| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,864,379 | A→C | I161L (ATT→CTT) | yidP → | UTRA domain‑containing GntR family putative transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,864,379 | 0 | A | C | 98.0% | 175.8 / ‑4.6 | 50 | I161L (ATT→CTT) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base C (30/19); total (31/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
GGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATATTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGTCATATAGCGAG > NC_000913/3864233‑3864519 | ggATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTg > 1:25954/1‑150 (MQ=255) aaaTCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACa > 1:813430/1‑148 (MQ=255) aaTCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAag > 2:715589/1‑149 (MQ=255) cAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGAttt > 1:524925/1‑151 (MQ=255) cTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGAtt > 2:296754/1‑151 (MQ=255) aCTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTg < 2:382480/146‑1 (MQ=255) aCTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTg < 2:52522/150‑1 (MQ=255) ctcCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGt > 1:65454/1‑151 (MQ=255) cccGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGt > 2:158100/1‑149 (MQ=255) cccGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTa < 2:930961/150‑1 (MQ=255) cccGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTa > 1:850189/1‑150 (MQ=255) gttcgttTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGaa > 2:354440/1‑150 (MQ=255) cgttTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGcc > 1:75488/1‑151 (MQ=255) gttTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCt > 1:819112/1‑151 (MQ=255) tttGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGACTg > 2:740914/1‑150 (MQ=255) tgtgGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGAc < 1:78190/150‑1 (MQ=255) ggAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCt < 1:669366/151‑1 (MQ=255) gAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTc > 1:889007/1‑151 (MQ=255) aaCCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGc > 2:657642/1‑151 (MQ=255) aTGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGa > 1:305114/1‑150 (MQ=255) aTGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGAc > 1:625341/1‑151 (MQ=255) aTGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGCCGAAGTTTGAATATCCTGAACAAGAGGGCGGGATTTTGATTGGCGGAAATTATGAAAACCTCACGCCAATGCTCGCGGATAGAc > 1:172195/1‑151 (MQ=255) gCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGActg < 2:343876/151‑1 (MQ=255) gCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGAct < 1:882558/150‑1 (MQ=255) tGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGACGATAGActgc > 2:612813/1‑150 (MQ=255) ggAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGActgct < 1:905304/150‑1 (MQ=255) gAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTgg > 1:673476/1‑151 (MQ=255) aaGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGgc < 2:322457/151‑1 (MQ=255) aGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGc > 1:911451/1‑151 (MQ=255) atatGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAAt > 1:748228/1‑151 (MQ=255) atatGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAAt < 1:665899/151‑1 (MQ=255) atGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATg > 1:569327/1‑150 (MQ=255) cGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAgg > 1:30592/1‑150 (MQ=255) cGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGt < 1:449342/151‑1 (MQ=255) aaaaCTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCg < 2:573958/151‑1 (MQ=255) aaaCTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCgg < 1:346788/151‑1 (MQ=255) tCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAacaca < 2:196776/150‑1 (MQ=255) aaTCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCa < 1:649978/150‑1 (MQ=255) aaTCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCa < 2:484796/150‑1 (MQ=255) tttCGCTGCAACATCTGGAAGGGTCGAAGTTTGCATATATTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTTACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCCAATGAAGGTAGCGGAACACACGCCActgct > 1:684883/1‑151 (MQ=255) cGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCg < 2:829210/151‑1 (MQ=255) gCTGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCgg > 2:26544/1‑151 (MQ=255) cTGCAACATCTGGACGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGGAATTTTGAAAGACTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACCCACGCCACTGCTGCgg > 1:424490/1‑150 (MQ=255) tGCAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGAt > 2:539512/1‑151 (MQ=255) cAACATCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATc > 1:295679/1‑150 (MQ=255) aTCTGGAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTc > 2:414957/1‑151 (MQ=255) gAAGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGt > 2:505478/1‑151 (MQ=255) aaGGGTCGAAGTTTGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGTc > 2:235483/1‑151 (MQ=255) ggTCGAAGTTTAAATTTCTTGAAAAAGAGTGCGGGATTTTGATTGCCGGTAATTTTGAAAGCCTGACGCCAGGGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGTCata < 1:372159/151‑1 (MQ=255) tttGAATATCTTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGTCATATAGCgag < 2:248387/150‑1 (MQ=255) | GGATTCAAATCAACGAGCAGATCTACTTCTCCCGTCGCGTTCGTTTTGTGGAAGGGAAACCGCTGATGCTGGAAGACAGCTATATGCCGGTAAAACTGTTCCGTAATCTTTCGCTGCAACATCTGGAAGGGTCGAAGTTTGAATATATTGAACAAGAGTGCGGGATTTTGATTGGCGGTAATTATGAAAGCCTGACGCCAGTGCTCGCCGATAGACTGCTGGCGCGGCAAATGAAGGTAGCGGAACACACGCCACTGCTGCGGATCACCTCGTTGTCATATAGCGAG > NC_000913/3864233‑3864519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |