| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 226,545 | 0 | C | T | 65.9% | 90.3 / 93.3 | 85 | noncoding (787/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| Reads supporting (aligned to +/- strand): ref base C (8/21); new base T (34/22); total (42/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.71e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.80e-01 | |||||||||||
GAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCA > NC_000913/226462‑226694 | gAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTc‑c < 2:240608/151‑1 (MQ=31) ggTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑Cggg > 1:711232/1‑151 (MQ=31) gTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑Cgggg < 1:524639/151‑1 (MQ=31) gTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑Cgggg < 2:723551/151‑1 (MQ=31) ggTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTag < 2:746860/151‑1 (MQ=31) cacTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCAc < 1:710448/151‑1 (MQ=31) aaCTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGtt > 1:573026/1‑151 (MQ=31) aaCTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGt < 2:115873/150‑1 (MQ=31) aCTGGAGTACCGATCCGACTAATGTTGAAAAATGAGCGGATGCCTTGTGGCCGGGGGTTAAAGGCCAGACAAACCGGGACATAGCTGGTTCTACGCGAAAGCTATTTAGGTAGCGCCTCGTCAACTCACCGC‑CGGGGGTAGAGTATTGttt < 2:199450/151‑1 (MQ=11) aCTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGttt < 1:403231/151‑1 (MQ=31) cTGGAGGACCGAACCCACTCCCTTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCAc < 2:300627/144‑1 (MQ=0) cTGGAGGACCGAACCCACTCCCTTTGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCAc > 1:300671/1‑144 (MQ=0) ggaggaCCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCg < 1:603221/150‑1 (MQ=31) ccgaacccactccctttGAAAAGGTAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgggg > 1:16533/16‑151 (MQ=0) aaccgaCTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGt < 2:358605/151‑1 (MQ=31) cTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATccc > 2:708293/1‑151 (MQ=31) tGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACt > 1:702532/1‑151 (MQ=31) gTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACt < 1:13821/150‑1 (MQ=31) gAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTAc < 1:321925/150‑1 (MQ=31) aTTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAAccc < 1:712811/151‑1 (MQ=31) ttAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCg > 2:429492/1‑151 (MQ=31) aGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGAt < 1:728554/151‑1 (MQ=31) aGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGAt < 2:653170/151‑1 (MQ=31) gggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGc > 2:292717/2‑150 (MQ=1) gggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGc > 2:368845/2‑150 (MQ=1) cGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGc > 1:161152/1‑151 (MQ=31) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 2:225226/116‑1 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 1:84870/116‑1 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 2:306068/1‑116 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 2:84856/1‑116 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 1:225264/1‑116 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 1:306114/116‑1 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgggggg > 2:299485/1‑124 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgggggg < 1:299529/125‑2 (MQ=0) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCaaac < 1:253613/143‑3 (MQ=1) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCaaac > 2:253573/1‑141 (MQ=1) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCa > 1:159533/1‑150 (MQ=1) ggATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCa > 1:266870/1‑150 (MQ=1) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 1:55196/115‑1 (MQ=0) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 2:55187/1‑115 (MQ=0) gATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCaa > 1:341753/1‑150 (MQ=1) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgg < 2:266861/119‑1 (MQ=0) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgg < 2:59435/119‑1 (MQ=0) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgg > 1:266901/1‑119 (MQ=0) aTGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAgg > 1:59446/1‑119 (MQ=0) gACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAAc < 2:291711/150‑1 (MQ=31) cTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGc > 1:276242/1‑151 (MQ=31) cTTGTGGATCGGGGTGAAATGCTAATCAAGCTCGGAGATATCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGAAAACt < 1:266334/148‑1 (MQ=0) cTTGTGGATCGGGGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTACTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGGAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGaaaa > 2:266294/1‑146 (MQ=0) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCAATGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAAc < 1:20833/147‑1 (MQ=1) cTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCAATGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAAc > 2:20828/1‑147 (MQ=1) tgtgGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCg < 2:126554/150‑1 (MQ=31) tgtgGATCGGAGTGAGAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGa > 2:313589/1‑150 (MQ=0) tgtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAggg > 1:350899/1‑114 (MQ=0) tgtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAggg < 2:350849/114‑1 (MQ=0) tgtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGa > 1:2085/1‑150 (MQ=1) gtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAAt > 2:607470/1‑151 (MQ=1) gtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAAt > 1:605911/1‑151 (MQ=1) gtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCATCGAAAGCTATTTAGGTAGCGCCTCATgtatcac < 1:113163/82‑7 (MQ=0) gtgGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCATCGAAAGCTATTTAGGTAGCGCCTCATgtatcac > 2:113147/1‑76 (MQ=0) ggattggagTGAAAGGCTAATCAAGTTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAg < 2:74757/101‑1 (MQ=0) ggattggagTGAAAGGCTAATCAAGTTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAg > 1:74771/9‑109 (MQ=0) ggatcggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTGGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAc > 2:146823/9‑151 (MQ=0) ggCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATa < 2:594881/151‑1 (MQ=31) gggggTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCg < 2:456659/150‑1 (MQ=31) cggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc < 2:110232/98‑1 (MQ=0) cggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc > 1:110247/5‑102 (MQ=0) cggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAccc > 1:316215/5‑148 (MQ=1) ggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc > 1:295030/4‑101 (MQ=0) ggagTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGc < 2:294986/98‑1 (MQ=0) ggagTGAAAGGCTAATAAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAccc > 2:300781/4‑147 (MQ=1) gTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCTGACTTACCAAACCGATGCAAACTCCGAATAcccagaagt > 1:326661/1‑144 (MQ=1) tGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTGGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg > 1:181601/1‑96 (MQ=0) tGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTGGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCgg < 2:181570/96‑1 (MQ=0) tGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACT‑TTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgc > 1:280834/1‑142 (MQ=0) gAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACGCCGAATAcccagaagtgc > 2:361085/1‑142 (MQ=0) aaGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgtcg < 2:341704/151‑12 (MQ=0) aaGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGtt < 2:418815/151‑1 (MQ=31) aGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccga < 1:44890/151‑13 (MQ=0) aGGCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACT‑TTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccgag < 2:280794/151‑14 (MQ=0) ggCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccgag < 1:371723/151‑14 (MQ=0) ggCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccgag < 1:313637/151‑14 (MQ=0) ggCTAATCAAGCTCGGAGATAGCTGGTTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATGTA‑TCA‑CTCTGGGGGGTAGAGCACTGTTTCGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATAcccagaagtgccg > 1:226843/1‑138 (MQ=0) ggCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTAAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTAt < 2:447823/151‑1 (MQ=14) gCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATc > 1:570489/1‑151 (MQ=31) ccAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCa < 1:682430/151‑1 (MQ=31) ccAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCa < 1:698196/151‑1 (MQ=31) | GAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTC‑CGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCA > NC_000913/226462‑226694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |