519‑M2/140‑1 (MQ=255) gTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGCt < 2:471906‑M2/150‑1 (MQ=255) | CCATACATACCAGCAGGAATCCCATCAGACGGGAGATCGCTTCAATGCCACCCTTGCCCACCAGCCGCATAATTGCGCCGGAGCTGCGTAGGCTTCCCCACAAAATAACCGCCACCAGGAAAAAGATCAGCGGCGGCGCAACCATCAGTACCCAATCAGCGAAGGTTGAACTCTGACGCACTGTGGACGCCGAGCTAATAATCATCGCTATGGTTCCCGGACCGGCAGTACTTGGCATTGCCAGCGGCACAAAGGCAATATTGGCACTGGGTTCATCTTCCAGCTCTTCCGACTTGCT > NC_000913/1618296‑1618593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |