| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,911,491 | Δ7,528 bp | [relA]–[gudD] | [relA], rlmD, barA, [gudD] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2911491 | 2919018 | 7528 | 56 [0] | [0] 56 | [relA]–[gudD] | [relA], rlmD, barA, [gudD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2911490 | 0 (0.000) | 54 (0.790) | 47/280 | 0.8 | 100% | coding (2162/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 | 2919019 = | 0 (0.000) | coding (367/1341 nt) | gudD | D‑glucarate dehydratase 1 | |||||
CATGAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTA > NC_000913/2918871‑2919168 | cctttcctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGAt < 2:517666‑M2/3‑1 (MQ=255) ttcctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATcc < 1:701358‑M2/5‑1 (MQ=255) cctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAg < 1:430362‑M2/7‑1 (MQ=255) ctcaaaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGc > 1:1036408‑M2/143‑150 (MQ=255) aaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGc < 2:843115‑M2/13‑1 (MQ=255) aaccgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGc > 2:707103‑M2/139‑151 (MQ=255) cgctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGc > 2:444003‑M2/136‑151 (MQ=255) gctatcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCt > 1:989579‑M2/135‑151 (MQ=255) atcatatgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTc < 1:166751‑M2/19‑1 (MQ=255) atgtagatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATccc > 2:778418‑M2/127‑151 (MQ=255) agatacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGt < 1:1129225‑M2/28‑1 (MQ=255) atacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAAc > 2:376343‑M2/121‑151 (MQ=255) atacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAAc > 1:667826‑M2/121‑151 (MQ=255) tacagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACt > 2:913702‑M2/120‑151 (MQ=255) acagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACt < 2:817933‑M2/32‑1 (MQ=255) cagtatatatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTa < 2:709965‑M2/33‑1 (MQ=255) tatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtctataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAAt > 2:335781‑M2/111‑150 (MQ=255) tatcaatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAAt > 1:1103156‑M2/111‑150 (MQ=255) aatctacattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTgg > 1:483810‑M2/107‑151 (MQ=255) acattgtagatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGt > 1:623484‑M2/102‑151 (MQ=255) agatacgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCa > 2:307269‑M2/95‑150 (MQ=255) acgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGt > 2:176012‑M2/91‑151 (MQ=255) acgagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGt > 1:68222‑M2/91‑151 (MQ=255) gagcaaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCt > 2:696838‑M2/89‑151 (MQ=255) aaatttcggcctaactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCa > 2:675347‑M2/85‑150 (MQ=255) tcggcctaactcccgtgcaaccgaggcgcgtcgataacatccggcacctcgttgagtttacccagcacacgccacagcaGATCTAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAAcc < 1:584691‑M2/70‑1 (MQ=255) cggcctaactcccgtgcaaccgacgctcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAATCcg < 1:488184‑M2/71‑1 (MQ=255) taactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccac > 2:541259‑M2/74‑151 (MQ=255) aactcccgtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCccacc > 2:433720‑M2/73‑151 (MQ=255) gtgcaaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCa < 2:327065‑M2/86‑1 (MQ=255) caaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCAc > 1:587014‑M2/63‑149 (MQ=255) caaccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGa < 2:194051‑M2/89‑1 (MQ=255) accgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATc < 2:519672‑M2/91‑1 (MQ=255) accgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATc < 1:951946‑M2/91‑1 (MQ=255) ccgccgggcgtcgataacatccggctcctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCg < 1:626833‑M2/92‑1 (MQ=255) ccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCg > 1:904156‑M2/60‑151 (MQ=255) ccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCg < 2:904212‑M2/92‑1 (MQ=255) ccgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCg < 2:113645‑M2/92‑1 (MQ=255) cgacgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCgg < 1:933995‑M2/93‑1 (MQ=255) acgcgcgtcgataacatccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCa < 2:603765‑M2/95‑1 (MQ=255) catccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCAc < 1:288942‑M2/109‑1 (MQ=255) catccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCAc < 1:448825‑M2/109‑1 (MQ=255) ccggcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAg < 2:1016003‑M2/112‑1 (MQ=255) gcacctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGt > 2:474401‑M2/37‑151 (MQ=255) ctggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTc > 1:773519‑M2/33‑148 (MQ=255) ggttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCAACACGATCGGCAAAAGTATTACGCACCAGCGTCAGaa < 1:877581‑M2/120‑1 (MQ=255) gttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACg > 2:905947‑M2/30‑151 (MQ=255) ttgagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGt > 2:330338‑M2/29‑151 (MQ=255) gagtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGtt < 1:474371‑M2/124‑1 (MQ=255) gtttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGttttt > 2:274070‑M2/25‑151 (MQ=255) ttacccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGt > 2:485540‑M2/23‑151 (MQ=255) acccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTa < 2:497107‑M2/130‑1 (MQ=255) acccagcacgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTAt > 2:198303‑M2/21‑151 (MQ=255) cgcgccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCAccc > 2:622795‑M2/13‑149 (MQ=255) gccccagcaGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGt > 2:440546‑M2/10‑151 (MQ=255) aGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTa < 2:1036490‑M2/150‑1 (MQ=255) | CATGAGTCATCCGGCTGGCTTTGATACGGCAGCGGCGTGGCTTTGCGATTACCGACGAAGAACAGATAACCGAGCATTTCGACTTCGCTACGCTGTTGACCATCGCCCAGCAGCGATGCCACGTTTACCCCCAGATGCTGCCCCAGCAGATCCAGCATTGCCGCTTCTATCCCGGTAACTACATGAATAGTGGTACGTAGGTCAAATGTCTGCAAACCGCGCCCACCAGCATCACGATCGGCAAAAGTATTACGCACCAGCGTCAGAACGTTTTTGTATTCACCCAGCGTTTTACCTA > NC_000913/2918871‑2919168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |