| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,351,196 | (G)7→8 | intergenic (‑157/+211) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,351,189 | 1 | . | G | 91.7% | 145.9 / 6.7 | 48 | intergenic (‑150/+218) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base G (26/18); total (27/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
GCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCA‑‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATGGCGATGGCTGGGACGGTT > NC_000913/1351041‑1351324 | gCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCA‑‑gg > 1:365079/1‑151 (MQ=255) tttAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCA‑‑ggg‑g > 2:309604/1‑151 (MQ=255) tATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTAGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAACAGGCTGCGGCA‑‑ggg‑gggggcgc > 1:309430/1‑145 (MQ=255) aTTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCttt < 1:784476/151‑1 (MQ=255) aTTGTTGAGGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCttt > 1:542191/1‑151 (MQ=255) gATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCt > 2:250706/1‑151 (MQ=255) tgtgCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCAccc > 1:464279/1‑147 (MQ=255) gCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAAccc < 1:580923/150‑1 (MQ=255) tGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCCCCCTAACCCtctc > 1:461829/1‑151 (MQ=255) tCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCCCACCCTAACCCCCTaccc > 2:507547/1‑148 (MQ=255) gCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAgggg < 1:741427/151‑1 (MQ=255) cGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCAAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTTAACCCCTTCCCCGAgggg > 2:731834/1‑150 (MQ=255) ttCGTCGTTTTAGTAAACAGTACGAACAGATCAACGGTTATTATATTCAACCTGGCTGTGAGTATTTATAGTTACTAGGTCCGCCCGGAGCAGGCTGCGGCC‑‑GGGAGGGGGGTTTTTCTCCTCCCCCTAAATCTCTCCCCaaag > 1:558695/1‑144 (MQ=255) cgtTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAgggg > 1:614031/1‑149 (MQ=255) gtTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCCCCCCCTCACCCCCCCCCCAGAGGGGGGAgggg > 2:696914/1‑148 (MQ=255) ttAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTTCCCTCACCCCAACCCTCTCCCCCGAGGGGTGAGGGGAcc > 2:729709/1‑148 (MQ=255) aGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCCGAGGGGCGAGGGGACCGTAtt > 1:26553/1‑151 (MQ=255) gTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTAtt > 1:339016/1‑150 (MQ=255) gTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCA‑‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATtgt < 2:328808/151‑1 (MQ=255) gTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAat < 1:588635/151‑1 (MQ=255) aCGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAata < 1:490444/150‑1 (MQ=255) aaCAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCA‑‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGtt < 2:134407/151‑1 (MQ=255) aGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGGCCGGATTGTGC‑AAATATTGtt > 1:47221/1‑149 (MQ=255) gATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTAcc < 2:461865/151‑1 (MQ=255) aaaCGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCa < 2:47243/151‑1 (MQ=255) aaaCGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCCAGGGGGCCGCTTTGTGC‑AAATATTTTTAcccc > 1:442258/1‑150 (MQ=38) aCGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTTTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAg > 2:248500/1‑150 (MQ=255) aCGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCAACCTTACCCTCCCCCCAAGGGGGGGAGGGGGACGTATTGTGCAAAAAATTTTTAccc > 1:855557/1‑148 (MQ=255) tattatAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCCCTCCCCAGAGGGGGGAGGGGGCCGGATTTTGC‑AAATATTTTTTcccccacaaaa > 2:454861/1‑143 (MQ=255) attatAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGcaacaa < 2:154722/150‑1 (MQ=255) attatAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGAAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCCAACCCCCCCCCCAGAAGGGCGGGGGGGCCGTCTCGGGC‑AAATCTTTTTACCCCAGcaa > 1:781288/1‑147 (MQ=255) ataATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCaacaaaca < 2:594644/150‑1 (MQ=255) aaTCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAgg < 2:84058/150‑1 (MQ=255) aTCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTTCCCCTAACCCTCTCCCCCGAGGGGGGGGGGGCACGTATTTTGC‑AAATATTTTTAACCCCGCaacaaaaa > 1:433361/1‑145 (MQ=255) aTCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCCAACCCTCCCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAgg > 1:396290/1‑149 (MQ=255) aaCCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAt < 2:723457/151‑1 (MQ=255) tGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCCCCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑CAATATTGTTACCCCAGCAAAAAACAGGCTCAT‑ACa > 2:105654/1‑150 (MQ=255) atgtgAGTAGCTTTAGTTGCGAGGTCCGACCGGAGCAGGCTGCATCAG‑GGG‑GGGGCGCTTTTCCCCTCCTCCTAACCCTTTCCCCACTGGGGGGGGGGGACCCTATTGTGC‑AAATATTTTTACCCCAGCAACAAAAAGGCTTAT‑ACAGcc > 1:36056/2‑150 (MQ=255) gtgAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCt < 1:154666/151‑1 (MQ=255) gAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCCGAGGGGCGGGGGGACCGTATTGTGC‑CAATATTTTTACCCCCGCAACAAACAGGCTCAT‑ACAGcccc > 2:686571/1‑148 (MQ=38) gAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAAACCTCTCCCCCGAGGGGCGGGGGGGCCGGATTGTGC‑AAATATTGTTAACCCAGCAACAAACAGGCTCAT‑ACAGccccca > 2:837666/1‑148 (MQ=255) aGTAGCTATAGTAGCCAGGTCTGACCGGAGCAGGCTGTGGCA‑‑GGG‑GGGGCTCTTTTCTCCTCACCCTAACCCTCTCCCCAGACGGGCGAGGGGACCGTATTGTGT‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCGCCTaa < 1:344357/149‑1 (MQ=38) tAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGGGGGGACCGTATTGTGC‑CAATATTGTTACCCCCGCAAAAAACAGGCTCAT‑ACAACCCCTAAccc > 2:90300/1‑151 (MQ=38) gCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTTAACCTCTCCCCCGAGGGGCGGGGGGACCGGATTGTGC‑AAATATTTTTACCCCCGCAACAAACAAGGTCATAACGGCCCCAAAcctt > 2:148244/1‑149 (MQ=255) ataGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAGGGGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCtt < 2:485146/149‑1 (MQ=255) aGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATg < 2:570053/151‑1 (MQ=255) ccAGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCCGAGGGGCGAGGGGGCCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATGGCGa > 1:388322/1‑150 (MQ=255) aGGTCCGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATGGCGATgg < 1:300063/151‑1 (MQ=255) cGACCGGAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATGGCGATGGCTggg < 1:681319/151‑1 (MQ=255) ggAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATGGCGATGGCTGGGACGGt < 1:674120/151‑1 (MQ=255) gAGCAGGCTGCGGCAG‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATGGCGATGGCTGGGACGGtt < 2:725459/151‑1 (MQ=255) | GCTTTAATCCTTATTGTTGATGCTTGTTGTGCCTGAAAATCAGGCGATTCGTCGTTTTAGTAAACAGTACGAACAGATAAACGGTTATTATAATCAACCTGGCTGTGAGTAGCTATAGTTGCCAGGTCCGACCGGAGCAGGCTGCGGCA‑‑GGG‑GGGGCGCTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGTATTGTGC‑AAATATTGTTACCCCAGCAACAAACAGGCTCAT‑ACAGCCCCTAACCCTTTCATGGCGATGGCTGGGACGGTT > NC_000913/1351041‑1351324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |