Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,911,491 Δ7,528 bp [relA][gudD] [relA], rlmD, barA, [gudD]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2911491 2919018 7528 44 [0] [0] 43 [relA]–[gudD] [relA], rlmD, barA, [gudD]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 29114900 (0.000)40 (0.920) 35/280 0.4 100% coding (2162/2235 nt) relA (p)ppGpp synthetase I/GTP pyrophosphokinase
?NC_000913 2919019 = 0 (0.000)coding (367/1341 nt) gudD D‑glucarate dehydratase 1

AACCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCACTTGCAGGTTGTAAATCTCAATGGTCATGTCGATGGTCGCCAGTTGCTGTTTGGTGTCGCTACGGCTGGCAACGCCAAGCACGTTCACCTTCTCGTTGGCGAGAATGGTCGTGATATCACGTAACAACCCACTACGATCATTAGCTACC  >  NC_000913/2911340‑2911639
                                                                                                                                                      |                                                                                                                                                     
aaCCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCA                                                                                                                                                       <  1:670007‑M1/151‑1 (MQ=255)
        ccTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagc                                                                                                                                               <  1:14418‑M1/151‑9 (MQ=255)
        ccTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccag                                                                                                                                                <  1:340644‑M1/150‑8 (MQ=255)
        ccTCAAACCGCTATCATATGTAGATACAGTATACATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTACCTCCCGTGCAACCGACGCGCGTCGATATCATCCGGCTCCTGGTTGAGTTTACCCTGCACGCGCCCCAGCAgatccagg                                                                                                                                               <  2:29646‑M1/151‑9 (MQ=255)
           cAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcatt                                                                                                                                            <  1:92414‑M1/151‑12 (MQ=255)
            aaaCCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattg                                                                                                                                           <  1:197078‑M1/151‑13 (MQ=255)
                       atatGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatc                                                                                                                                >  2:239434‑M1/1‑128 (MQ=255)
                        tatGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcc                                                                                                                               >  2:166455‑M1/1‑127 (MQ=255)
                          tGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccg                                                                                                                             >  1:204888‑M1/1‑125 (MQ=255)
                                    gTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacat                                                                                                                   >  1:688423‑M1/1‑115 (MQ=255)
                                       tatatCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatga                                                                                                                 >  1:535400‑M1/1‑112 (MQ=255)
                                           tCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagt                                                                                                            >  1:83318‑M1/1‑108 (MQ=255)
                                            cAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtg                                                                                                           >  1:101740‑M1/1‑107 (MQ=255)
                                            cAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagt                                                                                                            <  1:190106‑M1/150‑44 (MQ=255)
                                               tCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggt                                                                                                         >  2:253971‑M1/1‑104 (MQ=255)
                                                 tACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtac                                                                                                       >  1:443967‑M1/1‑102 (MQ=255)
                                                    aTTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtag                                                                                                   <  1:495492‑M1/151‑53 (MQ=255)
                                                      tGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtgcgtag                                                                                                   <  2:442068‑M1/149‑53 (MQ=255)
                                                             aCGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagaggtacgtaggtcaaatgt                                                                                          <  2:522191‑M1/151‑62 (MQ=255)
                                                              cGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtc                                                                                         >  2:327891‑M1/1‑89 (MQ=255)
                                                                               aaCTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgccca                                                                          <  2:692619‑M1/149‑78 (MQ=255)
                                                                                  tCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagc                                                                     >  1:605139‑M1/1‑69 (MQ=255)
                                                                                  tCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccactat                                                                            >  1:71521‑M1/1‑69 (MQ=255)
                                                                                  tCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccactat                                                                            <  2:71500‑M1/144‑76 (MQ=255)
                                                                                       tGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatca                                                                 <  1:215962‑M1/150‑87 (MQ=255)
                                                                                                   gcgTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaa                                                      >  2:193314‑M1/1‑52 (MQ=255)
                                                                                                    cgTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaag                                                    <  2:496961‑M1/150‑100 (MQ=255)
                                                                                                     gTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagta                                                  <  2:299071‑M1/151‑102 (MQ=255)
                                                                                                       cGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtatt                                                <  1:201402‑M1/151‑104 (MQ=255)
                                                                                                        gATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtatta                                               <  2:459445‑M1/151‑105 (MQ=255)
                                                                                                           aaCATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggacaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgc                                            <  2:159431‑M1/151‑108 (MQ=255)
                                                                                                            aCATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgca                                           <  1:558719‑M1/151‑109 (MQ=255)
                                                                                                                      ccTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgtttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtc                                   >  2:723755‑M1/1‑33 (MQ=255)
                                                                                                                       cTGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtc                                   >  2:71116‑M1/1‑32 (MQ=255)
                                                                                                                        tGGTTGAGTTTACCCAGCACGCGCCCCAGCAgatccagcattgctgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcag                                 >  2:359972‑M1/1‑31 (MQ=255)
                                                                                                                         ggTTGAGTTTACCCAGCACGCGCCCCAGCAgagccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcacaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaac                              <  2:22345‑M1/151‑122 (MQ=255)
                                                                                                                                   aCCCAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgta                     <  2:477076‑M1/150‑131 (MQ=255)
                                                                                                                                    cccAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtcttacgcaccagcgtcagaacgtttttgta                     <  2:344931‑M1/149‑131 (MQ=255)
                                                                                                                                    cccAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtatt                   <  2:626466‑M1/151‑133 (MQ=255)
                                                                                                                                    cccAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtatt                   >  1:246410‑M1/1‑19 (MQ=255)
                                                                                                                                    cccAGCACGCGCCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtat                    <  2:73990‑M1/150‑132 (MQ=255)
                                                                                                                                              gcCCCAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgt         >  1:3848‑M1/1‑9 (MQ=255)
                                                                                                                                               ccccAGCAgatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgtt        >  2:50124‑M1/1‑8 (MQ=255)
                                                                                                                                                      agatccagcattgccgcttctatcccggtaactacatgaatagtggtacgtaggtcaaatgtctgcaaaccgcgcccaccagcatcacgatcggcaaaagtattacgcaccagcgtcagaacgtttttgtattcacccagcgttttacct  >  1:66226‑M1/1‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
AACCCTTTCCTCAAACCGCTATCATATGTAGATACAGTATATATCAATCTACATTGTAGATACGAGCAAATTTCGGCCTAACTCCCGTGCAACCGACGCGCGTCGATAACATCCGGCACCTGGTTGAGTTTACCCAGCACGCGCCCCAGCACTTGCAGGTTGTAAATCTCAATGGTCATGTCGATGGTCGCCAGTTGCTGTTTGGTGTCGCTACGGCTGGCAACGCCAAGCACGTTCACCTTCTCGTTGGCGAGAATGGTCGTGATATCACGTAACAACCCACTACGATCATTAGCTACC  >  NC_000913/2911340‑2911639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.