| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925901 = | 62 (0.970) | 17 (0.270) +C |
12/296 | 7.5 | 24.8% | noncoding (71/88 nt) | serW | tRNA‑Ser |
| ? | NC_000913 | = 1097399 | 42 (0.650) | intergenic (+570/+166) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC > NC_000913/1097255‑1097488 | cACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTg < 1:23893/149‑1 (MQ=11) cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACt < 2:79026/150‑1 (MQ=32) tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGGTTGACtc > 1:725849/1‑150 (MQ=18) gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGTCTTCTCATCCCCCCGGTGTGTGTAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACtcg < 2:209410/150‑1 (MQ=18) gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACtcg < 1:311907/150‑1 (MQ=33) cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGAGAGGGGGGGGTTg > 2:111892/1‑144 (MQ=11) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt < 1:138661/151‑1 (MQ=33) gTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt < 1:475221/151‑1 (MQ=33) tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttc < 1:933301/150‑1 (MQ=33) cACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcg < 1:910360/150‑1 (MQ=33) gTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGAGAGGGGGGGGTTTACtcccccccc > 2:139135/1‑140 (MQ=11) gTCTCTCCAACTGGCTGTCGCCAGTTCTCGAACCCCGGTCTGGCCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgctcgc < 2:424189/151‑1 (MQ=255) aaCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTGTAAATCTGGCGGGGCGGGGGGGAATTAATCGCATCGCTAGccc > 2:612431/1‑145 (MQ=11) cTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGGTTGACTCGCTTCGCTCGCCCCGCggg > 1:340825/1‑149 (MQ=18) ggCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa < 1:388087/149‑1 (MQ=33) ggCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa < 1:581974/149‑1 (MQ=33) gTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGccc < 1:815772/149‑1 (MQ=33) cGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTTAGGGGGGGGTTTAATCCCCTCGCTCGCCCTCCGGGGAGCCCGcc > 2:27559/1‑149 (MQ=11) cAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCCTCGCTCGCCCTGCCGGCAGCCCCCTCAc > 1:599955/1‑150 (MQ=16) aGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGGTTTGATCCCCTCGCCCCCCCTCCGGGGAGCCCCCTcccgg > 2:793368/1‑147 (MQ=11) aGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGGTAGAGGGGGGTTGACTCCGTTTCCTTGCCCTGCGGGGAGCCCGCGCAc > 2:131979/1‑149 (MQ=11) aGTTGTCGAACCCCGGACGGTGCTTCTCCTCCCCCCGGTTTGTCTAATATACGAAACGAAAGCCCGTACTTCCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg < 2:213491/151‑1 (MQ=11) gTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc < 1:322510/151‑1 (MQ=33) gTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc < 2:946952/151‑1 (MQ=33) ttttgaacccccGTTCGGGCTTTCTCTTCCCCCCGGTTTTTGCAATATAGGAAAAAAAGGCCGTTCCTTCCGTACG‑GCCCTTCCTTTAAATAGGGCGG‑GGGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc < 2:143762/141‑1 (MQ=2) tGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCg < 1:388515/150‑1 (MQ=33) tGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CCGTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCg < 2:33989/150‑1 (MQ=18) tCGAACCCCGGTCGGGGCTTCTCCTCCCCCCGGTGTGTGCAATATACGAAACAAAAGCCCGTTCTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt < 2:608266/150‑1 (MQ=16) gAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCCGCCGGCGGCCCGCTCACTGCGt > 2:75712/1‑147 (MQ=16) aaCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTTACTCGCTTCGCCCGCCCTGCGGGCGGCCCGCTCCCTTCGTTCACg > 1:716523/1‑151 (MQ=255) aaCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg < 1:217394/151‑1 (MQ=33) aCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACgg < 2:98092/151‑1 (MQ=32) aCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGAATCGCCTCGCCCGCCCTGCGGGCAGCCCGCTCACCGCGTTCAccg > 1:603400/1‑149 (MQ=255) ccGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGGGGGGGGGAGTGACCCCCCTCCTGCGCCCTGCGGGCCACCCGCTCCCTGCCGTCACGGt > 1:740837/1‑149 (MQ=11) cGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCCGCGGGCAGCCCCCTCACTGCGTTCACGGt > 1:14042/1‑148 (MQ=14) gCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGAATCCCCTCGCTCGCCCCCCGGGGAGCCCCCTCACTGCGTTCACCGTCTGTCCa > 1:795697/1‑147 (MQ=11) cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTg < 1:146281/149‑1 (MQ=31) cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGt < 2:102620/150‑1 (MQ=31) cATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGAATTAACCGCCTCGCTCGCCCCGGCGGCAGCCCGCCCACTGCGCTCACGGTCCCTCCCACCGGCt > 1:424226/1‑148 (MQ=11) aaTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg < 2:14041/151‑1 (MQ=31) aaTATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCg < 2:752907/151‑1 (MQ=31) atatACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGGGAGGGGGGGATTGACTCGCTTCGCCCGCCCTGCGGGGAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCCGTTGTCGAAcccc > 1:929728/1‑149 (MQ=9) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTc < 2:484529/151‑1 (MQ=31) ataCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTc < 2:890491/151‑1 (MQ=31) | CACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTT‑CTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTC > NC_000913/1097255‑1097488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |