Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,557,770 A→C L90R (CTC→CGC)  ddpF ← D,D‑dipeptide ABC transporter ATPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,557,7700AC100.0% 177.0 / NA 49L90R (CTC→CGC) ddpFD,D‑dipeptide ABC transporter ATPase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (21/28);  total (21/28)

GGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGACTCGCCGACGATCCCTA  >  NC_000913/1557627‑1557905
                                                                                                                                               |                                                                                                                                       
ggTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTc                                                                                                                                  <  2:269076/151‑1 (MQ=255)
  tCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCt                                                                                                                                >  1:664472/1‑151 (MQ=255)
    gagaTACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGa                                                                                                                              <  2:138236/151‑1 (MQ=255)
     agaTACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGaa                                                                                                                             <  2:744315/151‑1 (MQ=255)
      gaTACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGaaa                                                                                                                            <  2:727070/151‑1 (MQ=255)
         aCTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAacac                                                                                                                         <  2:4690/151‑1 (MQ=255)
               gACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTg                                                                                                                   >  2:722396/1‑151 (MQ=255)
               gACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTg                                                                                                                   <  1:160084/151‑1 (MQ=255)
                 cGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGc                                                                                                                  >  2:492691/1‑150 (MQ=255)
                  gAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCAt                                                                                                                >  2:718045/1‑151 (MQ=255)
                      aCCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATg                                                                                                            >  2:126881/1‑151 (MQ=255)
                               cacaGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTtgtg                                                                                                     <  1:318406/149‑1 (MQ=255)
                                acaGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGc                                                                                                  >  2:445327/1‑151 (MQ=255)
                                 caGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGcc                                                                                                 >  1:457264/1‑151 (MQ=255)
                                  aGCCAACTCCTCTGCAATCGGTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCAACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGcc                                                                                                 <  1:704732/150‑1 (MQ=255)
                                    ccAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGa                                                                                              <  1:281647/151‑1 (MQ=255)
                                     cAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGa                                                                                              >  1:262205/1‑150 (MQ=255)
                                       aCTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACg                                                                                           <  2:678326/151‑1 (MQ=255)
                                          cctcTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACgg                                                                                          <  2:615266/149‑1 (MQ=255)
                                           ctctGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATg                                                                                       >  1:39637/1‑151 (MQ=255)
                                                ccAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTg                                                                                  <  2:811535/151‑1 (MQ=255)
                                                     gCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGt                                                                             >  2:360514/1‑151 (MQ=255)
                                                        cgccgcTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTg                                                                            <  1:592699/149‑1 (MQ=255)
                                                        cgccgcTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTg                                                                            <  2:455319/149‑1 (MQ=255)
                                                           cgcTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCg                                                                       <  1:474063/151‑1 (MQ=255)
                                                            gcTGTTTTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGGGCCAGAACGGATGTACGGCCGGTGGCTc                                                                        <  1:367467/149‑1 (MQ=255)
                                                            gcTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCgg                                                                      >  1:223886/1‑151 (MQ=255)
                                                            gcTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCgg                                                                      >  2:767896/1‑151 (MQ=255)
                                                                 tgttCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTgc                                                                  >  1:162143/1‑150 (MQ=255)
                                                                     cACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTgcagca                                                              <  2:926402/150‑1 (MQ=255)
                                                                     cACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCAt                                                             >  2:550281/1‑151 (MQ=255)
                                                                      actactACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATa                                                            <  1:508293/151‑1 (MQ=255)
                                                                      actactACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATa                                                            <  2:554305/151‑1 (MQ=255)
                                                                       ctactaCGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATa                                                            <  1:149880/150‑1 (MQ=255)
                                                                       ccactacACTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACGCCGATAAACGCGGTTTCAGCGAAGAGCGTGCGACTTGAAACGCCACCTCCATAATGCGTTGTGAGCCAGAACGGATTTACTGCCCGTGGCTCGGTTGCGGCATa                                                            <  1:710653/148‑1 (MQ=255)
                                                                         actacGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATAccc                                                         >  2:566962/1‑151 (MQ=255)
                                                                                ttAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTaaa                                                   >  1:537316/1‑150 (MQ=255)
                                                                                 tAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTaaaa                                                  <  1:855139/150‑1 (MQ=255)
                                                                                  aGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAg                                                 <  1:528730/150‑1 (MQ=255)
                                                                                      aTCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCtgt                                             <  2:113844/150‑1 (MQ=255)
                                                                                          agagCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCg                                          >  2:141088/1‑149 (MQ=255)
                                                                                          agagCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCg                                          >  2:905111/1‑149 (MQ=255)
                                                                                            agCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTATGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAggg                                      >  1:231738/1‑151 (MQ=255)
                                                                                              cGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTg                                    <  1:809643/151‑1 (MQ=255)
                                                                                                           atgCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGc                       <  1:46521/151‑1 (MQ=255)
                                                                                                                 cacaCCGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGACt                 <  1:8123/151‑1 (MQ=255)
                                                                                                                      cGGTAAGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGACTCGCcg            <  1:694614/151‑1 (MQ=255)
                                                                                                                          aaGCGCGGATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGGGCTTTTGCCGCAGCCTGACTCGCcgacg         >  1:637888/1‑150 (MQ=255)
                                                                                                                                 gATTAAGCGAAGAGCGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGACTCGCCGACGATCCCTa  >  2:605968/1‑150 (MQ=255)
                                                                                                                                               |                                                                                                                                       
GGTCGAGATACTCCGGACGAATACCCACCTGCACAGCCAACTCCTCTGCCAACGCTCGCCGCTGTTGTTCACTACTACGCTTAGCTATCCAGAGCGGTTCTGTGATGATGCGCCACACCGGTAAGCGCGGATTAAGCGAAGAGAGCGGGTCCTGAAACACCATCTGCATAATGCGTTGTGAGCCAGAACGGATGTACTGCCCGTGGCTCGGTTGCAGCATACCCATTAAAAGCTGTGCGAGGGTGCTTTTGCCGCAGCCTGACTCGCCGACGATCCCTA  >  NC_000913/1557627‑1557905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑