Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,377,068 Δ21 bp coding (333‑353/639 nt) sspA ← stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3377068 3377088 21 66 [1] [0] 65 sspA stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 33770671 (0.020)64 (0.980) 58/294 0.2 99.2% coding (354/639 nt) sspA stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog
?NC_000913 3377089 = 0 (0.000)coding (332/639 nt) sspA stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog

ACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGG  >  NC_000913/3376920‑3377217
                                                                                                                                                   |                                                                                                                                                      
aCGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTtgatg                                                                                                                                                     <  2:180370/151‑1 (MQ=255)
aCGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtac                                                                                                                                                     <  1:216944‑M1/151‑4 (MQ=255)
    cacaGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagt                                                                                                                                                 <  1:837380‑M1/151‑8 (MQ=255)
    cacaGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagt                                                                                                                                                 >  1:384717‑M1/1‑144 (MQ=255)
     acaGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtc                                                                                                                                                <  2:472328‑M1/151‑9 (MQ=255)
           gcGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttc                                                                                                                                          <  2:760490‑M1/151‑15 (MQ=255)
                  aaGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcg                                                                                                                                    >  1:319916‑M1/1‑130 (MQ=255)
                   aGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgat                                                                                                                                  <  1:115736‑M1/151‑23 (MQ=255)
                   aGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgat                                                                                                                                  >  2:999950‑M1/1‑129 (MQ=255)
                         cAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgt                                                                                                                            >  1:989629‑M1/1‑123 (MQ=255)
                           aTCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgta                                                                                                                           >  1:172040‑M1/1‑121 (MQ=255)
                             cGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtaca                                                                                                                         <  1:625947‑M1/150‑32 (MQ=255)
                                 cAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagac                                                                                                                      >  1:121816‑M1/1‑115 (MQ=255)
                                     cTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggcttt                                                                                                                >  2:508540‑M1/1‑111 (MQ=255)
                                        aaCTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcac                                                                                                             <  1:93703‑M1/151‑44 (MQ=255)
                                           tCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgc                                                                                                          >  1:871175‑M1/1‑105 (MQ=255)
                                             aTCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcg                                                                                                         >  2:312089‑M1/1‑103 (MQ=255)
                                                gCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagct                                                                                                     >  1:249856‑M1/1‑100 (MQ=255)
                                                 cTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagct                                                                                                     >  1:541745‑M1/1‑99 (MQ=255)
                                                   cAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctac                                                                                                   <  2:333007‑M1/150‑54 (MQ=255)
                                                   cAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagcta                                                                                                    <  2:893767‑M1/149‑53 (MQ=255)
                                                        aGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggta                                                                                             <  2:820176‑M1/151‑60 (MQ=255)
                                                         gTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaa                                                                                            <  2:566868‑M1/151‑61 (MQ=255)
                                                           aCGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaac                                                                                          <  1:402341‑M1/151‑63 (MQ=255)
                                                               cTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggc                                                                                      >  1:1007667‑M1/1‑85 (MQ=255)
                                                                   tGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatc                                                                                   >  2:455718‑M1/1‑81 (MQ=255)
                                                                     aCCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagt                                                                                >  1:350228‑M1/1‑79 (MQ=255)
                                                                         aaGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcg                                                                            <  2:723923‑M1/151‑77 (MQ=255)
                                                                                gcgcAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgg                                                                     <  2:897671‑M1/151‑84 (MQ=255)
                                                                                 cgcAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcggg                                                                    >  2:286117‑M1/1‑67 (MQ=255)
                                                                                   cAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaa                                                                  <  1:841692‑M1/151‑87 (MQ=255)
                                                                                     aTCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaa                                                                 >  1:427308‑M1/1‑63 (MQ=255)
                                                                                        gCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgct                                                             <  1:850318‑M1/151‑92 (MQ=255)
                                                                                           agcagTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcat                                                          <  1:79085‑M1/151‑95 (MQ=255)
                                                                                           agcagTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcat                                                          <  2:341358‑M1/151‑95 (MQ=255)
                                                                                            gcagTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcat                                                          <  1:945609‑M1/150‑95 (MQ=255)
                                                                                               gTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccag                                                      <  2:712223‑M1/151‑99 (MQ=255)
                                                                                                    tcGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagata                                                   <  1:802214‑M1/149‑102 (MQ=255)
                                                                                                      gcgcAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattcc                                               >  2:386186‑M1/1‑46 (MQ=255)
                                                                                                        gcAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccat                                             <  1:956555‑M1/151‑108 (MQ=255)
                                                                                                        gcAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgcacctccagatattcca                                              >  1:539582‑M1/1‑44 (MQ=255)
                                                                                                         cAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccata                                            <  1:247796‑M1/151‑109 (MQ=255)
                                                                                                             tGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatg                                         <  1:356930‑M1/150‑112 (MQ=255)
                                                                                                             tGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatg                                         <  1:847941‑M1/150‑112 (MQ=255)
                                                                                                             tGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataat                                          >  1:298926‑M1/1‑39 (MQ=255)
                                                                                                               cTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgat                                       <  1:748332‑M1/150‑114 (MQ=255)
                                                                                                                ttACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatg                                      >  2:746417‑M1/1‑36 (MQ=255)
                                                                                                                 tACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgc                                     <  1:228002‑M1/150‑116 (MQ=255)
                                                                                                                 tACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgc                                     <  2:569444‑M1/150‑116 (MQ=255)
                                                                                                                 tACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgc                                     <  2:387046‑M1/150‑116 (MQ=255)
                                                                                                                 tACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatg                                      <  1:143654‑M1/149‑115 (MQ=255)
                                                                                                                 tACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatg                                      <  2:447195‑M1/149‑115 (MQ=255)
                                                                                                                  aCGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcg                                    >  1:994089‑M1/1‑34 (MQ=255)
                                                                                                                        ggCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcc                             >  2:1009334‑M1/1‑28 (MQ=255)
                                                                                                                        ggCATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcc                             <  1:961528‑M1/151‑124 (MQ=255)
                                                                                                                          cATCTGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattccca                           <  2:339777‑M1/151‑126 (MQ=255)
                                                                                                                              tGCTTCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccccagg                       >  2:256550‑M1/1‑22 (MQ=255)
                                                                                                                                  tCAGAAGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtc                    >  1:282572‑M1/1‑18 (MQ=255)
                                                                                                                                      aaGCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctc               <  1:528613‑M1/151‑138 (MQ=255)
                                                                                                                                        gCTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctcac             >  1:242208‑M1/1‑12 (MQ=255)
                                                                                                                                         cTGAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctca              >  1:644591‑M1/1‑11 (MQ=255)
                                                                                                                                           gAACCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctcacg            <  1:184841‑M1/149‑141 (MQ=255)
                                                                                                                                             aCCGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctcacgatcc        >  1:522892‑M1/1‑7 (MQ=255)
                                                                                                                                              ccGTTGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctcacgatcca       <  1:133952‑M1/151‑146 (MQ=255)
                                                                                                                                                 ttGtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctcacgatccacc     >  1:964911‑M1/1‑3 (MQ=255)
                                                                                                                                                   gtaccagtctttttcgatgcgatgcatgtacagacggctttcaccgcgagctaccgggtaaacaggcatcagtggcggatgcgggaaacgctcatccagatattccataatgatgcgagattcccacagggtcagctcacgatccaccagg  <  1:508554‑M1/151‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                      
ACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCGTTGATGATGGTGTTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGG  >  NC_000913/3376920‑3377217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: