Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,177,7480CA41.4% 80.5 / 30.7 58E55* (GAG→TAG) nudFADP‑ribose pyrophosphatase
Reads supporting (aligned to +/- strand):  ref base C (30/4);  new base A (0/24);  total (30/28)
Fisher's exact test for biased strand distribution p-value = 1.60e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGG  >  NC_000913/3177601‑3177893
                                                                                                                                                    |                                                                                                                                                 
tttCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCaa                                                                                                                                                 >  2:882620/1‑150 (MQ=255)
 ttCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCaa                                                                                                                                                 <  1:436955/149‑1 (MQ=255)
    aCCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAAtt                                                                                                                                            >  2:327022/1‑151 (MQ=255)
           tCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCccgcc                                                                                                                                     >  2:995628/1‑151 (MQ=255)
                 atcCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCAcc                                                                                                                                >  1:337624/1‑150 (MQ=255)
                     cGGGAACCATATCCCGTAGCCAAGGGGGTTCGCTGGGTTCTTACGCCGCCACCCGAATCTGCTCAATCGGCACAAATCAAACACGCGCTTGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCCCCCTCAAAAATTTCCCGCCCCCCCTc                                                                                                                              >  1:611876/1‑148 (MQ=255)
                        cAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACt                                                                                                                        >  1:916967/1‑151 (MQ=255)
                                   aGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGt                                                                                                             >  2:686243/1‑151 (MQ=255)
                                    gTAGCCAGGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCCCGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGtt                                                                                                            <  2:410614/151‑1 (MQ=255)
                                       gCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGa                                                                                                          >  1:522333/1‑150 (MQ=255)
                                        ccAGGGGGTTGCGCGGGTGCCGTCCGCGGCAACCCGACTCTGCTCAACCAGCACACCTACATCACCCACTGGGTCAAAGGGT‑AGCAAGCCTGCGGCGTGACCGCGCTAAAAATTTTCCCGCCGCACCTCATGACTCATTTGCCCGtt                                                                                                            <  1:282717/147‑1 (MQ=255)
                                                tttCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCACCACGCACGGGGTAAAAGGGT‑AGCAAGCCTGGGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGAt                                                                                                 <  2:754207/150‑1 (MQ=255)
                                                 ttCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATg                                                                                                >  2:95953/1‑150 (MQ=255)
                                                 tccGCTGGTGTCAGACGCGGAAATCCGAATCTGCTCAATCAGCACAACTTCACCCCCCACTGGGTCAAGGGGT‑AGCAAGACTGCGGCTTGCCCGCGCTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATg                                                                                                <  1:149946/148‑1 (MQ=255)
                                                  tCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGa                                                                                               <  1:464520/150‑1 (MQ=255)
                                                      tGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGaa                                                                                           >  2:247130/1‑150 (MQ=255)
                                                       ggTGTCGTACGCGGAAATCCGAATCTGCTCAACCAGCACAACTTCATCACGCACGGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGaaa                                                                                          <  1:874550/150‑1 (MQ=255)
                                                             gtccgcgGCAATCCAAATCTCCACAATCAGCACAACTTCATCCCCCACTGGTTCAAGGGGT‑AGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATaa                                                                                   <  2:860756/148‑1 (MQ=255)
                                                                cgcgGCAATCCGAATCTGCTCAATCAGCACAACTGCACCACGCACTGGGTCAAAGGGT‑AGCAAGCCTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCtat                                                                                     <  1:304273/146‑1 (MQ=255)
                                                                cgcgGCAATCCGAATCTGCTCAAACAGCACAACTTCACCCCGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAg                                                                                 <  1:246128/150‑1 (MQ=255)
                                                                     cAACCCGACCCTGCTCAATCACCACAACTTCATCCCGCA‑TTGGTTAAAGGTTCCAAAAGTCGGCGGCGTGCCCCCGGCAAAAAATCACCCGCCGCACCTCATGACGCATTTGCCCGTTGAATAGACGATGACGAAATCTATaa                                                                                   <  1:572392/143‑1 (MQ=255)
                                                                       aTCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATg                                                                         >  2:665338/1‑151 (MQ=255)
                                                                           gAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGaaa                                                                      >  1:615137/1‑150 (MQ=255)
                                                                           gAATCTGCTCAACCAGCACACCTCCACCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTAAAAATTTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATg                                                                         <  1:338154/147‑1 (MQ=255)
                                                                            aatttccTCAATCAGCACAACTTCATCACCCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGaaaaa                                                                    <  2:881828/145‑1 (MQ=255)
                                                                                tGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGc                                                                >  2:174954/1‑151 (MQ=255)
                                                                                tGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGAAGATGACGAAATCTATAAAGATCTAATGAAAAAAAg                                                                 >  1:333317/1‑150 (MQ=255)
                                                                                 gCTCAATCAGCACAACTTCACCACGCACTGGGTAAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAg                                                                 <  2:877062/149‑1 (MQ=255)
                                                                                  cccAATCAGCACAACTTCACCCCGCACTGGGTAAAGGGGT‑AGCAAGACCGCGGCGTGACCGCGCAAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCcg                                                              <  2:610139/149‑1 (MQ=255)
                                                                                  cccAACCAGCACATCTTCATCCCCCACTGGGTAAAAGGGT‑AGCAAGACTGCGGCGTGCCCCGGCAAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGaaaaaaa                                                                  <  1:644921/145‑1 (MQ=255)
                                                                                  cTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCcg                                                              >  1:306339/1‑151 (MQ=255)
                                                                                   tCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCcgc                                                             >  1:222432/1‑151 (MQ=255)
                                                                                       tCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGAt                                                          >  2:764941/1‑150 (MQ=255)
                                                                                        cAGCACAACTTCATCCCGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGAt                                                          <  2:520835/149‑1 (MQ=255)
                                                                                         aGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATaa                                                        >  2:804468/1‑150 (MQ=255)
                                                                                           cacaACTTCACCCCGCACGGGGTCAAAGGGT‑AGAAAGACTGCGGCGTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATaaa                                                       <  1:217564/149‑1 (MQ=255)
                                                                                            acaACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAgtg                                                    >  1:554654/1‑151 (MQ=255)
                                                                                             caACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAgtgt                                                   >  1:626084/1‑151 (MQ=255)
                                                                                               aCTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGttt                                                 >  1:108012/1‑151 (MQ=255)
                                                                                                     tcaCGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTg                                           >  2:259346/1‑151 (MQ=255)
                                                                                                           aCTGGGTCAAAGGGT‑AGCAAGACTGCGGCTTGACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCaataa                                     <  2:782170/151‑1 (MQ=255)
                                                                                                           aCTGGGTAAAGGGGT‑AGCAAGACTGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCaataa                                     <  1:798552/151‑1 (MQ=255)
                                                                                                              gggTCAAAGGGT‑AGCAAGACTGCGGGGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCaataa                                     <  2:380322/148‑1 (MQ=255)
                                                                                                              gggTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAAttt                                  >  1:298292/1‑151 (MQ=255)
                                                                                                                   aaaGGGT‑AGCAAGCCTGCGGCGTGACCGCGCTCAAAATTTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACa                             <  2:207438/151‑1 (MQ=255)
                                                                                                                    aaGGGT‑AGAAGGCCTGCGGCGTGCCCGCGCTAAAAAATTCCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACAt                            <  2:559259/151‑1 (MQ=255)
                                                                                                                      gggT‑AGCAAGATTGCGGAGTGACCGCATTAAAAAATTCACCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAACAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCg                          <  1:189379/151‑1 (MQ=255)
                                                                                                                       ggT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGt                         >  2:131733/1‑151 (MQ=255)
                                                                                                                         t‑AGAAAGACGGCGGCGGGCCCCCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGtt                        <  1:851186/150‑1 (MQ=255)
                                                                                                                            gCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGttttt                     >  1:971262/1‑151 (MQ=255)
                                                                                                                              aaGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTATACATCGTTTTTGc                   >  2:874378/1‑151 (MQ=255)
                                                                                                                              aaGACGGCGGCGTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGttttt                     <  1:887210/149‑1 (MQ=255)
                                                                                                                               aggcTGCGGCGTAACCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGcc                  <  2:638133/148‑1 (MQ=255)
                                                                                                                                   tGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAAt              >  1:372085/1‑151 (MQ=255)
                                                                                                                                   tGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAAt              >  2:736385/1‑151 (MQ=255)
                                                                                                                                    gcggcgTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAAt              >  2:381475/1‑150 (MQ=255)
                                                                                                                                      ggcgTGCCCGCGCTAAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTa           <  2:234303/151‑1 (MQ=255)
                                                                                                                                               gcgcTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAgg  >  2:152261/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
TTTCACCCTCTTCAATCATCCCGGCAACCATCTCCAGTAGCCAAGGGGTTTCGCTGGTGTCGTACGCGGCAATCCGAATCTGCTCAATCAGCACAACTTCATCACGCACTGGGTCAAAGGGT‑AGCAAGACTGCGGCGTGACCGCGCTCAAAAATTTCCCGCCGCACCTCATGACTCATTTGCCCGTTGAATAGACGATGACGAAATCTATAAAGATCTAATGAAAAAAAGCCGCGATAAAGTGTTTCTCGTGCAATAATTTCTACATCGTTTTTGCCAAATGTAACGGGCAGG  >  NC_000913/3177601‑3177893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑