| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 44.3% | 99.8 / 14.5 | 61 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (31/3); new base C (0/27); total (31/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.57e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCA > NC_000913/2001770‑2002063 | gCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑cc < 1:845475/151‑1 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCggg > 1:465993/1‑151 (MQ=255) aCGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGa > 1:659180/1‑149 (MQ=255) aTAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCa > 1:33629/1‑150 (MQ=255) aaaCCGCCCTGGTTTATATGAGTTTCGGGCATATTTATCCGTTTCTGGAGGTTTTTAAACGGGACTTTTAGGGGGGGAAATGGGGGGTT‑TTGGGGGG‑TTCACGGGAAAA‑TTCCGGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACg < 1:254561/150‑1 (MQ=255) aaCAGCCCTGGTTTATATGAGTTGTCGGCATGATTATCCGTTTCTGCGGGTTTTTTAATCGGACGATTGGGGGGTGAAAGGGGGGGTTTTTTGGGGG‑TT‑ACAGGTAAA‑TCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGtt < 2:378467/151‑1 (MQ=255) aaCAGCCCTGCTTTATATGAGTTATCGGCATGATTATCCTTTTCTGCAGGGTTTTTAAGCGGACGATTGGGGGGTAAAAGGGGGGGTTATTGGGGGG‑TT‑ACAGGTAAA‑TTCCAGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGtt < 1:84907/151‑1 (MQ=255) cAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGc > 2:678733/1‑151 (MQ=255) gCCCTGCGTTATATGATTTATCGGCATGATTATCCTTTTCTGAGGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGTTTTTTGGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCt < 1:762254/150‑1 (MQ=255) ccTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGAc > 1:194013/1‑151 (MQ=255) gCGTTATATGAGTTATCGGCATGATTTTCGGTTTCTGCAGGTTTTTAAAGCGGACGATTAGGGGGTAAAATGGGGGGTTTTTTGGGGG‑TT‑ACAGTTAAT‑TCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGAc < 2:398249/148‑1 (MQ=255) gTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt > 1:397063/1‑151 (MQ=255) ttATATGAGTTATCGGCATGATTATCCTTTTCTGCAGGTTTTTTAATCGGACGATTAGGGGGTAAAATGAGGGTTTATTGGGGGG‑TT‑ACAGTAAAA‑TTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt < 1:600195/149‑1 (MQ=255) ttATCGACATGATTTTCCTTTTCTGCGGGTTTTTTAACCGGAAGTTTGGGGGGTAAAAGGGGGGTTTTTTGGGGGG‑TT‑ACAGAAAAA‑TCCCAGCAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg < 2:372483/142‑1 (MQ=255) tATCGGCATGATTATCCGTTTCTGCGGGTTTTTTAATCGGACGATTAGGGGGTAAAATGAGGGTTTATTGGGGGG‑TT‑ACGGGTAAA‑TTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATg < 1:500512/150‑1 (MQ=255) tATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATg > 2:510147/1‑150 (MQ=255) cgggCATGTTTACCCTTTTCTCCAGGTTTTTAAATGGGACGTTTAGGGGGAGAAAGGGGGGGTTTTTTGGGGT‑TA‑AAAGTAAAA‑TCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGtt < 2:10313/148‑1 (MQ=255) gCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg > 2:256558/1‑151 (MQ=255) cATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCgg > 2:871453/1‑151 (MQ=255) gATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg > 2:241853/1‑151 (MQ=255) ttATCCTTTTCTGCGGGTTTTTTAATGGGACGATTAGGGGGTAAAAGGGGGGTTTATTGGGGGG‑TT‑ACAGGTAAT‑TCCCAGGAAAAAAAACC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCgg < 2:696938/146‑1 (MQ=255) ttATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg > 2:728364/1‑151 (MQ=255) tATCCGTTTCTGCGGGGTTTTTAAGCGAACGATTGGTGGGGAAAATGAGGGTTTATTTGGGGT‑TT‑ACAGGAAAA‑TTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg < 2:754796/150‑1 (MQ=255) tttCTGCGGGTTTTTTAATCGGACGTTTGGTGGGTAAAATG‑GGGGTTTTTTGGGGGTTT‑ACAGGTAAT‑TCCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa < 2:376718/150‑1 (MQ=255) ttCTGCAGGGTTTTAAAGCGGAAGATTAGTGGGTAAAATGGGGGTTTATTGGGGGG‑TT‑AAAGGTAAA‑TTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaaa < 1:851679/150‑1 (MQ=255) gCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCt > 2:16734/1‑151 (MQ=255) aGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt > 2:554439/1‑150 (MQ=255) ggTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATc > 2:519407/1‑151 (MQ=255) ttAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc > 2:816030/1‑151 (MQ=255) aaacGGACGATTAGGGGGTGAAAGGAGGGTTTATTGGGGGT‑TT‑AGAGTTAAA‑TTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt < 1:475577/147‑1 (MQ=38) aaTCGGACGTTGGGGGGGTAAAAGGGGGGGTTTTTGGGGGG‑TT‑ACGGAAAAA‑TCCCGGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc < 2:736932/148‑1 (MQ=25) aCGATTGGGGGGTGAAAGGGGGGTTTATTGGGGGG‑TT‑ACAGGTAAA‑TTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa < 1:137322/150‑1 (MQ=37) aTTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt > 1:180342/1‑151 (MQ=255) ttggggggTGAAATG‑GGGGTTTTTTGGGGGTTT‑ACAGGTAAA‑‑TCCAGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg < 1:532060/144‑1 (MQ=25) ttAGGGGGAAAAATGAGGGGTTATTGGGGGT‑TA‑ACAGGTAAA‑TCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt < 1:545696/150‑1 (MQ=37) gggggTAAAATG‑GGGGTTTTTTGGGGGTTT‑ACAGTTAAA‑TTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtgaa < 2:341475/148‑3 (MQ=37) tGAGGGGTTATTTGGGGG‑TT‑ACAGGCAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa > 2:701713/1‑150 (MQ=255) gagggggTTTTTTGGGGT‑TA‑AAAGTTAAT‑TCCCGGGAAAAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaaa < 2:447277/148‑1 (MQ=25) aGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt > 1:2901/1‑151 (MQ=255) ggggTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTg > 1:426720/1‑151 (MQ=255) gggTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc > 1:694202/1‑151 (MQ=255) tttttGGGGGTTT‑ACAGGAAAT‑TCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCa < 2:561226/147‑1 (MQ=25) tATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAtt > 1:672858/1‑151 (MQ=255) tttGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGCTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATTTGCAAATTCAATAAATTGCAAtt > 2:452976/1‑149 (MQ=255) gggg‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACtt > 2:17230/1‑151 (MQ=255) ggg‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg > 1:408347/1‑151 (MQ=255) gg‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 2:553207/1‑151 (MQ=255) ggtttaaGGTAAATTTCGGGGAAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 1:78190/145‑1 (MQ=25) tt‑ACAGTTAAA‑TCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTa < 2:340916/150‑1 (MQ=255) tt‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 2:688651/1‑149 (MQ=255) t‑ACAGAAAAA‑TTCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAg < 2:57123/150‑1 (MQ=255) aCAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc > 1:766703/1‑151 (MQ=255) aCAGGTAAA‑TCCCAGGCAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc < 2:29710/151‑1 (MQ=255) cAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATACGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGcc > 2:658477/1‑151 (MQ=255) gttAAA‑TTCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAg < 2:596887/144‑1 (MQ=255) aaa‑TCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAg < 2:464295/143‑1 (MQ=255) aaa‑TCCCAGGAAAAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGa < 2:114828/149‑1 (MQ=255) aa‑TCCCAGGCAGAAAAAAC‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATaa < 2:247026/151‑1 (MQ=255) ttCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc > 2:214332/1‑151 (MQ=255) gCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcg > 1:733472/1‑151 (MQ=255) aGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:157198/1‑150 (MQ=255) aaaaaaa‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc > 1:274944/1‑151 (MQ=255) aaaaac‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa < 1:133620/151‑1 (MQ=255) | GCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TT‑ACAGGTAAA‑TTCCAGGCAGAAAAAAA‑CCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCA > NC_000913/2001770‑2002063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |