Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4350CT42.9% 69.2 / 29.2 56intergenic (‑179/‑28)ttdR/ttdAtranscriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base C (5/27);  new base T (24/0);  total (29/27)
Fisher's exact test for biased strand distribution p-value = 2.79e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAA  >  NC_000913/3206295‑3206584
                                                                                                                                            |                                                                                                                                                      
cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATa                                                                                                                                              <  2:621631/151‑1 (MQ=255)
    aaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCAGACaaaaaaaa                                                                                                                                           >  2:287184/1‑145 (MQ=255)
       cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAcaaaaacaaaaa                                                                                                                                        >  2:797568/1‑150 (MQ=255)
        aTTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACaaaaa                                                                                                                                        >  1:107162/1‑149 (MQ=255)
           gCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGa                                                                                                                                   <  1:966878/151‑1 (MQ=255)
                tCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTg                                                                                                                              <  1:793252/150‑1 (MQ=255)
                   cTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGTTGGCat                                                                                                                          >  2:57032/1‑151 (MQ=255)
                      ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTTAAACAAATACAAAAAATGGAGTTGCCatg                                                                                                                         >  2:226478/1‑149 (MQ=255)
                          ggCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCACACAAAAAAAAAAAATGGAGGTGGCATGATGAg                                                                                                                    >  1:466648/1‑150 (MQ=255)
                             gcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGGCATGATGAGCg                                                                                                                  >  1:325885/1‑149 (MQ=255)
                              cAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAAAAAAAAAAAAAACGGAGGTTGCCTGATGAGCgga                                                                                                                >  1:862138/1‑148 (MQ=255)
                                      attcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAg                                                                                                       <  1:862877/151‑1 (MQ=255)
                                           tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCaa                                                                                                    <  2:912022/149‑1 (MQ=255)
                                                tCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCATACAAAAAAAAAAAAAGGAGTTGGCCTGATGGGGGaaaagaaaaagaaa                                                                                                    >  2:803710/1‑133 (MQ=255)
                                                tCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCa                                                                                              <  2:633076/150‑1 (MQ=255)
                                                   cgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTCCAGACCAATAAAAAAAATGGGGGTGCCGTGATGAGCGGAAGGAATAAACAACAGGCAGt                                                                                            >  2:310730/1‑149 (MQ=255)
                                                    gTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGaa                                                                                         <  2:96961/151‑1 (MQ=255)
                                                       gATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGACAAAAACAAAAACTGGAGTTGCCATGATGAGCGAAAATAATAAACAACAAGccggggat                                                                                        >  1:58474/1‑142 (MQ=255)
                                                           cACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGtt                                                                                   <  1:1005691/150‑1 (MQ=255)
                                                              gAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACa                                                                               <  1:287855/151‑1 (MQ=255)
                                                                aCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGCCATGATGAGCGAAAGTAATAAACAAAAGGCAGTGAATAAATTGa                                                                                 >  1:318584/1‑147 (MQ=255)
                                                                    ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATAAAAAAAATGGAGTTGCCATGATGAGCGAAAGGAATAAACAACAGGCAGGGAATAAATTGACAgagaat                                                                         >  1:313124/1‑149 (MQ=255)
                                                                      aaTTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTCCCGACAAATAAAAAAAATGGAGGTGCCATGATGAGCGAAAGAAAAAAAAAAAAAGGAGTGAAAAAAATGACAGAGAtt                                                                         >  1:457038/1‑149 (MQ=255)
                                                                         tACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGCGGAAGGAAAAAACAACAGGCAGGGAATAAGTTGACAGAGATTGTCg                                                                     >  1:25281/1‑150 (MQ=255)
                                                                              atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAAc                                                                <  2:520709/150‑1 (MQ=255)
                                                                               ttCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAAAAAAAAAAATGGAGTTGTCCTGGTGAGCGAAAAAAAAAAAAAACAGGAAGTGAATAAAATGACAGAGGTTTTCGCtca                                                                 >  2:913659/1‑146 (MQ=255)
                                                                               ttCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGACAAAAAAAAAAAATGGAGGTGGCATGATTAGCGGAAGTAAAAAACAAAAAGCAGGGAATAAATTGAAAGGGGTTGTGGGTaa                                                                 >  2:1016804/1‑148 (MQ=255)
                                                                                tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACtt                                                              <  1:634671/150‑1 (MQ=255)
                                                                                tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACtt                                                              <  1:803609/150‑1 (MQ=255)
                                                                                tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACtt                                                              <  1:404987/150‑1 (MQ=255)
                                                                                 cACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAACTGGGGGTGCCATGATGAGGGGAAGGAATAAAAAACAGGCAGTGAATAAATTGGAAGAGATTGTCGCTAACttt                                                             >  1:892251/1‑150 (MQ=255)
                                                                                 cACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGCGAAAAAAATAAACAAAAGGCAGTGAATAAATTGACAGAGATTGTTGCTAACttt                                                             >  1:391/1‑150 (MQ=255)
                                                                                  aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGAGAATTTTTTCAGACAAAAAAAAAAAATGGAGGTGCCATGATGAGCGAAAGAAATAAACAACAAGCAGTGAATAAATTGACAGAGATTGTCGCCAAAttt                                                             >  1:565006/1‑149 (MQ=255)
                                                                                   cGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAACTGGAGTTGCCCTGATGGGCGAAAGAAAAAAACAACAAGCAGGGAAAAAGTTGAAAGAGATTGTCGCTAACttt                                                             >  1:511099/1‑148 (MQ=255)
                                                                                   cGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTAcc                                                          <  2:888298/151‑1 (MQ=255)
                                                                                    ggTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCg                                                         <  2:373396/151‑1 (MQ=255)
                                                                                     gTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGc                                                        <  1:541741/151‑1 (MQ=255)
                                                                                         cAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAAAAAAAAAAATGGAGGTGTCATGGTGAGTGGAAGTAAAAAACAAAAAGGAGTGAATAAAATGAGAGAGATTGTCGCTAACCTTTCCGcc                                                       >  2:377199/1‑148 (MQ=255)
                                                                                          aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGCCATGATGAGCGAAAGAAATAAACAACAGGCAGTGAATAAATTGACAGAGATTGTCGCTAACTTTACCGcc                                                       >  1:694567/1‑147 (MQ=255)
                                                                                            aaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGAtt                                                 <  1:418233/151‑1 (MQ=255)
                                                                                             aaaTATAAAACCACATTTTTAGTGGTATTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGAAAGAGATTGTCGCTAACTTTACCGCCATGAttt                                                <  2:281924/151‑1 (MQ=255)
                                                                                             aaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAAAAATACAAAAACTGGAGTTTCCCTGGTGAGGGGAAGTAATAAACAAAAAGCAGTGAATAAATTGACAGAGATTGTCGCTAACTTTACCGCCATGAttt                                                >  2:615608/1‑151 (MQ=255)
                                                                                                 ataAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAACAAAAACAAAAAATGGAGGTGGCATGATGAGCGAAAAGAAAAAACAAAAAGCAGTGAATAAATTGACAGAGATTTTCGCTAACTTTAACGCCAAGATTTCt                                              >  1:261897/1‑149 (MQ=255)
                                                                                                    aaaCCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTACCTTTACCGCCATGATTTCTACCCg                                         <  1:659444/151‑1 (MQ=255)
                                                                                                        cacaTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATg                                     <  2:512855/151‑1 (MQ=255)
                                                                                                         acaTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGACAAATACAAAAAATGGAGTTGGCATGATGAGGGGAAGGAAAAAGCAAAAAGCAGTGAATAAATTGACAGAGATTGTCGCTAACTTTACCGCCCTGATTTCTACCCCAATGc                                    >  2:361058/1‑151 (MQ=255)
                                                                                                         acaTTTTTAGTGGTAGTTTGTGGCGGATAAATTTTCCCCGCAAATAAAAAAACTGGGGGTGTGCTGGGGGGCCTGAGGAATAAGCAACAGGAAATGAATAAGCTTAGAAAGATTGTTCCGATCTTTTCCGCCCAGCATTCTACCCgcaagc                                    >  2:237685/1‑146 (MQ=255)
                                                                                                            tttttAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAAAAAAAAACAGGCAGTAAATAAGTTGAAAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCt                                  <  2:824433/150‑1 (MQ=255)
                                                                                                                         tttGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGAGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGtggtgg                     <  2:264593/150‑1 (MQ=255)
                                                                                                                             tgGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATa                  <  2:376448/149‑1 (MQ=255)
                                                                                                                               gCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAGCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACt              <  2:107158/151‑1 (MQ=255)
                                                                                                                                     aaTTTTTCCAGACAAATACAAAACCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa          <  1:226484/149‑1 (MQ=255)
                                                                                                                                     aaTTTTTCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGCCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa          <  2:958199/149‑1 (MQ=255)
                                                                                                                                      aTTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAAc         >  1:593087/1‑149 (MQ=255)
                                                                                                                                          ttCCAGAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTa    <  1:514472/150‑1 (MQ=255)
                                                                                                                                           tCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTa    >  2:655573/1‑149 (MQ=255)
                                                                                                                                            ccAGACAAATACAAAAACTGGATTTGCCATGATGAGCGAAAGTAAAAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTaaa  <  2:451294/150‑1 (MQ=255)
                                                                                                                                            ccAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTaa   >  2:585401/1‑149 (MQ=255)
                                                                                                                                            |                                                                                                                                                      
CGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAA  >  NC_000913/3206295‑3206584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: