| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,615,883 | A→C | intergenic (‑2/‑211) | yfgO ← / → bepA | putative UPF0118 family inner membrane permease/OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,615,883 | 0 | A | C | 98.2% | 210.9 / NA | 57 | intergenic (‑2/‑211) | yfgO/bepA | putative UPF0118 family inner membrane permease/OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base C (30/26); total (31/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATAAAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCAAAGGCGG > NC_000913/2615737‑2616027 | ccAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGAc < 2:642736/151‑1 (MQ=255) cAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGAcc > 2:562529/1‑151 (MQ=255) aTAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑Tg < 2:497876/151‑1 (MQ=255) caccaGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCt > 2:399331/1‑151 (MQ=255) gcaGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGa < 2:149028/151‑1 (MQ=255) aGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATc > 1:66852/1‑151 (MQ=255) aGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGCCGCCAAAACATTTGC‑TCAAAATTTTCGGCCTAAAGACCCTCCCTTAAACCCCAAAGGCGGGATTGcaacc > 1:758542/1‑147 (MQ=255) ggCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATcc > 1:743453/1‑151 (MQ=255) aCTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCa > 2:555028/1‑150 (MQ=255) cTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAAt > 2:890322/1‑151 (MQ=255) aGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTa < 2:132852/151‑1 (MQ=255) aaaaaGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATc < 1:334409/151‑1 (MQ=255) aaaaGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCg < 2:347752/151‑1 (MQ=255) aaaaGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCg > 1:30618/1‑151 (MQ=255) aGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGaaa < 2:556695/151‑1 (MQ=255) aGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGaaa < 1:738334/151‑1 (MQ=255) gATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAAt < 1:541429/151‑1 (MQ=255) aTAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATg < 1:279550/151‑1 (MQ=255) aTGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTca < 1:374955/151‑1 (MQ=255) tGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTcac > 1:540182/1‑151 (MQ=255) gCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTcac > 1:873775/1‑150 (MQ=255) ccAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTcaca > 1:807468/1‑150 (MQ=255) ccAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTcaca > 1:391956/1‑150 (MQ=255) cAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACaaa < 1:813211/151‑1 (MQ=255) aaTCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACaaaaa < 2:107965/151‑1 (MQ=255) aaTCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACaaaa > 2:734232/1‑150 (MQ=255) ccGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAg < 1:855501/150‑1 (MQ=255) cGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGAc > 2:469443/1‑151 (MQ=255) aCTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGc > 2:884636/1‑151 (MQ=255) cTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCt > 1:712968/1‑151 (MQ=255) cAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACg < 1:800791/151‑1 (MQ=255) aGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACgg > 2:558888/1‑151 (MQ=255) aGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACgg > 1:320831/1‑151 (MQ=255) cAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGa < 2:585907/150‑1 (MQ=255) aaTCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAgg < 2:685890/150‑1 (MQ=255) cGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAAc > 2:203005/1‑151 (MQ=255) cGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGaaa > 2:461594/1‑150 (MQ=255) gggTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGaaa > 1:711120/1‑149 (MQ=255) ggTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGt < 2:163189/151‑1 (MQ=255) tAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCAttt > 2:796664/1‑150 (MQ=255) tACCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCtt > 2:664529/1‑151 (MQ=255) aCCATTGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCtt < 1:362366/150‑1 (MQ=255) tGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCg < 1:399317/150‑1 (MQ=255) tGCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCg < 1:890301/150‑1 (MQ=255) gCATCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGtt < 1:283952/151‑1 (MQ=255) aTCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTac > 2:178479/1‑151 (MQ=255) aTCAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTac > 2:158596/1‑151 (MQ=255) cAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTacac > 2:107264/1‑151 (MQ=255) cAACATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTacac > 1:448523/1‑151 (MQ=255) aaCATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACt < 2:608441/151‑1 (MQ=255) cATTTCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACt > 1:523309/1‑149 (MQ=255) tttCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCaa > 2:386920/1‑150 (MQ=255) ttCGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCaaa < 1:790927/150‑1 (MQ=255) cGAGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCAAAggc > 2:759694/1‑151 (MQ=255) aGCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCAAAggcgg < 2:319625/151‑1 (MQ=255) gCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCAAAggcgg > 2:342456/1‑150 (MQ=255) gCATACAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACGTCGCTTTTTATGACGGATGCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCAAAggcgg < 2:835792/150‑1 (MQ=255) | CCAGCACAATAGCCACCAGCAACGGAGCAAGCAGGCCACTAAAGAAAAAGATAATGCCAAATCCGGCAACTAAAATAACCAGCAAGGCAATCGCTTCCGGGTCGCTAAAACGGCGGCGATACCATTGCATCAACATTTCGAGCATAAAGACCTTCCC‑TGAACCTCAAGAGCGGGATTGCGATCCGCAATTGTATCGAAATGTCACAAAAAAGACTTCGCTTTTTATGACGGATTCAGGAAACTGAAAAGTCATTTGAGTGGGCTAATCTTCGCCGTTACACTCAAAGGCGG > NC_000913/2615737‑2616027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |