Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,538,1090AC44.6% 95.1 / 16.3 57G219G (GGT→GGG) nanMN‑acetylneuraminic acid mutarotase
Reads supporting (aligned to +/- strand):  ref base A (28/3);  new base C (0/25);  total (28/29)
Fisher's exact test for biased strand distribution p-value = 1.18e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGAT  >  NC_000913/4537960‑4538255
                                                                                                                                                       |                                                                                                                                                  
aTCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCAc                                                                                                                                                   >  2:317616/1‑151 (MQ=255)
  ccccGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCAcc                                                                                                                                                  <  1:923108/150‑1 (MQ=255)
    ccGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCttt                                                                                                                                               >  1:868568/1‑151 (MQ=255)
             cGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAAc                                                                                                                                      <  2:324893/151‑1 (MQ=255)
                 aGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAAccgcc                                                                                                                                  >  1:469937/1‑151 (MQ=255)
                    tACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACcgccgc                                                                                                                                >  1:436219/1‑150 (MQ=255)
                       gCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCAcc                                                                                                                             >  2:850403/1‑150 (MQ=255)
                                      gaCGGGAGCAAGCTTATTCCATTTTAAATTATTCCCGGTAAAATCAATTTCAAATACGGCACCCGTCCGCAATCCTGTTTT‑GGCTTCG‑CCATTAATAAGCCAGTTTTTATCCCCTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCa                                                                                                              <  2:403161/150‑1 (MQ=255)
                                      gaCGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTAcc                                                                                                               >  1:277904/1‑149 (MQ=255)
                                               aaGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCg                                                                                                    >  2:962197/1‑151 (MQ=255)
                                                   ttATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGcc                                                                                                  >  2:210278/1‑149 (MQ=255)
                                                        ccATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTa                                                                                            >  2:380409/1‑150 (MQ=255)
                                                               aatttattcCCGGTAAAATCAATTTAAAATCCGGCACCCGTTCGAATCCCTGTTTT‑GGTTTCC‑CCATTAATAAGCCAGTTTTTATCCCTTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCa                                                                                      <  2:830050/146‑1 (MQ=255)
                                                               aaaTTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCAtt                                                                                    >  1:233832/1‑151 (MQ=255)
                                                                aaTTATTCCCGGTAAAATAAATTTAAAATACGCCATCCGTTC‑CAAACCCGGTTTGGGCTCCG‑CAATTAAAAAGCCAGTTTTTATCCCTTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTg                                                                                   <  2:634387/151‑1 (MQ=255)
                                                                    attaCCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCtgt                                                                               >  2:901099/1‑151 (MQ=255)
                                                                     ttcccGGTAAAATCAAGTTCAAATCCGGCATCCGTTCGCAACCCTGTTTG‑GGCTTCC‑CCATTAAAAAGCCAGGTTTTACCCCCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCtgt                                                                               <  2:441449/147‑1 (MQ=255)
                                                                     ttaCGGGTGAAATCAAGTACAAATACGGCATCCGTCCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGTTTTTATCCCTTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCtgt                                                                               <  2:41672/150‑1 (MQ=255)
                                                                      taCCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTgtgt                                                                             >  2:682280/1‑151 (MQ=255)
                                                                      taCCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTgtgt                                                                             >  2:826676/1‑151 (MQ=255)
                                                                        cgggTAAAATCAATTTAAAATACGGCATCCGTTCGCAATCCTGTTTG‑GGCTTCG‑CCATAAATAAGCCAGTTTTTATCCCCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTg                                                                           <  2:485237/149‑1 (MQ=255)
                                                                        ccGGTAAAATAAATTTAAAATCCGGCATCCGTTCGAAATCCTGGTTT‑GGTTTCC‑CAATTAATAAGCCAGTTTTTATCCCCTTTATTCAAAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGtt                                                                            <  2:432405/150‑1 (MQ=255)
                                                                              aaaTCAAGTAAAAATCCGTCATCCTTTCGAAATCCTGGTTT‑GGCTCCG‑CCATTAAAAAGCCAGTTTTTATCCCCTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGAt                                                                     <  2:771258/151‑1 (MQ=255)
                                                                                aTCAAGTTAAAATACGGCATCCTTTCGCAATCCTGGTTT‑GGCTTCA‑CAATTAATAACCCAGGTTTTATCCCCTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCa                                                                   <  2:24989/151‑1 (MQ=255)
                                                                                   aaGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCaa                                                                  >  2:546083/1‑149 (MQ=255)
                                                                                   aaGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCaa                                                                  >  2:509669/1‑149 (MQ=255)
                                                                                         aaaTCCGGCTTCCGTTCCCAACCTTGTTTT‑GGCTTCG‑CAATAAATAAGCAAGTTTTTACCCCTTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGacaa                                                           <  2:868584/150‑1 (MQ=255)
                                                                                         aaaTACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAAAAAGCCAGGTTTTACCCCTTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGac                                                             <  2:348734/148‑1 (MQ=255)
                                                                                                gCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACt                                                   >  2:819656/1‑151 (MQ=255)
                                                                                                    cctttCGCAACCTTGGTTT‑GGTTTCG‑CTTTAAATAACCCAGGTTTTACCCCTTTAATTCACACCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTAtt                                               <  1:853044/148‑1 (MQ=255)
                                                                                                    ccGTTCGCAATCCTGTTTT‑GGCTTCG‑CCATTAATAACCCAGTTTTTATCCCCTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTAtt                                               <  2:98113/151‑1 (MQ=255)
                                                                                                    ccGTTCGCAATCCTGGTTT‑GGTTTCG‑CCATTAAAAAGCCAGGTTTTATCCCCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTAt                                                <  2:254680/150‑1 (MQ=255)
                                                                                                    ccGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTAtt                                               >  1:299650/1‑151 (MQ=255)
                                                                                                     cGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTg                                              >  1:894031/1‑151 (MQ=255)
                                                                                                      gTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTg                                              >  2:931306/1‑150 (MQ=255)
                                                                                                       ttCGCAATCCTGTTTT‑GGCTTCG‑CCATTAATAAGCCGGTTTTTATCCCCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTg                                              <  2:437013/149‑1 (MQ=255)
                                                                                                       ttCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTga                                             >  2:791136/1‑150 (MQ=255)
                                                                                                               ccTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAaataat                                    >  2:89523/1‑151 (MQ=255)
                                                                                                                cgtgTTT‑GGTTTCCCCCATTAATAGCCCGGTTTTTACCGCCTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTg                                              <  1:206908/138‑1 (MQ=255)
                                                                                                                   gTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAAtcttc                                >  2:390832/1‑151 (MQ=255)
                                                                                                                    ttt‑GGCTTCG‑CAATTAAGAAGCCGGTTTTTATCCCCTTTATCCAAACCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAaataat                                    <  1:112826/146‑1 (MQ=255)
                                                                                                                     tt‑GGCTCCC‑CCTTAAAAAAGCCAGTTTTTACCCCCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAAtcttct                               <  2:889957/150‑1 (MQ=255)
                                                                                                                         gCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCtt                           >  1:596500/1‑151 (MQ=255)
                                                                                                                            tCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCttttt                        >  2:94419/1‑151 (MQ=255)
                                                                                                                             cG‑CAATTAAAAACCCAGTTTTAACCACTTTAATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCttt                          <  1:967315/148‑1 (MQ=255)
                                                                                                                                ccATTAATAAGCCAGTTTTTATCCCCTTTACTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCttt                          <  2:467114/146‑1 (MQ=255)
                                                                                                                                caaTTAATAAGCCAGGTTTTACCCCCTTTATCCCCAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCtttt                         <  2:113195/145‑1 (MQ=255)
                                                                                                                                  aTTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTc                    >  1:716159/1‑150 (MQ=255)
                                                                                                                                     aataaGCCAGTTTTTATCCCCTTTTTTCCCAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCaaaa                <  2:382129/151‑1 (MQ=255)
                                                                                                                                     aaaaacccAGGTTTTATCCCCTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCaa                  <  1:572956/143‑1 (MQ=255)
                                                                                                                                     aaaaaccagctttttATCCCCTTTATCCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCTAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCa                   <  1:913910/137‑1 (MQ=255)
                                                                                                                                     aaaaaGCCAGGTTTTACCCCCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCaaa                 <  2:617463/147‑1 (MQ=255)
                                                                                                                                             aGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGc        >  1:360025/1‑151 (MQ=255)
                                                                                                                                              gtttttATCCCCTTTATCCACACCCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGc        <  1:74754/148‑1 (MQ=255)
                                                                                                                                                ttttACCCCCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCa       <  2:510030/149‑1 (MQ=255)
                                                                                                                                                  ttATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTg    >  2:866767/1‑150 (MQ=255)
                                                                                                                                                   tATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGAt  >  2:743523/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                  
ATCCCCGCAAAACCGCCAGCTACGCCATCTGGTGATGAGACGGGAGCAAGCTTATTCCATTTTAAATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTT‑GGCTTCG‑CCATTAATAAGCCAGGTTTTATCACCTTTATTCACAACCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATCAAAAGACAACAGAAACTTATTGAAGAAATAATCTTCTGCTTTTTTGTCAAAATAGTGAGCATTGAT  >  NC_000913/4537960‑4538255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑