Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,392,752 Δ3,292 bp IS5‑mediated [pgrR]ynaI [pgrR], mppA, ynaI

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1392752 1397160–1396040 3289–4409 59 [0] [29] 30 [pgrR]–insH1 [pgrR], mppA, ynaI, insH1

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13927510 (0.000)59 (1.000) 43/298 0.7 100% coding (761/900 nt) pgrR murein peptide degradation regulator
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

CGCTGGAGATTAATACGCGGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATCACCTGTACTATCCACACCGTCGACATGCTGGCTCGGCATTCTCATTATTTATAGATAGGCTGAAGTATAAAGGTGCTGTTTAGCACTACTTGCT  >  NC_000913/1392603‑1392901
                                                                                                                                                    |                                                                                                                                                      
cGCTGGAGATTAATACGCGGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAg                                                                                                                                                       <  1:23256‑M1/150‑2 (MQ=255)
    ggAGATTAATACGCGGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaa                                                                                                                                                    <  2:353191‑M1/149‑5 (MQ=255)
        aTTAATACGCGGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcg                                                                                                                                              >  1:686506‑M1/1‑141 (MQ=255)
           aaTACGCGGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaac                                                                                                                                           >  2:903607‑M1/1‑138 (MQ=255)
              aCGCGGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaag                                                                                                                                        <  1:344262‑M1/151‑17 (MQ=255)
               cgcgGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagt                                                                                                                                       >  1:307196‑M1/1‑134 (MQ=255)
                gcgGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtc                                                                                                                                      >  2:361328‑M1/1‑133 (MQ=255)
                  ggTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccc                                                                                                                                    <  1:277359‑M1/151‑21 (MQ=255)
                     ggACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctga                                                                                                                                 <  2:476695‑M1/151‑24 (MQ=255)
                     ggACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctg                                                                                                                                  >  2:489620‑M1/1‑128 (MQ=255)
                     ggACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctg                                                                                                                                  <  1:382910‑M1/150‑23 (MQ=255)
                       aCGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgata                                                                                                                               <  2:157613‑M1/151‑26 (MQ=255)
                         gTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatg                                                                                                                             <  1:291225‑M1/151‑28 (MQ=255)
                          tGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatg                                                                                                                             <  1:871788‑M1/150‑28 (MQ=255)
                                tCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcat                                                                                                                      >  2:452829‑M1/1‑117 (MQ=255)
                                tCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcat                                                                                                                      >  2:215737‑M1/1‑117 (MQ=255)
                                  gtgtTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                                                                                     >  1:355264‑M1/1‑115 (MQ=255)
                                    gtTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                                   <  1:678135‑M1/150‑38 (MQ=255)
                                               aGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                                         >  1:573247‑M1/1‑102 (MQ=255)
                                                        tttACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                                                                                              >  1:702563‑M1/1‑93 (MQ=255)
                                                          tACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                                                                             <  2:568470‑M1/150‑60 (MQ=255)
                                                                  aCGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                                    >  2:253140‑M1/1‑83 (MQ=255)
                                                                       aGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag                                                                               <  2:890817‑M1/151‑74 (MQ=255)
                                                                          ccTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                            <  2:898864‑M1/151‑77 (MQ=255)
                                                                           cTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                                           >  1:849331‑M1/1‑74 (MQ=255)
                                                                            tGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                                           >  1:267040‑M1/1‑73 (MQ=255)
                                                                               tCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                                       >  2:822068‑M1/1‑70 (MQ=255)
                                                                                cATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                                      <  1:835390‑M1/151‑83 (MQ=255)
                                                                                       gctgcAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt                                                                >  1:868321‑M1/1‑62 (MQ=255)
                                                                                          gcAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                             <  1:828483‑M1/150‑92 (MQ=255)
                                                                                            aaTTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg                                                           >  1:62089‑M1/1‑57 (MQ=255)
                                                                                                     gCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                                 <  2:686576‑M1/151‑104 (MQ=255)
                                                                                                        tGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc                                                >  1:722864‑M1/1‑45 (MQ=255)
                                                                                                         ggATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc                                             >  2:75186‑M1/1‑44 (MQ=255)
                                                                                                               gCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag                                       <  1:758332‑M1/151‑114 (MQ=255)
                                                                                                                cGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                      <  2:573301‑M1/151‑115 (MQ=255)
                                                                                                                cGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                      <  1:361296‑M1/151‑115 (MQ=255)
                                                                                                                   aTCTACCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc                                   >  1:396294‑M1/1‑34 (MQ=255)
                                                                                                                       aCCTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc                                >  2:437141‑M1/1‑30 (MQ=255)
                                                                                                                        ccTTATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca                               <  2:184467‑M1/150‑122 (MQ=255)
                                                                                                                           tATGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                            <  2:447520‑M1/150‑125 (MQ=255)
                                                                                                                            aTGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacca                          <  1:904714‑M1/151‑127 (MQ=255)
                                                                                                                            aTGATCAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacca                          <  1:651243‑M1/151‑127 (MQ=255)
                                                                                                                                 cAGGTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa                      <  2:197964‑M1/150‑131 (MQ=255)
                                                                                                                                    gTTGAGCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag                  <  1:609163‑M1/151‑135 (MQ=255)
                                                                                                                                         gCGGGCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt             <  1:107795‑M1/151‑140 (MQ=255)
                                                                                                                                            ggCTATTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt          >  2:238621‑M1/1‑9 (MQ=255)
                                                                                                                                                aTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt        <  2:338597‑M1/149‑145 (MQ=255)
                                                                                                                                                  tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc       >  1:536543‑M1/1‑3 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc   <  2:683536‑M1/151‑150 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc   >  1:787795‑M1/1‑2 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc   >  1:656866‑M1/1‑2 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc   >  2:825551‑M1/1‑2 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg    <  1:879024‑M1/150‑149 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg    <  1:538621‑M1/150‑149 (MQ=255)
                                                                                                                                                   aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtccc     <  2:495089‑M1/149‑148 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca  <  1:837093‑M1/151‑151 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca  <  1:304231‑M1/151‑151 (MQ=255)
                                                                                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc   >  1:355813‑M1/1‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                      
CGCTGGAGATTAATACGCGGTGGACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATCACCTGTACTATCCACACCGTCGACATGCTGGCTCGGCATTCTCATTATTTATAGATAGGCTGAAGTATAAAGGTGCTGTTTAGCACTACTTGCT  >  NC_000913/1392603‑1392901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: