| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,880 | 0 | T | C | 42.4% | 123.5 / 26.3 | 85 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| Reads supporting (aligned to +/- strand): ref base T (38/11); new base C (0/36); total (38/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.06e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGA > NC_000913/357733‑358024 | cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTccg > 1:580475/1‑151 (MQ=255)cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTccg > 2:1938336/1‑151 (MQ=255)cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTccg > 2:1893546/1‑151 (MQ=255)cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTc < 2:1520880/149‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAGATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTccgc < 2:928441/151‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTccgcc > 2:1456459/1‑151 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTccgcc < 2:1894766/150‑1 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTccgcc > 1:170095/1‑149 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCcgccgc > 2:1008878/1‑150 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGca < 1:769636/150‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGcaac > 2:560089/1‑151 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGcaac > 2:1489631/1‑150 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGcaac‑aa > 1:1510675/1‑150 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑aaa < 2:965819/151‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑aaaa < 1:548192/150‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAAc < 1:1302530/151‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAAc > 1:1090089/1‑151 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAAcc < 2:570887/151‑1 (MQ=255) gCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAAccg > 1:1742135/1‑151 (MQ=255) gtggcgcATCAGGCAATTCCAGCCGCAGACCTGTGCCAGCGGCTACCGTGATTCATTCCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAAccgcc < 1:1019065/148‑1 (MQ=255) cATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAATTGCTTT‑CGGGCCGGTGGCCTCCA‑AGC‑AATTTTCCGGCGCAAA‑CAAAACGCCGGtc > 2:516288/1‑148 (MQ=14) aTCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTtctct > 2:1840328/1‑151 (MQ=255) tCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTtctctc > 1:1741195/1‑151 (MQ=255) aGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTcc > 2:164634/1‑150 (MQ=255) aGGCAATTCCAACCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACTACCGCACATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAATCGCCGTTCTCTcc > 1:1420711/1‑150 (MQ=255) tgccAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTg > 1:275211/3‑151 (MQ=255) ccccccccAGACTTGTGCCAGCGCCTCCCGTATTTCTTTCCCCCC‑AACACCCGCGCTTTTCCCCAC‑CCCCTTGTGAAAAAAGCCCTT‑CGGGGCGGCTGTCTCCC‑AGTTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCag < 1:980264/137‑1 (MQ=255) ccAGCCGCTGTCCTGTTCCAGCGGCTCCCTTATTTCTTTCCCCCA‑AACACCCGCGCATTTCCCCAC‑CCCATTGTAAAAAAATGCCTC‑CGCGGCGGCTGTCTCCC‑AGCTTTTTTCCCGCCGAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGc < 1:167275/151‑1 (MQ=255) ccAGCCGCAGCCCTGTGCCAGGGCCCCCCGTTATTCTTTCCCCCC‑AACACCCGCGCTTTTATCCAC‑CCCCTTGTGAAAAAAGGCCTC‑CGCGGCGGCTGTCTGCA‑AGTTATTTTCCCGCCGAAAA‑AAAACCGCCGTTCTCTCCAGTAGTg < 2:392517/149‑1 (MQ=255) ccAGCCGAAGACTTGTGTCAGGGGCTCCGGGGATTCATTCCCGCA‑AACACCCGCGCTTTTACCCAA‑CGCCTTGTGCAAAAATGCCTC‑CGGGGGGGCTGTCTCCC‑AGTTATTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTg < 2:933101/149‑1 (MQ=255) cAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑g > 2:1054622/1‑151 (MQ=255) cAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑g > 1:358664/1‑151 (MQ=255) cAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑g > 2:289151/1‑151 (MQ=255) cAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑g > 2:620202/1‑151 (MQ=255) ccacagccgtgtgCCAGCGGCTCCCGGGATTCTTTCCCCCC‑AACACCCGCGCTTTTACCCAC‑CGCCATGTGCAAAATTGCCTT‑CGCGGCGCCTGTCTGCC‑AGTTTTTTTCCCGCCGAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑gggg < 1:74405/142‑1 (MQ=255) ccGCAGCCCTGTGTCAGCGGCTACCGTGATTCTTTCCCGCC‑AACACCCGCGATTTTACCCAC‑CGCCATGTGAAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGTTTTTTTTCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑ggg < 2:1664158/150‑1 (MQ=21) cgcacccgtgttTCAGCGGCTCCCTTTTTTCTTTTCCCCC‑AACACCCCCCCATTTCCCCAA‑CGCCTTTTGAAAAACTGCCTC‑CGGGGCGGTTTTCTGCC‑AGTTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑gggg < 2:490702/142‑1 (MQ=255) cGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑ggg > 1:1840195/1‑149 (MQ=255) cAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑ggcgg > 2:1385238/1‑146 (MQ=255) aGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑ggggg > 2:1828828/1‑147 (MQ=255) gACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑gggg > 2:276482/1‑146 (MQ=255) ccTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGGagag > 1:679009/1‑150 (MQ=255) cTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGCAgaga > 2:1090180/1‑150 (MQ=255) tgtgTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑gggg > 1:1927349/1‑142 (MQ=255) aGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑gggggcgaggagaaaaa > 1:1050189/1‑136 (MQ=255) cGGCTCCCGTGTTTCATCCCCCCC‑AACACCCGCGCTTTTCCCCAA‑CCCCTTGTGAAAAAATGCTTG‑CGGGGCGGCTGTCTCCC‑AGTTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGaa < 1:1963481/142‑1 (MQ=255) ggCTCCCGTAATTCATCCCCCCC‑AACACCCGCGCTTTTACCCAC‑CCCCATGTGAAAAAATCCCTC‑CGCGGCGGCTGTCGGCA‑AGCTTTTTTCCCGCCAAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTa < 1:1714806/150‑1 (MQ=255) ggCTACCGTGATTCTTTCCCGCC‑AACACCCGCGCATTTACCCAC‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTTTCTGCC‑AGTTATTTTCCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTaa < 2:90508/151‑1 (MQ=25) ccctgttttCTTTCCCGCC‑AACACCCG‑GTATTTTACCAACCCCCATGTGAAAAAAGCCCTC‑CGCGGCGCCTTTCTGCA‑AGTTTTTTTCCCCCCCAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGccc < 1:1029627/144‑1 (MQ=255) ccgtatttCATTCCCCCC‑AACACCCGCCCTTTTACCCAC‑CCCCTTGTGAAAAATGGCCTC‑CGCGGCGGCTGTCTGCC‑AGTTATTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGc < 1:885827/142‑1 (MQ=255) ccggatttctttCCCCCAAACACCCGCGTTTTTACCCAC‑CCCCAGGTAAAAAATTCCTTT‑CGGGGCGGCTGTCGCCC‑AGTTTTTTTCCCGCCCAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGc < 1:1907464/139‑1 (MQ=255) aTTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGGAGAGaaaaaaattttaaacc > 2:760795/1‑132 (MQ=25) tCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAAAAAC‑CTTAAAACCCTCCtg‑tt > 2:984516/1‑151 (MQ=25) ccATTCCCCCA‑AACACCCCCGAATTTACCAAC‑CGCAATGT‑AAAAAAAGCCCT‑CGGGGGGGGCTTCCGGC‑AGGTTTTTTTCCCCCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCAt < 1:1008859/147‑1 (MQ=255) ttCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGGAGAGAAAAAAC‑CTTTAACCCGTCCCT‑Ttgtgt > 1:1181364/1‑151 (MQ=25) ccccc‑AACACCCGCGCATTTCCCAAC‑CGCCATGTAAAAAAATCCCTT‑CGGGGGGGCTGTCGGCC‑AGTTTTTTTCCCGCCAAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCAtg‑t < 1:605189/141‑1 (MQ=255) ccccc‑AACACCCGCCCATTTACCCAC‑CGCCATGTGAAAAAATCCCTT‑CGCGGCGGCTTTCTGCC‑AGCTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑Ttgtgt < 2:1397849/146‑1 (MQ=255) cc‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGCAAG‑GAAAAAGA‑TTTAAGCCGGTc > 2:1384590/1‑138 (MQ=25) aacaccCGCGCTTTTACCCAC‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTTTTTTCCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATc < 2:756120/151‑1 (MQ=38) gcccattaccccAA‑CGCCAGGTCAAAAAAGCCCTG‑CGCGGCGGCTGCCGGCC‑AGTTTTTTTCCCGCCGAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCgctgct < 1:606108/140‑1 (MQ=255) tATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGGAAAGAAAAAACATTTAAACCC‑CCATG‑TTTTGGGGGGATCGCTGCTGGtgaaa > 2:397757/1‑146 (MQ=25) ccAC‑CGCCATGTGAAAAAATGCCTC‑CGCGGCGGCTGTCTGCC‑AGTTGTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAAtgt < 2:1963078/151‑1 (MQ=255) ccacccccgtgtaaaaaaaGCCCTC‑CGCGGCGGCTGTCTGCC‑AGTTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAAtg < 2:1085837/136‑1 (MQ=255) aa‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGGAGCGAAAAAAA‑ATTAAACCCCCCCTG‑TTGTTGGGGCATCGCTGCTggggaca > 1:236927/1‑140 (MQ=21) acccccATGTGC‑AAAATGCCTTCCGCGGCGTCTGTCGGCC‑AGTTTTTTTCCCGCCGAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTgg < 1:1268688/147‑1 (MQ=255) cccaaTGTGAAAAAATGCCTC‑CGCGGCGGTTGTCTGCC‑GGCTATTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGa < 2:1474553/146‑1 (MQ=255) ccATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGAAGAGAAAAAAC‑CTTAATCCCCGCCTGCTTTTGTGG‑AATCGgtgctgtggggtcaat > 1:854643/1‑135 (MQ=25) ccgtgtgaaaaaaGCCTTCCGGGGCGGCTGTCGGCC‑AGTTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAg < 1:1673284/144‑1 (MQ=255) gtgAAAAAATCCCTT‑CGCGGCGGCTGTCTGCC‑AGTTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGaa < 2:1717033/151‑1 (MQ=255) aaaatTCCCTC‑CGGGGCGCTTGTCCCCC‑AGTTTTTTTCCCGCCACAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTg < 1:1456434/150‑1 (MQ=255) aaaaaTTCCTT‑GGCGGGGGCGGGCTGCCGACCTATTTTCCCCCGGAAAA‑AAACCCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGaaa < 2:815717/143‑1 (MQ=255) aaaaaTCCTTC‑CGGGGGGGCTTTCTCCC‑GGTTTTTTTCCCGCCAAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTgc < 1:722030/151‑1 (MQ=255) aaaaaTCCCTG‑CGCGGCGCCTTTCTGCC‑GGTTATTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGt < 1:507422/149‑1 (MQ=255) aaaaTGCCTT‑CGCGGGGGCTGTCTCCC‑ATCTTTTTTCCCGCCGAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTgcg < 1:1443590/151‑1 (MQ=255) ccTT‑CGCGGCGGTTGTCTGCC‑AGCTTTTTTCCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTgcggcg < 2:394529/148‑1 (MQ=255) ccTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGGAGAGAAAAAAA‑TTTTAAACCCCCCTT‑TTTTGTGGGGATTGCCGGTGGGAAAAAAGTGggaagggaaggggggg > 1:1902162/1‑141 (MQ=255) tccggggcgccTGTCTGCC‑AGTTATTTTCCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 2:1087478/145‑1 (MQ=255) t‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGGGAGAGAAAAAAA‑TTTTAACCCCCCCTG‑TTTTGTGGGGAATGCCGCTGGGTACAAAGTGGGAAGGGGAgggggggggaac > 2:1811705/1‑138 (MQ=255) ccgcgGCGCTTTTCTGCA‑GGTTTTTTTCCCGCCAAAAA‑AAATCCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAAt < 1:226325/147‑1 (MQ=255) ggcggcTTCCTGCC‑ATTTTTTTTCCCGCCGAAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCt < 1:1389652/149‑1 (MQ=255) gcgtttCTGCC‑GGTTTTTTTCCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGc < 1:470864/140‑1 (MQ=255) cggCC‑ACCTTTTTCCCCGCCGCACA‑AACACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAAcc < 2:1002404/146‑1 (MQ=255) tccc‑AGTTTTTTTCCCGCCACAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAAcc < 2:572098/145‑1 (MQ=255) ctcccggtttttttcCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAAc < 1:1233884/137‑1 (MQ=255) cc‑AGTTTTTTTCCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcg < 2:553765/146‑1 (MQ=255) cc‑AGTTTTTTTCCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCt < 2:772334/150‑1 (MQ=255) ccgtcttttttcCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCt < 1:82493/143‑1 (MQ=255) ccggtttttttcCCCCCGAAAA‑AAACCCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcgc < 1:18721/140‑1 (MQ=255) agtttttttcCCGCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAAt < 1:331980/146‑1 (MQ=255) ttttcCCCCCGCAAA‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGa < 1:356676/149‑1 (MQ=255) | CGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAA‑CGCCATGTGCAAAAATGCCTT‑CGCGGCGGCTGTCTGCC‑AGCTATTTTTCCGCCGCAAC‑AAAACCGCCGTTCTCTCCAGTAGTGGC‑‑GGGGCAAGAGAAATAGC‑TTTAAGCCCGTCATG‑TTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCGCGCTAATTGA > NC_000913/357733‑358024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |