| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 226,574 | 0 | C | T | 69.6% | 84.1 / 81.5 | 92 | noncoding (816/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| Reads supporting (aligned to +/- strand): ref base C (10/18); new base T (34/30); total (44/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
GGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACACGGCGGGTGCTAACGTC > NC_000913/226454‑226722 | ggCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAAc < 1:603770/151‑1 (MQ=11) gAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTc‑c > 1:366758/1‑151 (MQ=31) taggTAACACTGACTGGAGGACCGAACCCACTCCCGTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATgtatcactctggg < 2:209539/144‑13 (MQ=0) taggTAACACTGACTGGAGGACCGAACCCACTCCCGTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATgtatcactctggg > 1:209556/3‑134 (MQ=0) gggTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGt < 2:274170/150‑1 (MQ=31) ggTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTag < 1:442925/151‑1 (MQ=31) aaCACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGc > 1:687420/1‑151 (MQ=31) cacTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCAc < 2:176382/151‑1 (MQ=31) aCTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGttt > 2:300773/1‑151 (MQ=31) cTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTc > 2:37725/1‑151 (MQ=31) ggaggaCCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTc < 2:729531/149‑1 (MQ=31) ggaggaCCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCgg > 1:702472/1‑151 (MQ=31) ggaggaCCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCgg < 1:70505/151‑1 (MQ=31) accgaaccgaCTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAgg < 2:699605/151‑1 (MQ=31) accgaacccaCTCCCTTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATgtatcactctg > 1:66878/1‑114 (MQ=0) accgaacccaCTCCCTTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATgtatcactctg < 2:66871/124‑11 (MQ=0) ccgaacccaCTCCCGTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATgtatcactctggg < 2:361341/125‑13 (MQ=0) ccgaacccaCTCCCGTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATgtatcactctggg > 1:361379/1‑113 (MQ=0) tAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCg > 1:685312/1‑151 (MQ=31) aaaTTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAAc < 2:720420/151‑1 (MQ=31) aGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGAt < 2:783043/151‑1 (MQ=31) aGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGAt > 2:44732/1‑151 (MQ=31) gggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc > 2:60966/2‑118 (MQ=0) gggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc < 1:60973/117‑1 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGt > 2:312736/1‑111 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGt < 1:312767/111‑1 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 2:383920/1‑116 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 1:383960/116‑1 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc < 1:242630/117‑1 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc > 2:242605/1‑117 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCa > 1:110064/1‑150 (MQ=1) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCa > 2:230610/1‑150 (MQ=1) ggATAACTTGTGGAACGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCa > 1:282477/1‑150 (MQ=0) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGct < 1:144954/117‑2 (MQ=0) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCaa > 1:724366/1‑150 (MQ=1) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCaa > 2:173217/1‑150 (MQ=1) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTAGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAggg < 2:334662/121‑1 (MQ=0) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTAGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAggg > 1:334698/1‑121 (MQ=0) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgggggcc < 1:398972/124‑3 (MQ=0) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgggggcc > 2:398932/1‑122 (MQ=0) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAAc < 1:173230/151‑1 (MQ=1) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTACTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAAc > 2:275068/1‑151 (MQ=1) gACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACtc > 1:391795/1‑150 (MQ=1) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGcta > 1:352892/1‑111 (MQ=0) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGcta < 2:352854/113‑3 (MQ=0) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc < 1:123993/111‑1 (MQ=0) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc > 2:123981/1‑111 (MQ=0) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgg > 1:32331/1‑115 (MQ=0) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgg < 2:32326/115‑1 (MQ=0) tgtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 2:354666/108‑1 (MQ=0) tgtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 1:354704/1‑108 (MQ=0) tgtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGa > 2:137510/1‑150 (MQ=1) gtgGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGa < 1:526095/150‑1 (MQ=31) gtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGaa > 1:255553/1‑150 (MQ=1) gtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAAt > 2:343317/1‑151 (MQ=1) ggatcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTACCACTCT‑‑GGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAc > 1:775449/9‑151 (MQ=11) gatcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAGGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCaaac > 2:1174/8‑129 (MQ=0) gatcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAGGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCaaac < 1:1174/124‑3 (MQ=0) gatcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 1:141159/8‑104 (MQ=0) gatcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 2:141147/97‑1 (MQ=0) gCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATAc < 2:189193/151‑1 (MQ=31) atcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGAGGTCATCCCGACTTACCAAacc > 2:319663/7‑131 (MQ=0) atcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGAGGTCATCCCGACTTACCAAacc < 1:319696/125‑1 (MQ=0) atcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGAACTGTTTCGGCTAgg > 2:51347/7‑108 (MQ=0) atcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGAACTGTTTCGGCTAgg < 1:51353/102‑1 (MQ=0) gggggTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCg < 1:529172/150‑1 (MQ=31) cggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccag < 1:137522/147‑4 (MQ=1) ggggTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCgg > 2:295880/1‑150 (MQ=31) gTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagt > 1:120653/1‑144 (MQ=1) gTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaag > 1:162012/1‑144 (MQ=1) tGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCCAggg > 2:56283/1‑102 (MQ=0) tGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCCAggg < 1:56290/102‑1 (MQ=0) gAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑Tg < 2:52124/151‑1 (MQ=31) aGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccga < 1:230628/151‑13 (MQ=0) ggCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccgag < 2:120641/151‑14 (MQ=0) ggCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccgag < 1:343354/151‑14 (MQ=0) ccGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGaca < 2:216082/151‑1 (MQ=31) ccGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGaca < 2:264072/151‑1 (MQ=31) cGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGacac < 2:28914/151‑1 (MQ=31) ggAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGacacac > 1:736034/1‑151 (MQ=31) gagaTAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACAcg < 2:350340/151‑1 (MQ=31) aGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTACCACTCT‑‑GGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCATGGGAGACACAcggcgg < 2:775367/150‑1 (MQ=2) aGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCATGGGAGACACAcggcgg < 1:188242/150‑1 (MQ=0) aGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCATGGGAGACACAcggcgg < 2:110053/150‑1 (MQ=0) aGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCATGGGAGACACAcggcgg < 2:282449/150‑1 (MQ=0) aGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCATGGGAGACACACGGCggg < 2:724293/151‑1 (MQ=0) aGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCACGGGAGACACACGGCggg < 2:255527/151‑1 (MQ=0) gCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCATGGGAGACACACGGCggg > 2:295485/1‑150 (MQ=0) gCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACACGGCggg > 1:695421/1‑150 (MQ=31) gCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACACGGCGGGt < 2:721155/151‑1 (MQ=31) cTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACC‑CAGAAGTGCCGAGCATGGGAGACACACGGCGGGTg > 1:365667/1‑151 (MQ=0) atcCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAGTACC‑CAGAAGTGCCGAGCATGGGAGACACACGGCGGGTGCTAAcg > 2:309347/2‑151 (MQ=0) ccccGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACACGGCGGGTGCTAAcgtc < 1:154779/151‑1 (MQ=31) ccccGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACACGGCGGGTGCTAAcgtc < 1:446578/151‑1 (MQ=31) ccccGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACACGGCGGGTGCTAAcgtc < 2:395903/151‑1 (MQ=31) | GGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAA‑TG‑TTATCACGGGAGACACACGGCGGGTGCTAACGTC > NC_000913/226454‑226722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |