| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 45.8% | 99.9 / 35.0 | 72 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (35/4); new base C (0/33); total (35/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.93e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCA > NC_000913/2001770‑2002067 | gCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑cc < 2:7123/151‑1 (MQ=255)gCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTAACGGCCTGATTATCCGTTTCTGCAAGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGaaaaaaa < 1:587184/149‑1 (MQ=255) gTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCccg < 1:400280/151‑1 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCccgcc > 1:639273/1‑151 (MQ=255) taGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCccgccg > 2:544877/1‑151 (MQ=255) ttCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCgggg > 1:381125/1‑151 (MQ=255) cACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGa > 2:451844/1‑150 (MQ=255) aaaaaCAGCCCTGCGTTATATGATTTATGGGCATGATTATCCGTTTCTGCAGGTTTTTA‑AATCGGACGATTGGGGGGTAAAATGGGGGTTTATTGGGGGG‑TTAAA‑GGAAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAg < 2:721009/146‑1 (MQ=255) aaaccaccccTGCTTTATTTGGGTTATCGGCATGATTATCCGTTTCTGCAGGTTTTTT‑AATCGGACGATTAGTGGGTAAAAGGGGGGTTTTTTTGGGGG‑TTACA‑GATAATTCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACg < 1:99413/144‑1 (MQ=255) aaaCACCCGTGGTTTATATGAGTTATCGGCATAATTATCCGTTTCTGCGGGGTTTTA‑AATCGGACGATTGGTGGGGGAATTGAGGGGTTTTTGGGGGG‑TTACA‑GGTAAATCCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCAc < 2:525268/149‑1 (MQ=255) cccTGCGTTATATGATTTAGCGGCATGTTTTTCCGTTTCTGGGGGTTTTTT‑AATCGGACGATTGGGGGGTAAAAGGAGGGTTTTTTTGGGGG‑TTACA‑GGTAAATCCCGGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTg < 1:334622/150‑1 (MQ=255) cctggtttATATGAGTTACCGGCAGGTTTACCCGTTTCTGGGGGTTTTTT‑AATCGGACGATTGGTGGGTAAAAGGGGGGGTTTTTTGGGGT‑TAAGA‑GGAAAATCCCGGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGAc < 1:399763/145‑1 (MQ=255) tGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa > 1:474799/1‑150 (MQ=255) tGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa > 1:641581/1‑150 (MQ=255) tGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa > 1:329302/1‑150 (MQ=255) ttATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg > 1:248686/1‑151 (MQ=255) ttATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg > 2:248358/1‑151 (MQ=255) ttATATGAGTTACCGGAATGATTATCCTTTTCGGCGGGTTTTTT‑AACCGGAGGATTAGGGGGGGAAATGGGGGTTTATTGGGGGT‑TTACA‑GGTAAATCCAGGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa < 2:849180/146‑1 (MQ=255) atatGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg > 1:886348/1‑151 (MQ=255) aGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑ATACA‑GGCAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGCGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt > 2:163252/1‑150 (MQ=255) ttATCGGCATGATTATCCTTTTCGGCGGGGTTTTT‑AAGCGGACGTTTAGTGGGTGAAA‑GGGGGGTTTTTTGGGGGTTTACA‑GGTAAATTCCAGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTa < 2:121159/149‑1 (MQ=255) aTCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGtt > 1:924231/1‑151 (MQ=255) ggCATGTTTATCCGTTTCTGCGGGTTTTTT‑AACCGGACGATTAGGGGGTAAAATGGGGGTTTTTTGGGGGG‑TTACA‑GTTAAATTCCAGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg < 2:847462/149‑1 (MQ=255) ggCATGATTTTCCTTTTCTGCGGGGTTTTT‑AATCGGACGATTGGGGGGTAAAAGGGGGGTTTATTTGGGGT‑TAACA‑GGTAAATTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTg < 1:537812/149‑1 (MQ=255) tGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGa > 2:769578/1‑150 (MQ=255) ttctCCGTTTCTGAAGGTTTTTT‑AATCGGACGATTAGTGGATAAAATGAGGGTTTTTTTGGGGT‑TGAAG‑GGTAAGTTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg < 2:299249/146‑1 (MQ=255) ttATCCTTTTCTGCGGGTTTTTA‑AACCGGACGATTGGGGGGTAAAATGAGGGTTTA‑TTGGGGG‑TTAAAGGGTAATTTCAAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCgg < 2:650846/146‑1 (MQ=255) ttATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg > 1:547821/1‑151 (MQ=255) ttATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg > 1:260163/1‑151 (MQ=255) ttACCCTTTTCGGCGGGGTTTTT‑AATCGGACGATTGGGGGGTAAAATGGGGGTTTTTTTGGGGT‑TAACA‑GAAAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg < 1:441995/145‑1 (MQ=255) aTCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggc > 2:713774/1‑151 (MQ=255) aTCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAAGGAGGGTTTTTTTGGGGG‑TTACA‑GGAAAATTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcgg < 1:4220/150‑1 (MQ=255) aTCCGTTGCGGGAGTGTTTTG‑AAGAGCAGGATTGGTGGGTAAAAGGAGGGTTTTTTGGGGGT‑TTACA‑GCTAAATCCCCCGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGAt < 2:776548/146‑1 (MQ=255) cGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGt > 1:300022/1‑150 (MQ=255) tgggtaGGGTTTTG‑AATGGTCTGTTTAGGGGGTAAAACG‑GGGGTTTTTTTGGGG‑TTAAA‑ATTGAAATCCCGGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg < 1:966766/137‑1 (MQ=255) tcggcggggTTTTA‑AACCGGGGGATGGGGGGGGGAAAGGGGGGTTTATTTGGGGG‑TGACA‑GGAAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc < 2:498467/144‑1 (MQ=255) cTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGc > 2:457132/1‑151 (MQ=255) gcgggTTTTTAAATCGGACGATTGGGGGGTAAAAGGGGGGTTTTTTTGGGGG‑TAACA‑GGTAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCt < 1:609853/149‑1 (MQ=255) cAGGGTTTTT‑AATCGGACGTTTAGTGGGTGAAAGGGGGGTTTTTTTGGGGG‑TTACA‑GGTAAATTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt < 1:317645/151‑1 (MQ=255) cAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt > 2:367708/1‑151 (MQ=255) aGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt > 2:830087/1‑150 (MQ=255) tttttt‑AATCGGACTTTTAGTGGGTAAAATGAGGGTTTTTTTGGGGT‑TTAGA‑GATAATTTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATc < 1:599426/149‑1 (MQ=255) ttttt‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg > 2:821215/1‑151 (MQ=255) ttttt‑AACCGGACGATTGGGGGGTGAAAGGGGGGTTTTTTTGGGGG‑TTAAA‑GGAAAATTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt < 1:161038/146‑1 (MQ=255) tttt‑AATCGGACGATTGGTGGGTAAAAGGGGGGTTTTTTTGGGGG‑TTACA‑GTAAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg < 1:843248/150‑1 (MQ=38) ttt‑AATGGGACGATTAGTGGGTAAAATGAGGGGTTATTGGGGGG‑TTACA‑GGTAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCgg < 2:299360/150‑1 (MQ=39) ttt‑AATCGGACGATTAGGGGGTGAAAGGAGGGTTTATTGGGGGG‑TTACA‑GGTAAATTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCgg < 2:757256/150‑1 (MQ=39) aagcGGACGATTAGGGGGTAAAAGGGGGGTTTATTGGGGGT‑TTACA‑GATAAATTCCAGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt < 2:678139/147‑1 (MQ=37) aTCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc > 1:627950/1‑151 (MQ=255) tCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc > 2:422457/1‑150 (MQ=255) ggACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaa > 1:180947/1‑150 (MQ=255) ggACGATTAGGGGGTAAAATGAGGGTTTATTGGGGGG‑TTACA‑GGTAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaa < 2:404925/150‑1 (MQ=38) cGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt > 1:575836/1‑151 (MQ=255) ttAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtg > 1:542941/1‑151 (MQ=255) ttAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtg > 2:550294/1‑151 (MQ=255) gTGGGTAAAAGGGGGGTTTTTTGGGGGG‑TTACA‑GGTAAATTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 2:160128/149‑1 (MQ=37) aaaggggggtTTATTGGGGGG‑TTACA‑GGAAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCa < 2:549919/143‑1 (MQ=37) aaaTGGGGGGTTTTTTGGGGG‑TTACA‑GATAAATTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCa < 1:137392/149‑1 (MQ=37) aaTGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAAt > 2:785939/1‑150 (MQ=255) ttttttGGGGT‑TTAGA‑TAAAAATTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCa < 1:161911/146‑1 (MQ=25) ttttttGGGGT‑TTAAA‑GATAAATCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa < 1:431480/147‑1 (MQ=25) tATTGGGGGG‑TTAAA‑GGTAAATTCCGGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa < 2:71035/149‑1 (MQ=255) ggggg‑TTAAA‑GGTAAA‑TCCAGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCaa < 2:639284/149‑1 (MQ=37) gggg‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACtt > 2:318873/1‑151 (MQ=255) ggg‑TTACA‑GGTAAATCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:927969/151‑1 (MQ=255) g‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 2:559404/1‑150 (MQ=255) ttACG‑GGAAAATTCCGGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt < 2:686138/149‑1 (MQ=37) aCA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc > 2:182199/1‑151 (MQ=255) cA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGcc > 2:122775/1‑151 (MQ=255) aTTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa > 1:763056/1‑149 (MQ=255) ccAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 2:945109/1‑151 (MQ=255) ccAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc < 2:919108/151‑1 (MQ=255) gAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCAt > 2:131376/1‑151 (MQ=255) aaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa < 2:743408/151‑1 (MQ=255) aaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa < 1:959238/151‑1 (MQ=255) a‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa > 2:382728/1‑150 (MQ=255) | GCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTT‑AATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACA‑GGTAAATTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCA > NC_000913/2001770‑2002067 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |